AT5G36000

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014124
Physical Location & Seq
Forward (+)
14139940 .. 14141892
1953 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G36000.1

Sequence Viewer

Length: 1068 bp
ATGAATACGAGATCTGGTGATGCCGAAGGAGATATTAGAGGGAAGATGATAGCTCCGGTGAGAGACGGAAATGGTGGACAGAAGAGAAAATTGGTACAGAGCAACGATATTCAGAGAGACGAAGATGGTGGAGCAAAGAGAAGAATCATTCAGAGCAGCGACCAGAAGAACGGGAAGATCCTGAGAGGAATCCATGGCTGTGTATCTCCTCGGTGCTCTGCTCCGACTTACCAGTCTCGCTTCTCCTGGTATGAGCAAGATATATGGACATACATAACAAGGTTTTTGGATGGTAAATCATTGGTGAAGCTGGGAGCAACGAACAAATGGTTCTATAAGATTGCAATGGAGGATACTGTTTGGAGGTTTGCATGCTTGCGTGATCTTCAGGTCCCTGAGACGTTTCCAGTTTCTTCCACCTGGATTAAGATTTATGCTTCAGCTTTTGATGGGAGTCACTCTTACTTGTTCCACCAGAAGGAGAAGCATATTGATTGGATGCGTCTTGGTGCCTTTGTTCTTGACTCTCGAACTTCATTCCTGACTGAGAGTTTGAGTGGTCGTCTGAAAGTCCCAACAGAAGGAACTATAGAACAAATGTTACAATCCAGTGGTTCATGTCTTATCAACGACATCAAAAGCGGTATTTGGATTGCAGATTTACAGCTTTTGCGTTGCCCTCTTTGTGACCTCAGTACCTGTGATGGAACAATGCAAACTCTTGATGTTAGGCACATTGAACTCTTCCTTAGTGAAGGCTACAAAGATGGAAGCTGGGATTATAATCTGATTGGATCTCATAAGTTGGAGAAAGACGCAAGTGCAGCCTGTGGAGCCATATTTGACCTCAAACACCTTAAAAAATCTTCATCCTCAGGTATTCTCAACCTCAAGTCTTGGACCGGAGAGGCAGATGATTCCCAACCTAAAGCAGTTATTGCACCCCATGCAGTTGCTGTTCACACAAGATTGCAACAAAACGAAGGAATCCTTGTGAAGTACCACACAATGAAAGCAGGAACAGACGGTGACATTGTTTCCATCAGAATCTCCCAGCAGCTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

39.74

Weight (kDa)

8.52

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61730 AT5G36000
fragaria_vesca FvH4_7g16360 FvH4_7g16360
malus_domestica MD01G1080100.v1.1 MD07G1149100.v1.1
prunus_persica Prupe.2G187500_v2.0.a1
pyrus_communis pycom01g10840
rosa_chinensis RchiOBHm_Chr1g0359371
rosa_laevigata RLG00000027875
rosa_multiflora Rmu_co8499881.1_g000001
rosa_rugosa Rorug01G0270600
rosa_samantha Rh1AG284100 Rh1BG250200 Rh1CG268100 Rh1DG279100
rosa_wichuraiana Rw1G025220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 783
AasI GACNNNNNNGTC 1 cut(s) 232
AccB1I GGYRCC 1 cut(s) 509
AciI CCGC 1 cut(s) 642
AclWI GGATC 2 cut(s) 172, 802
AcuI CTGAAG 2 cut(s) 371, 423
AfaI GTAC 3 cut(s) 96, 697, 1001
AfiI CCNNNNNNNGG 2 cut(s) 478, 581
AgsI TTSAA 1 cut(s) 740
AjnI CCWGG 2 cut(s) 245, 419
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AluBI AGCT 6 cut(s) 53, 310, 443, 667, 774, 1060
AluI AGCT 6 cut(s) 53, 310, 443, 667, 774, 1060
Alw21I GWGCWC 1 cut(s) 218
Alw26I GTCTC 4 cut(s) 57, 111, 240, 392
AlwI GGATC 2 cut(s) 172, 802
AlwNI CAGNNNCTG 2 cut(s) 699, 956
ApeKI GCWGC 3 cut(s) 156, 824, 1057
ArsI GACNNNNNNTTYG 2 cut(s) 535, 567
AspS9I GGNCC 2 cut(s) 391, 900
AsuHPI GGTGA 4 cut(s) 29, 70, 316, 1040
AvaII GGWCC 2 cut(s) 391, 900
AxyI CCTNAGG 1 cut(s) 874
BaeI ACNNNNGTAYC 2 cut(s) 679, 712
BanI GGYRCC 1 cut(s) 509
Bbv12I GWGCWC 1 cut(s) 218
BbvI GCAGC 2 cut(s) 168, 836
BccI CCATC 6 cut(s) 119, 284, 443, 698, 761, 1049
BciT130I CCWGG 2 cut(s) 247, 421
BciVI GTATCC 1 cut(s) 346
BcoDI GTCTC 4 cut(s) 57, 111, 240, 392
BfmI CTRYAG 1 cut(s) 588
BfuI GTATCC 1 cut(s) 346
BglII AGATCT 1 cut(s) 11
BisI GCNGC 3 cut(s) 157, 825, 1058
BlsI GCNGC 3 cut(s) 158, 826, 1059
Bme1390I CCNGG 2 cut(s) 247, 421
Bme18I GGWCC 2 cut(s) 391, 900
BmgT120I GGNCC 2 cut(s) 391, 900
BmiI GGNNCC 3 cut(s) 393, 511, 835
BmrFI CCNGG 2 cut(s) 247, 421
BmsI GCATC 2 cut(s) 10, 489
BpuEI CTTGAG 1 cut(s) 875
BsaBI GATNNNNATC 1 cut(s) 783
BsaJI CCNNGG 2 cut(s) 193, 209
BsaWI WCCGGW 2 cut(s) 55, 902
Bsc4I CCNNNNNNNGG 2 cut(s) 478, 581
Bse1I ACTGG 3 cut(s) 232, 407, 609
Bse21I CCTNAGG 1 cut(s) 874
Bse3DI GCAATG 1 cut(s) 351
Bse8I GATNNNNATC 1 cut(s) 783
BseBI CCWGG 2 cut(s) 247, 421
BseDI CCNNGG 2 cut(s) 193, 209
BseGI GGATG 3 cut(s) 295, 504, 869
BseJI GATNNNNATC 1 cut(s) 783
BseLI CCNNNNNNNGG 2 cut(s) 478, 581
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 5 cut(s) 173, 387, 537, 706, 888
BseNI ACTGG 3 cut(s) 232, 407, 609
BseRI GAGGAG 1 cut(s) 198
BseXI GCAGC 2 cut(s) 168, 836
BseYI CCCAGC 3 cut(s) 310, 774, 1053
BsgI GTGCAG 1 cut(s) 843
BshNI GGYRCC 1 cut(s) 509
BsiHKAI GWGCWC 1 cut(s) 218
BsiSI CCGG 2 cut(s) 56, 903
BslFI GGGAC 2 cut(s) 377, 557
BslI CCNNNNNNNGG 2 cut(s) 478, 581
BsmAI GTCTC 4 cut(s) 57, 111, 240, 392
BsmBI CGTCTC 3 cut(s) 57, 111, 392
BsmFI GGGAC 2 cut(s) 377, 557
Bsp1286I GDGCHC 1 cut(s) 218
Bsp143I GATC 4 cut(s) 11, 177, 382, 794
Bsp19I CCATGG 1 cut(s) 193
BspACI CCGC 1 cut(s) 642
BspCNI CTCAG 5 cut(s) 174, 388, 538, 705, 887
BspLI GGNNCC 3 cut(s) 393, 511, 835
BspPI GGATC 2 cut(s) 172, 802
BspT107I GGYRCC 1 cut(s) 509
BsrDI GCAATG 1 cut(s) 351
BsrI ACTGG 3 cut(s) 232, 407, 609
BssECI CCNNGG 2 cut(s) 193, 209
BssMI GATC 4 cut(s) 11, 177, 382, 794
BssT1I CCWWGG 1 cut(s) 193
Bst2UI CCWGG 2 cut(s) 247, 421
Bst4CI ACNGT 2 cut(s) 358, 1028
Bst6I CTCTTC 2 cut(s) 77, 749
BstAPI GCANNNNNTGC 2 cut(s) 938, 947
BstC8I GCNNGC 2 cut(s) 373, 377
BstDEI CTNAG 6 cut(s) 182, 396, 546, 692, 749, 874
BstDSI CCRYGG 1 cut(s) 193
BstF5I GGATG 3 cut(s) 295, 504, 869
BstKTI GATC 4 cut(s) 14, 180, 385, 797
BstMAI GTCTC 4 cut(s) 57, 111, 240, 392
BstMBI GATC 4 cut(s) 11, 177, 382, 794
BstMWI GCNNNNNNNGC 4 cut(s) 824, 833, 938, 947
BstNI CCWGG 2 cut(s) 247, 421
BstNSI RCATGY 1 cut(s) 375
BstSCI CCNGG 2 cut(s) 245, 419
BstSFI CTRYAG 1 cut(s) 588
BstV1I GCAGC 2 cut(s) 168, 836
BstX2I RGATCY 3 cut(s) 11, 177, 794
BstYI RGATCY 3 cut(s) 11, 177, 794
Bsu36I CCTNAGG 1 cut(s) 874
BsuI GTATCC 1 cut(s) 346
BtgI CCRYGG 1 cut(s) 193
BtsCI GGATG 3 cut(s) 295, 504, 869
BtsIMutI CAGTG 1 cut(s) 616
Cac8I GCNNGC 2 cut(s) 373, 377
CaiI CAGNNNCTG 2 cut(s) 699, 956
Cfr13I GGNCC 2 cut(s) 391, 900
CseI GACGC 2 cut(s) 491, 824
Csp6I GTAC 3 cut(s) 95, 696, 1000
CviAII CATG 4 cut(s) 194, 372, 618, 947
CviQI GTAC 3 cut(s) 95, 696, 1000
DdeI CTNAG 6 cut(s) 182, 396, 546, 692, 749, 874
DpnI GATC 4 cut(s) 13, 179, 384, 796
DpnII GATC 4 cut(s) 11, 177, 382, 794
DrdI GACNNNNNNGTC 1 cut(s) 232
DseDI GACNNNNNNGTC 1 cut(s) 232
Eam1104I CTCTTC 2 cut(s) 77, 749
EarI CTCTTC 2 cut(s) 77, 749
Eco130I CCWWGG 1 cut(s) 193
Eco47I GGWCC 2 cut(s) 391, 900
Eco57I CTGAAG 2 cut(s) 371, 423
Eco81I CCTNAGG 1 cut(s) 874
EcoO109I RGGNCCY 1 cut(s) 391
EcoRII CCWGG 2 cut(s) 245, 419
EcoT14I CCWWGG 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 193
Esp3I CGTCTC 3 cut(s) 57, 111, 392
FaeI CATG 4 cut(s) 197, 375, 621, 950
FalI AAGNNNNNCTT 2 cut(s) 975, 1007
FaqI GGGAC 2 cut(s) 377, 557
FatI CATG 4 cut(s) 193, 371, 617, 946
Fnu4HI GCNGC 3 cut(s) 157, 825, 1058
FokI GGATG 3 cut(s) 302, 511, 856
Fsp4HI GCNGC 3 cut(s) 157, 825, 1058
GluI GCNGC 3 cut(s) 157, 825, 1058
GsaI CCCAGC 3 cut(s) 314, 778, 1057
HapII CCGG 2 cut(s) 56, 903
HgaI GACGC 2 cut(s) 491, 824
Hin1II CATG 4 cut(s) 197, 375, 621, 950
HinfI GANTC 7 cut(s) 144, 189, 454, 524, 917, 987, 1047
HpaII CCGG 2 cut(s) 56, 903
HphI GGTGA 4 cut(s) 29, 70, 316, 1040
Hpy166II GTNNAC 2 cut(s) 77, 961
Hpy188I TCNGA 7 cut(s) 114, 153, 225, 567, 789, 1046, 1067
Hpy188III TCNNGA 5 cut(s) 181, 521, 528, 541, 722
Hpy8I GTNNAC 2 cut(s) 77, 961
HpyAV CCTTC 5 cut(s) 20, 472, 575, 749, 977
HpyCH4III ACNGT 2 cut(s) 358, 1028
HpyCH4IV ACGT 1 cut(s) 401
HpyCH4V TGCA 8 cut(s) 344, 371, 656, 715, 824, 941, 950, 973
HpyF10VI GCNNNNNNNGC 4 cut(s) 824, 833, 938, 947
HpyF3I CTNAG 6 cut(s) 182, 396, 546, 692, 749, 874
HpySE526I ACGT 1 cut(s) 401
Hsp92II CATG 4 cut(s) 197, 375, 621, 950
Kzo9I GATC 4 cut(s) 11, 177, 382, 794
LmnI GCTCC 5 cut(s) 58, 131, 226, 314, 833
Lsp1109I GCAGC 2 cut(s) 168, 836
LweI GCATC 2 cut(s) 10, 489
MaeII ACGT 1 cut(s) 401
MaeIII GTNAC 4 cut(s) 455, 600, 686, 1028
MalI GATC 4 cut(s) 13, 179, 384, 796
MboI GATC 4 cut(s) 11, 177, 382, 794
MflI RGATCY 3 cut(s) 11, 177, 794
MhlI GDGCHC 1 cut(s) 218
MluCI AATT 1 cut(s) 89
MlyI GAGTC 2 cut(s) 463, 518
MmeI TCCRAC 2 cut(s) 248, 786
MseI TTAA 2 cut(s) 426, 858
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 2 cut(s) 56, 903
MspR9I CCNGG 2 cut(s) 247, 421
MvaI CCWGG 2 cut(s) 247, 421
MwoI GCNNNNNNNGC 4 cut(s) 824, 833, 938, 947
NcoI CCATGG 1 cut(s) 193
NdeII GATC 4 cut(s) 11, 177, 382, 794
NlaIII CATG 4 cut(s) 197, 375, 621, 950
NlaIV GGNNCC 3 cut(s) 393, 511, 835
NmuCI GTSAC 3 cut(s) 455, 686, 1028
NspI RCATGY 1 cut(s) 375
PaeI GCATGC 1 cut(s) 375
PfeI GAWTC 5 cut(s) 144, 189, 917, 987, 1047
PkrI GCNGC 3 cut(s) 158, 826, 1059
PleI GAGTC 2 cut(s) 462, 518
PpsI GAGTC 2 cut(s) 462, 518
PpuMI RGGWCCY 1 cut(s) 391
PsiI TTATAA 1 cut(s) 783
Psp5II RGGWCCY 1 cut(s) 391
Psp6I CCWGG 2 cut(s) 245, 419
PspFI CCCAGC 3 cut(s) 310, 774, 1053
PspGI CCWGG 2 cut(s) 245, 419
PspN4I GGNNCC 3 cut(s) 393, 511, 835
PspPI GGNCC 2 cut(s) 391, 900
PspPPI RGGWCCY 1 cut(s) 391
PsrI GAACNNNNNNTAC 2 cut(s) 585, 617
PstNI CAGNNNCTG 2 cut(s) 699, 956
PsuI RGATCY 3 cut(s) 11, 177, 794
RsaI GTAC 3 cut(s) 96, 697, 1001
RsaNI GTAC 3 cut(s) 95, 696, 1000
RseI CAYNNNNRTG 1 cut(s) 198
SaqAI TTAA 2 cut(s) 426, 858
SatI GCNGC 3 cut(s) 157, 825, 1058
Sau3AI GATC 4 cut(s) 11, 177, 382, 794
Sau96I GGNCC 2 cut(s) 391, 900
SchI GAGTC 2 cut(s) 463, 518
ScrFI CCNGG 2 cut(s) 247, 421
SduI GDGCHC 1 cut(s) 218
SfaNI GCATC 2 cut(s) 10, 489
SfcI CTRYAG 1 cut(s) 588
SinI GGWCC 2 cut(s) 391, 900
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 890
SmoI CTYRAG 1 cut(s) 890
SphI GCATGC 1 cut(s) 375
Sse9I AATT 1 cut(s) 89
SsiI CCGC 1 cut(s) 642
StyD4I CCNGG 2 cut(s) 245, 419
StyI CCWWGG 1 cut(s) 193
TaaI ACNGT 2 cut(s) 358, 1028
TaiI ACGT 1 cut(s) 404
TaqI TCGA 1 cut(s) 529
TasI AATT 1 cut(s) 89
TfiI GAWTC 5 cut(s) 144, 189, 917, 987, 1047
Tru1I TTAA 2 cut(s) 426, 858
Tru9I TTAA 2 cut(s) 426, 858
TscAI CASTG 1 cut(s) 616
TseFI GTSAC 3 cut(s) 455, 686, 1028
TseI GCWGC 3 cut(s) 156, 824, 1057
Tsp45I GTSAC 3 cut(s) 455, 686, 1028
TspDTI ATGAA 5 cut(s) 17, 525, 606, 858, 1025
TspGWI ACGGA 1 cut(s) 81
TspRI CASTG 1 cut(s) 616
VpaK11BI GGWCC 2 cut(s) 391, 900
XceI RCATGY 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.