FvH4_7g16360

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014124
Physical Location & Seq
Reverse (-)
14014859 .. 14017875
3017 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g16360.t1

Sequence Viewer

Length: 954 bp
ATGGCGAAGCGAAAGCAGCGAACCGGAGCCGTTCAGCCTCAGCCTCTCAAGACGCAGAAGCGTATGCGCAGAGCCAAGCCGATTTGCTCCTGCAGCTCTCCTCGCTTCACCTCTTCTGGCCCAGCCTTCACCTGTTACGAGCAGGACGTTTGGACGGAGATCGCAAAGTTTCTGGACGGAAAATCACTGGTGATGATTGCTGCGACATGTCGTTGGTTCCACGAGCTGGTCATGGAGGGCTGCATCTGGAGGTACTTGTGCTTGCGTGATCTTCAGGTCCCTGCTCCTCGCCACCCGGCGGCTTTTGATTGGAAGAAGCTCTACATTTCCTCTTTCAATGGGAGTCACTCTTACATGTTCCGCCAGCCAGAGAAGCATATTGACTGGATGCGTATTGGTGCCTTTTTCCTGGAGTCTTCTTCAGTACTCATAACAGAAAGGCTGAGCACCCCACTGAAATTGCCCAAGGAAGAAAGTGTTCAACAAATGCTGGAGTCCTGCGGCAGTTGTGTGTTGAATGATGCCAAACCTGGGATATGGATTGCAGATCTCCAGCTTGTCCGGTGCCCCGTCTGCGAGCTCAATACTTGTGATGGAACAATGCAGACATTGGATGCAAGGCATATCGAACTGTTCTTGAGTGAGGGATACCAGGATGGTAGCTGGGAATATGAACTTATTGGAATTCAGGATGTCAAAAAGCATGTTGAGGGTGCTTCTGGAGCTATTTTTGATGTCAAACACCTCAATGACACTTCAACTTCAGTCTTCAACCTCAACTCATGGGTGGGCAAAGCGAATGACTGGCAACCAAAGGCTGTGATCACAATGCATGCAGTTGCTGTCAACACAAATCTACAGAAAAATGAAGGCCTGCAAGTCAAATACCATGTCATGAGAGCTGGAGCTGGAGGAGAAGTCGTATCTATCAGAATCTCGCAGCAGCTTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

35.86

Weight (kDa)

8.58

Isoelectric Point (pI)

47.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 49 - 89 4.2e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61730 AT5G36000
fragaria_vesca FvH4_7g16360 FvH4_7g16360
malus_domestica MD01G1080100.v1.1 MD07G1149100.v1.1
prunus_persica Prupe.2G187500_v2.0.a1
pyrus_communis pycom01g10840
rosa_chinensis RchiOBHm_Chr1g0359371
rosa_laevigata RLG00000027875
rosa_multiflora Rmu_co8499881.1_g000001
rosa_rugosa Rorug01G0270600
rosa_samantha Rh1AG284100 Rh1BG250200 Rh1CG268100 Rh1DG279100
rosa_wichuraiana Rw1G025220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 68
AccB1I GGYRCC 2 cut(s) 398, 564
AccB7I CCANNNNNTGG 1 cut(s) 226
AciI CCGC 3 cut(s) 299, 361, 501
AcsI RAATTY 1 cut(s) 684
AcuI CTGAAG 3 cut(s) 257, 405, 747
AfaI GTAC 2 cut(s) 254, 426
AfiI CCNNNNNNNGG 3 cut(s) 226, 298, 531
AflIII ACRYGT 2 cut(s) 206, 354
AgsI TTSAA 5 cut(s) 337, 482, 517, 759, 772
AjnI CCWGG 3 cut(s) 408, 529, 651
Alw21I GWGCWC 2 cut(s) 449, 582
AlwNI CAGNNNCTG 2 cut(s) 842, 949
AoxI GGCC 2 cut(s) 118, 871
ApeKI GCWGC 6 cut(s) 16, 93, 200, 240, 940, 943
ApoI RAATTY 1 cut(s) 684
ArsI GACNNNNNNTTYG 2 cut(s) 876, 908
Asp700I GAANNNNTTC 1 cut(s) 477
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 2 cut(s) 119, 277
AsuC2I CCSGG 1 cut(s) 296
AsuHPI GGTGA 3 cut(s) 100, 121, 202
AvaII GGWCC 1 cut(s) 277
BaeGI GKGCMC 1 cut(s) 569
BanI GGYRCC 2 cut(s) 398, 564
BanII GRGCYC 1 cut(s) 582
BarI GAAGNNNNNNTAC 2 cut(s) 305, 337
BauI CACGAG 1 cut(s) 221
BbsI GAAGAC 2 cut(s) 408, 760
Bbv12I GWGCWC 2 cut(s) 449, 582
BbvCI CCTCAGC 1 cut(s) 39
BbvI GCAGC 4 cut(s) 28, 105, 187, 227
BccI CCATC 2 cut(s) 587, 650
BceAI ACGGC 1 cut(s) 14
BciT130I CCWGG 3 cut(s) 410, 531, 653
BciVI GTATCC 1 cut(s) 641
BclI TGATCA 1 cut(s) 822
BcnI CCSGG 1 cut(s) 296
BfmI CTRYAG 3 cut(s) 91, 857, 950
BfuI GTATCC 1 cut(s) 641
BglII AGATCT 1 cut(s) 547
BisI GCNGC 8 cut(s) 17, 94, 201, 241, 300, 502, 941, 944
BlpI GCTNAGC 1 cut(s) 443
BlsI GCNGC 8 cut(s) 18, 95, 202, 242, 301, 503, 942, 945
BmcAI AGTACT 1 cut(s) 426
Bme1390I CCNGG 4 cut(s) 296, 410, 531, 653
Bme18I GGWCC 1 cut(s) 277
BmgT120I GGNCC 2 cut(s) 119, 277
BmiI GGNNCC 5 cut(s) 28, 218, 279, 400, 566
BmrFI CCNGG 4 cut(s) 296, 410, 531, 653
BmsI GCATC 4 cut(s) 252, 378, 511, 604
BpiI GAAGAC 2 cut(s) 408, 760
BpmI CTGGAG 7 cut(s) 268, 431, 512, 536, 741, 924, 930
Bpu10I CCTNAGC 1 cut(s) 39
Bpu1102I GCTNAGC 1 cut(s) 443
BpuEI CTTGAG 2 cut(s) 32, 658
BpuMI CCSGG 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 465, 530
BsaWI WCCGGW 2 cut(s) 23, 561
BsaXI ACNNNNNCTCC 4 cut(s) 903, 906, 933, 936
Bsc4I CCNNNNNNNGG 3 cut(s) 226, 298, 531
Bse1I ACTGG 3 cut(s) 192, 389, 809
BseBI CCWGG 3 cut(s) 410, 531, 653
BseDI CCNNGG 2 cut(s) 465, 530
BseGI GGATG 4 cut(s) 393, 619, 661, 697
BseLI CCNNNNNNNGG 3 cut(s) 226, 298, 531
BseMII CTCAG 2 cut(s) 53, 434
BseNI ACTGG 3 cut(s) 192, 389, 809
BseRI GAGGAG 3 cut(s) 90, 276, 927
BseSI GKGCMC 1 cut(s) 569
BseXI GCAGC 4 cut(s) 28, 105, 187, 227
BseYI CCCAGC 2 cut(s) 121, 663
BshFI GGCC 2 cut(s) 120, 873
BshNI GGYRCC 2 cut(s) 398, 564
BsiHKAI GWGCWC 2 cut(s) 449, 582
BsiSI CCGG 3 cut(s) 24, 296, 562
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 3 cut(s) 226, 298, 531
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 2 cut(s) 120, 873
Bsp1286I GDGCHC 3 cut(s) 449, 569, 582
Bsp143I GATC 4 cut(s) 159, 268, 547, 822
Bsp1720I GCTNAGC 1 cut(s) 443
BspACI CCGC 3 cut(s) 299, 361, 501
BspANI GGCC 2 cut(s) 120, 873
BspCNI CTCAG 2 cut(s) 52, 435
BspHI TCATGA 1 cut(s) 894
BspLI GGNNCC 5 cut(s) 28, 218, 279, 400, 566
BspMAI CTGCAG 1 cut(s) 95
BspT107I GGYRCC 2 cut(s) 398, 564
BsrI ACTGG 3 cut(s) 192, 389, 809
BssECI CCNNGG 2 cut(s) 465, 530
BssMI GATC 4 cut(s) 159, 268, 547, 822
BssSI CACGAG 1 cut(s) 221
BssT1I CCWWGG 1 cut(s) 465
Bst2BI CACGAG 1 cut(s) 221
Bst2UI CCWGG 3 cut(s) 410, 531, 653
Bst4CI ACNGT 1 cut(s) 633
Bst6I CTCTTC 1 cut(s) 118
BstC8I GCNNGC 5 cut(s) 263, 365, 578, 834, 875
BstDEI CTNAG 2 cut(s) 39, 443
BstF5I GGATG 4 cut(s) 393, 619, 661, 697
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 4 cut(s) 162, 271, 550, 825
BstMBI GATC 4 cut(s) 159, 268, 547, 822
BstMWI GCNNNNNNNGC 6 cut(s) 16, 93, 102, 373, 573, 722
BstNI CCWGG 3 cut(s) 410, 531, 653
BstNSI RCATGY 4 cut(s) 210, 358, 707, 836
BstSCI CCNGG 4 cut(s) 294, 408, 529, 651
BstSFI CTRYAG 3 cut(s) 91, 857, 950
BstSLI GKGCMC 1 cut(s) 569
BstV1I GCAGC 4 cut(s) 28, 105, 187, 227
BstV2I GAAGAC 2 cut(s) 408, 760
BstX2I RGATCY 1 cut(s) 547
BstYI RGATCY 1 cut(s) 547
BsuI GTATCC 1 cut(s) 641
BsuRI GGCC 2 cut(s) 120, 873
BtsCI GGATG 4 cut(s) 393, 619, 661, 697
BtsIMutI CAGTG 2 cut(s) 185, 452
Cac8I GCNNGC 5 cut(s) 263, 365, 578, 834, 875
CaiI CAGNNNCTG 2 cut(s) 842, 949
CciI TCATGA 1 cut(s) 894
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 2 cut(s) 119, 277
CseI GACGC 1 cut(s) 61
Csp6I GTAC 2 cut(s) 253, 425
CspCI CAANNNNNGTGG 2 cut(s) 441, 476
CviAII CATG 8 cut(s) 207, 232, 355, 704, 783, 833, 890, 895
CviQI GTAC 2 cut(s) 253, 425
DdeI CTNAG 2 cut(s) 39, 443
DpnI GATC 4 cut(s) 161, 270, 549, 824
DpnII GATC 4 cut(s) 159, 268, 547, 822
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
EciI GGCGGA 1 cut(s) 350
Ecl136II GAGCTC 1 cut(s) 580
Eco130I CCWWGG 1 cut(s) 465
Eco147I AGGCCT 1 cut(s) 873
Eco24I GRGCYC 1 cut(s) 582
Eco47I GGWCC 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 580
Eco57I CTGAAG 3 cut(s) 257, 405, 747
EcoICRI GAGCTC 1 cut(s) 580
EcoO109I RGGNCCY 1 cut(s) 277
EcoRI GAATTC 1 cut(s) 684
EcoRII CCWGG 3 cut(s) 408, 529, 651
EcoT14I CCWWGG 1 cut(s) 465
EcoT22I ATGCAT 1 cut(s) 834
EcoT38I GRGCYC 1 cut(s) 582
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 8 cut(s) 210, 235, 358, 707, 786, 836, 893, 898
FaqI GGGAC 1 cut(s) 263
FatI CATG 8 cut(s) 206, 231, 354, 703, 782, 832, 889, 894
FbaI TGATCA 1 cut(s) 822
Fnu4HI GCNGC 8 cut(s) 17, 94, 201, 241, 300, 502, 941, 944
FokI GGATG 4 cut(s) 400, 626, 668, 704
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 8 cut(s) 17, 94, 201, 241, 300, 502, 941, 944
FspI TGCGCA 1 cut(s) 68
GlaI GCGC 1 cut(s) 68
GluI GCNGC 8 cut(s) 17, 94, 201, 241, 300, 502, 941, 944
GsaI CCCAGC 2 cut(s) 125, 667
GsuI CTGGAG 7 cut(s) 268, 431, 512, 536, 741, 924, 930
HaeIII GGCC 2 cut(s) 120, 873
HapII CCGG 3 cut(s) 24, 296, 562
HgaI GACGC 1 cut(s) 61
HhaI GCGC 1 cut(s) 69
Hin1II CATG 8 cut(s) 210, 235, 358, 707, 786, 836, 893, 898
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HincII GTYRAC 1 cut(s) 847
HindII GTYRAC 1 cut(s) 847
HinfI GANTC 4 cut(s) 343, 413, 494, 933
HpaII CCGG 3 cut(s) 24, 296, 562
HphI GGTGA 3 cut(s) 100, 121, 202
Hpy166II GTNNAC 1 cut(s) 847
Hpy188I TCNGA 1 cut(s) 932
Hpy188III TCNNGA 7 cut(s) 49, 173, 247, 637, 689, 720, 895
Hpy8I GTNNAC 1 cut(s) 847
HpyAV CCTTC 2 cut(s) 136, 863
HpyCH4III ACNGT 1 cut(s) 633
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 8 cut(s) 93, 243, 545, 604, 617, 832, 836, 877
HpyF10VI GCNNNNNNNGC 6 cut(s) 16, 93, 102, 373, 573, 722
HpyF3I CTNAG 2 cut(s) 39, 443
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 8 cut(s) 210, 235, 358, 707, 786, 836, 893, 898
HspAI GCGC 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 822
Kzo9I GATC 4 cut(s) 159, 268, 547, 822
LmnI GCTCC 5 cut(s) 26, 92, 289, 722, 905
Lsp1109I GCAGC 4 cut(s) 28, 105, 187, 227
LweI GCATC 4 cut(s) 252, 378, 511, 604
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 2 cut(s) 134, 344
MalI GATC 4 cut(s) 161, 270, 549, 824
MboI GATC 4 cut(s) 159, 268, 547, 822
MboII GAAGA 7 cut(s) 105, 263, 325, 408, 411, 482, 760
MflI RGATCY 1 cut(s) 547
MhlI GDGCHC 3 cut(s) 449, 569, 582
MluCI AATT 2 cut(s) 458, 684
MlyI GAGTC 3 cut(s) 352, 422, 503
Mph1103I ATGCAT 1 cut(s) 834
MroXI GAANNNNTTC 1 cut(s) 477
MslI CAYNNNNRTG 1 cut(s) 747
MspI CCGG 3 cut(s) 24, 296, 562
MspR9I CCNGG 4 cut(s) 296, 410, 531, 653
MvaI CCWGG 3 cut(s) 410, 531, 653
MwoI GCNNNNNNNGC 6 cut(s) 16, 93, 102, 373, 573, 722
NciI CCSGG 1 cut(s) 296
NdeII GATC 4 cut(s) 159, 268, 547, 822
NlaIII CATG 8 cut(s) 210, 235, 358, 707, 786, 836, 893, 898
NlaIV GGNNCC 5 cut(s) 28, 218, 279, 400, 566
NmuCI GTSAC 1 cut(s) 344
NsbI TGCGCA 1 cut(s) 68
NsiI ATGCAT 1 cut(s) 834
NspI RCATGY 4 cut(s) 210, 358, 707, 836
PaeI GCATGC 1 cut(s) 836
PagI TCATGA 1 cut(s) 894
PceI AGGCCT 1 cut(s) 873
PciI ACATGT 2 cut(s) 206, 354
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 1 cut(s) 933
PflMI CCANNNNNTGG 1 cut(s) 226
PfoI TCCNGGA 1 cut(s) 408
PkrI GCNGC 8 cut(s) 18, 95, 202, 242, 301, 503, 942, 945
PleI GAGTC 3 cut(s) 351, 421, 502
PpsI GAGTC 3 cut(s) 351, 421, 502
PpuMI RGGWCCY 1 cut(s) 277
PscI ACATGT 2 cut(s) 206, 354
Psp124BI GAGCTC 1 cut(s) 582
Psp5II RGGWCCY 1 cut(s) 277
Psp6I CCWGG 3 cut(s) 408, 529, 651
PspFI CCCAGC 2 cut(s) 121, 663
PspGI CCWGG 3 cut(s) 408, 529, 651
PspN4I GGNNCC 5 cut(s) 28, 218, 279, 400, 566
PspPI GGNCC 2 cut(s) 119, 277
PspPPI RGGWCCY 1 cut(s) 277
PstI CTGCAG 1 cut(s) 95
PstNI CAGNNNCTG 2 cut(s) 842, 949
PsuI RGATCY 1 cut(s) 547
RsaI GTAC 2 cut(s) 254, 426
RsaNI GTAC 2 cut(s) 253, 425
RseI CAYNNNNRTG 1 cut(s) 747
SacI GAGCTC 1 cut(s) 582
SatI GCNGC 8 cut(s) 17, 94, 201, 241, 300, 502, 941, 944
Sau3AI GATC 4 cut(s) 159, 268, 547, 822
Sau96I GGNCC 2 cut(s) 119, 277
ScaI AGTACT 1 cut(s) 426
SchI GAGTC 3 cut(s) 352, 422, 503
ScrFI CCNGG 4 cut(s) 296, 410, 531, 653
SduI GDGCHC 3 cut(s) 449, 569, 582
SfaNI GCATC 4 cut(s) 252, 378, 511, 604
SfcI CTRYAG 3 cut(s) 91, 857, 950
SinI GGWCC 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 747
SmlI CTYRAG 2 cut(s) 47, 637
SmoI CTYRAG 2 cut(s) 47, 637
SphI GCATGC 1 cut(s) 836
Sse9I AATT 2 cut(s) 458, 684
SseBI AGGCCT 1 cut(s) 873
SsiI CCGC 3 cut(s) 299, 361, 501
SstI GAGCTC 1 cut(s) 582
StuI AGGCCT 1 cut(s) 873
StyD4I CCNGG 4 cut(s) 294, 408, 529, 651
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 1 cut(s) 633
TaiI ACGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 627
TasI AATT 2 cut(s) 458, 684
TatI WGTACW 1 cut(s) 424
TauI GCSGC 2 cut(s) 302, 504
TfiI GAWTC 1 cut(s) 933
TscAI CASTG 2 cut(s) 192, 459
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 6 cut(s) 16, 93, 200, 240, 940, 943
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 2 cut(s) 687, 882
TspGWI ACGGA 2 cut(s) 170, 192
TspRI CASTG 2 cut(s) 192, 459
Van91I CCANNNNNTGG 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 277
XapI RAATTY 1 cut(s) 684
XceI RCATGY 4 cut(s) 210, 358, 707, 836
XmnI GAANNNNTTC 1 cut(s) 477
ZrmI AGTACT 1 cut(s) 426
Zsp2I ATGCAT 1 cut(s) 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.