Rmu_co8499881.1_g000001

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8499881.1
OG0014124
Physical Location & Seq
Reverse (-)
1 .. 2391
2391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8499881.1_g000001.1.cds

Sequence Viewer

Length: 718 bp
atgccgaagcgaaagcagcgaaccggagccgttcagcctctgaagacgcagaagcgtatgcgaagagccaagccgatttgctcttgcacctctcctcgtttcacttcttctggccccgccttcacctgtcacgagcaggacgtttggacggagatcgcaaagtttctggacggaaagtcactggtgatgctcgctgcgacatgtcgttggttccacgcgctggtcgaggacgggagcatatggaggtacttgtgcttgcgtgatcttcaggtccctgctcctcgccccccggcggcgtttgattggaagaagctctacatttccgctttcaatgggagtcactcttacatgttccgccatccggagaagcatatcgtactcctaacagagaggctgagcaccccactgaaattccccaaggaagatagcattcagaaaatgttggagtcgagcggcagttgtgtgttgaacaatgtgaaacctgggatatggattgcagatctccagcttgttcgatgccctgtctgcgagctcaatacttgtgatggaacaatgcaaacattggatgcaaggcatattgaactgttcttgagtgagggataccaggatggtagctgggaatatgaacttattggaattcaggatgtcaaaaagcatgttgagggtgcttctggagctattttcgatgtcaaacacctcaaagactcttcaacttcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

27.11

Weight (kDa)

8.82

Isoelectric Point (pI)

55.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61730 AT5G36000
fragaria_vesca FvH4_7g16360 FvH4_7g16360
malus_domestica MD01G1080100.v1.1 MD07G1149100.v1.1
prunus_persica Prupe.2G187500_v2.0.a1
pyrus_communis pycom01g10840
rosa_chinensis RchiOBHm_Chr1g0359371
rosa_laevigata RLG00000027875
rosa_multiflora Rmu_co8499881.1_g000001
rosa_rugosa Rorug01G0270600
rosa_samantha Rh1AG284100 Rh1BG250200 Rh1CG268100 Rh1DG279100
rosa_wichuraiana Rw1G025220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 220
AccBSI CCGCTC 1 cut(s) 453
AccII CGCG 1 cut(s) 218
AccIII TCCGGA 1 cut(s) 361
AciI CCGC 5 cut(s) 117, 293, 324, 355, 453
AcsI RAATTY 2 cut(s) 410, 636
AcuI CTGAAG 3 cut(s) 62, 251, 699
AfaI GTAC 2 cut(s) 248, 378
AfiI CCNNNNNNNGG 3 cut(s) 220, 292, 361
AflIII ACRYGT 2 cut(s) 200, 348
AgsI TTSAA 4 cut(s) 331, 469, 581, 711
AhdI GACNNNNNGTC 1 cut(s) 175
AjnI CCWGG 2 cut(s) 481, 603
AluBI AGCT 5 cut(s) 313, 508, 532, 615, 677
AluI AGCT 5 cut(s) 313, 508, 532, 615, 677
Alw21I GWGCWC 2 cut(s) 401, 534
AlwNI CAGNNNCTG 1 cut(s) 40
Aor13HI TCCGGA 1 cut(s) 361
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 2 cut(s) 16, 194
ApoI RAATTY 2 cut(s) 410, 636
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 2 cut(s) 113, 271
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 2 cut(s) 115, 196
AvaII GGWCC 1 cut(s) 271
BanII GRGCYC 1 cut(s) 534
BarI GAAGNNNNNNTAC 2 cut(s) 299, 331
BauI CACGAG 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 50
Bbv12I GWGCWC 2 cut(s) 401, 534
BbvI GCAGC 2 cut(s) 28, 181
BccI CCATC 3 cut(s) 366, 539, 602
BceAI ACGGC 1 cut(s) 14
BciT130I CCWGG 2 cut(s) 483, 605
BciVI GTATCC 1 cut(s) 593
BcnI CCSGG 1 cut(s) 290
BfuI GTATCC 1 cut(s) 593
BglII AGATCT 1 cut(s) 499
BisI GCNGC 4 cut(s) 17, 195, 294, 454
BlpI GCTNAGC 1 cut(s) 395
BlsI GCNGC 4 cut(s) 18, 196, 295, 455
Bme1390I CCNGG 3 cut(s) 290, 483, 605
Bme18I GGWCC 1 cut(s) 271
BmeRI GACNNNNNGTC 1 cut(s) 175
BmgT120I GGNCC 2 cut(s) 113, 271
BmiI GGNNCC 4 cut(s) 28, 115, 212, 273
BmrFI CCNGG 3 cut(s) 290, 483, 605
BmsI GCATC 3 cut(s) 177, 506, 556
BpiI GAAGAC 1 cut(s) 50
BpmI CTGGAG 2 cut(s) 488, 693
Bpu1102I GCTNAGC 1 cut(s) 395
BpuEI CTTGAG 1 cut(s) 610
BpuMI CCSGG 1 cut(s) 290
BsaJI CCNNGG 3 cut(s) 288, 417, 482
BsaWI WCCGGW 2 cut(s) 23, 361
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 292, 361
Bse1I ACTGG 1 cut(s) 186
BseAI TCCGGA 1 cut(s) 361
BseBI CCWGG 2 cut(s) 483, 605
BseDI CCNNGG 3 cut(s) 288, 417, 482
BseGI GGATG 4 cut(s) 358, 571, 613, 649
BseLI CCNNNNNNNGG 3 cut(s) 220, 292, 361
BseMII CTCAG 1 cut(s) 386
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 2 cut(s) 84, 270
BseXI GCAGC 2 cut(s) 28, 181
BseYI CCCAGC 1 cut(s) 615
Bsh1236I CGCG 1 cut(s) 218
BshFI GGCC 1 cut(s) 114
BsiHKAI GWGCWC 2 cut(s) 401, 534
BsiSI CCGG 3 cut(s) 24, 290, 362
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 3 cut(s) 220, 292, 361
BsmFI GGGAC 1 cut(s) 257
BsmI GAATGC 1 cut(s) 429
BsnI GGCC 1 cut(s) 114
Bsp1286I GDGCHC 2 cut(s) 401, 534
Bsp13I TCCGGA 1 cut(s) 361
Bsp143I GATC 3 cut(s) 153, 262, 499
Bsp1720I GCTNAGC 1 cut(s) 395
BspACI CCGC 5 cut(s) 117, 293, 324, 355, 453
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 387
BspEI TCCGGA 1 cut(s) 361
BspFNI CGCG 1 cut(s) 218
BspLI GGNNCC 4 cut(s) 28, 115, 212, 273
BspQI GCTCTTC 1 cut(s) 58
BsrBI CCGCTC 1 cut(s) 453
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 3 cut(s) 288, 417, 482
BssMI GATC 3 cut(s) 153, 262, 499
BssSI CACGAG 1 cut(s) 131
BssT1I CCWWGG 1 cut(s) 417
Bst2BI CACGAG 1 cut(s) 131
Bst2UI CCWGG 2 cut(s) 483, 605
Bst4CI ACNGT 1 cut(s) 585
Bst6I CTCTTC 2 cut(s) 58, 712
BstC8I GCNNGC 3 cut(s) 192, 257, 530
BstDEI CTNAG 1 cut(s) 395
BstF5I GGATG 4 cut(s) 358, 571, 613, 649
BstFNI CGCG 1 cut(s) 218
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 3 cut(s) 156, 265, 502
BstMBI GATC 3 cut(s) 153, 262, 499
BstMWI GCNNNNNNNGC 3 cut(s) 16, 525, 674
BstNI CCWGG 2 cut(s) 483, 605
BstNSI RCATGY 3 cut(s) 204, 352, 659
BstSCI CCNGG 3 cut(s) 288, 481, 603
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 2 cut(s) 28, 181
BstV2I GAAGAC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 499
BstYI RGATCY 1 cut(s) 499
BsuI GTATCC 1 cut(s) 593
BsuRI GGCC 1 cut(s) 114
BtsCI GGATG 4 cut(s) 358, 571, 613, 649
BtsIMutI CAGTG 2 cut(s) 179, 404
Cac8I GCNNGC 3 cut(s) 192, 257, 530
CaiI CAGNNNCTG 1 cut(s) 40
CfoI GCGC 1 cut(s) 220
Cfr13I GGNCC 2 cut(s) 113, 271
CseI GACGC 1 cut(s) 55
Csp6I GTAC 2 cut(s) 247, 377
CviAII CATG 3 cut(s) 201, 349, 656
CviQI GTAC 2 cut(s) 247, 377
DdeI CTNAG 1 cut(s) 395
DpnI GATC 3 cut(s) 155, 264, 501
DpnII GATC 3 cut(s) 153, 262, 499
DriI GACNNNNNGTC 1 cut(s) 175
Eam1104I CTCTTC 2 cut(s) 58, 712
Eam1105I GACNNNNNGTC 1 cut(s) 175
EarI CTCTTC 2 cut(s) 58, 712
EciI GGCGGA 1 cut(s) 344
Ecl136II GAGCTC 1 cut(s) 532
Eco130I CCWWGG 1 cut(s) 417
Eco24I GRGCYC 1 cut(s) 534
Eco47I GGWCC 1 cut(s) 271
Eco53kI GAGCTC 1 cut(s) 532
Eco57I CTGAAG 3 cut(s) 62, 251, 699
EcoICRI GAGCTC 1 cut(s) 532
EcoO109I RGGNCCY 1 cut(s) 271
EcoRI GAATTC 1 cut(s) 636
EcoRII CCWGG 2 cut(s) 481, 603
EcoT14I CCWWGG 1 cut(s) 417
EcoT38I GRGCYC 1 cut(s) 534
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 3 cut(s) 204, 352, 659
FaqI GGGAC 1 cut(s) 257
FatI CATG 3 cut(s) 200, 348, 655
FauI CCCGC 1 cut(s) 124
FauNDI CATATG 1 cut(s) 239
Fnu4HI GCNGC 4 cut(s) 17, 195, 294, 454
FokI GGATG 4 cut(s) 345, 578, 620, 656
FriOI GRGCYC 1 cut(s) 534
Fsp4HI GCNGC 4 cut(s) 17, 195, 294, 454
GlaI GCGC 1 cut(s) 219
GluI GCNGC 4 cut(s) 17, 195, 294, 454
GsaI CCCAGC 1 cut(s) 619
GsuI CTGGAG 2 cut(s) 488, 693
HaeIII GGCC 1 cut(s) 114
HapII CCGG 3 cut(s) 24, 290, 362
HgaI GACGC 1 cut(s) 55
HhaI GCGC 1 cut(s) 220
Hin1II CATG 3 cut(s) 204, 352, 659
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HinfI GANTC 3 cut(s) 337, 446, 704
HpaII CCGG 3 cut(s) 24, 290, 362
HphI GGTGA 2 cut(s) 115, 196
Hpy188I TCNGA 2 cut(s) 42, 435
Hpy188III TCNNGA 6 cut(s) 131, 167, 362, 589, 641, 672
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 1 cut(s) 585
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 4 cut(s) 87, 497, 556, 569
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 525, 674
HpyF3I CTNAG 1 cut(s) 395
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 3 cut(s) 204, 352, 659
HspAI GCGC 1 cut(s) 218
Kpn2I TCCGGA 1 cut(s) 361
Kzo9I GATC 3 cut(s) 153, 262, 499
LguI GCTCTTC 1 cut(s) 58
LmnI GCTCC 4 cut(s) 26, 234, 283, 674
Lsp1109I GCAGC 2 cut(s) 28, 181
LweI GCATC 3 cut(s) 177, 506, 556
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 3 cut(s) 128, 177, 338
MalI GATC 3 cut(s) 155, 264, 501
MbiI CCGCTC 1 cut(s) 453
MboI GATC 3 cut(s) 153, 262, 499
MboII GAAGA 7 cut(s) 55, 75, 99, 257, 319, 434, 699
MflI RGATCY 1 cut(s) 499
MhlI GDGCHC 2 cut(s) 401, 534
MluCI AATT 2 cut(s) 410, 636
MlyI GAGTC 3 cut(s) 346, 455, 698
MmeI TCCRAC 1 cut(s) 423
MroI TCCGGA 1 cut(s) 361
MspI CCGG 3 cut(s) 24, 290, 362
MspR9I CCNGG 3 cut(s) 290, 483, 605
Mva1269I GAATGC 1 cut(s) 429
MvaI CCWGG 2 cut(s) 483, 605
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 3 cut(s) 16, 525, 674
NciI CCSGG 1 cut(s) 290
NdeI CATATG 1 cut(s) 239
NdeII GATC 3 cut(s) 153, 262, 499
NlaIII CATG 3 cut(s) 204, 352, 659
NlaIV GGNNCC 4 cut(s) 28, 115, 212, 273
NmuCI GTSAC 3 cut(s) 128, 177, 338
NspI RCATGY 3 cut(s) 204, 352, 659
PciI ACATGT 2 cut(s) 200, 348
PciSI GCTCTTC 1 cut(s) 58
PcsI WCGNNNNNNNCGW 2 cut(s) 138, 222
PctI GAATGC 1 cut(s) 429
PflMI CCANNNNNTGG 1 cut(s) 220
PkrI GCNGC 4 cut(s) 18, 196, 295, 455
PleI GAGTC 3 cut(s) 345, 454, 698
PpsI GAGTC 3 cut(s) 345, 454, 698
PpuMI RGGWCCY 1 cut(s) 271
PscI ACATGT 2 cut(s) 200, 348
Psp124BI GAGCTC 1 cut(s) 534
Psp5II RGGWCCY 1 cut(s) 271
Psp6I CCWGG 2 cut(s) 481, 603
PspFI CCCAGC 1 cut(s) 615
PspGI CCWGG 2 cut(s) 481, 603
PspN4I GGNNCC 4 cut(s) 28, 115, 212, 273
PspPI GGNCC 2 cut(s) 113, 271
PspPPI RGGWCCY 1 cut(s) 271
PstNI CAGNNNCTG 1 cut(s) 40
PsuI RGATCY 1 cut(s) 499
RsaI GTAC 2 cut(s) 248, 378
RsaNI GTAC 2 cut(s) 247, 377
SacI GAGCTC 1 cut(s) 534
SapI GCTCTTC 1 cut(s) 58
SatI GCNGC 4 cut(s) 17, 195, 294, 454
Sau3AI GATC 3 cut(s) 153, 262, 499
Sau96I GGNCC 2 cut(s) 113, 271
SchI GAGTC 3 cut(s) 346, 455, 698
ScrFI CCNGG 3 cut(s) 290, 483, 605
SduI GDGCHC 2 cut(s) 401, 534
SfaNI GCATC 3 cut(s) 177, 506, 556
SinI GGWCC 1 cut(s) 271
SmlI CTYRAG 1 cut(s) 589
SmoI CTYRAG 1 cut(s) 589
Sse9I AATT 2 cut(s) 410, 636
SsiI CCGC 5 cut(s) 117, 293, 324, 355, 453
SstI GAGCTC 1 cut(s) 534
StyD4I CCNGG 3 cut(s) 288, 481, 603
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 1 cut(s) 585
TaiI ACGT 1 cut(s) 144
TaqI TCGA 4 cut(s) 225, 449, 514, 684
TasI AATT 2 cut(s) 410, 636
TauI GCSGC 2 cut(s) 296, 456
TscAI CASTG 2 cut(s) 186, 411
TseFI GTSAC 3 cut(s) 128, 177, 338
TseI GCWGC 2 cut(s) 16, 194
Tsp45I GTSAC 3 cut(s) 128, 177, 338
TspDTI ATGAA 1 cut(s) 639
TspGWI ACGGA 2 cut(s) 164, 186
TspRI CASTG 2 cut(s) 186, 411
Van91I CCANNNNNTGG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 2 cut(s) 410, 636
XceI RCATGY 3 cut(s) 204, 352, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.