Prupe.2G187500_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0014124
Physical Location & Seq
Reverse (-)
22803662 .. 22806702
3041 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G187500.1

Sequence Viewer

Length: 954 bp
ATGCCGAAGCGCAAGAGAGCCGTCGTCACCCAGCCCCAACCTCCTCAAATGCAAAAGCGTATGAGAAGAACCAAGACGATTTGCTCTTGCAGCTCTCCTCGCTTCACTGACAACTCCGCTGGCTCCGCCTTTTGCTGGTACGAAGAGGACGTTTGGACAGAGATCGCCAAGTATCTAGACGGAAAGTCACTGGTGATGCTCGCAACGACATGTTGTTGGTTCCACGGTCTGATTATGGAAGGGAGCATATGGAAGTACGCCTGCCTGCGTGATCTTCAGGTCCCTGCTCCTCTCCACGTGGCATTCAATTGGAGGAACCTCTACGTTTCAGCCTTCGATGGAAGCCATTCTTACATGTTCCGCCAGAAGGAGAAGCATATTGACTGGATGCGGATTGGTGCATTTTCCGTTGAATCTTCAGAAGCACTCTTGACAGAAAGGCTGAGAAACCCAACAAAACTCCCAGAAGAAGATACCATGCAGAAAATGTTGGAGGCCTGCGGCTATTGTGTGCTGGATAACGTTAAAGCTGGGATATGGATAGCTGATCTCCAACTTGTTCGATGCCCCGTCTGCGAGCTCAATACATGTGATGGAACAATGCAGACGCTGGATGCAAGGCATATAGAATTGTTCTTGAGCGAGGGGTATCAGAATGGAAGCTGGGAATACGAACATATCGGTTCCCATGATGTCAAAAAGCATGTCGATGGTGCTTCGGGGGCTATTTTCGATCTCAAACACCTCAATGACTCTCCAACATCTGTCTTTAATCTCAAGTCATGGGTTGGTAAACCGAACGACTGGCAACCAAAGGCTATCATTACTCTACATTCAGTTGCAGTCAACACCAACTTACAGAAAAATGAAGGACTTCAAGTCAAATACCAAGTGATGAGAGCTGGAGCTGGAGGTGAAGTTGTATCTATTAGAATCTCTCAGCAGCTCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

36.04

Weight (kDa)

7.97

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61730 AT5G36000
fragaria_vesca FvH4_7g16360 FvH4_7g16360
malus_domestica MD01G1080100.v1.1 MD07G1149100.v1.1
prunus_persica Prupe.2G187500_v2.0.a1
pyrus_communis pycom01g10840
rosa_chinensis RchiOBHm_Chr1g0359371
rosa_laevigata RLG00000027875
rosa_multiflora Rmu_co8499881.1_g000001
rosa_rugosa Rorug01G0270600
rosa_samantha Rh1AG284100 Rh1BG250200 Rh1CG268100 Rh1DG279100
rosa_wichuraiana Rw1G025220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 117, 126, 361, 391, 501
AclI AACGTT 1 cut(s) 522
AcuI CTGAAG 2 cut(s) 260, 402
AcvI CACGTG 1 cut(s) 298
AfaI GTAC 2 cut(s) 140, 257
AfiI CCNNNNNNNGG 2 cut(s) 135, 367
AflIII ACRYGT 3 cut(s) 209, 354, 587
AgsI TTSAA 3 cut(s) 307, 413, 878
AhdI GACNNNNNGTC 2 cut(s) 184, 878
AluBI AGCT 8 cut(s) 93, 530, 545, 580, 663, 902, 908, 946
AluI AGCT 8 cut(s) 93, 530, 545, 580, 663, 902, 908, 946
Alw21I GWGCWC 1 cut(s) 582
AlwNI CAGNNNCTG 2 cut(s) 610, 949
AoxI GGCC 1 cut(s) 495
ApeKI GCWGC 2 cut(s) 90, 943
ArsI GACNNNNNNTTYG 2 cut(s) 690, 722
Asp700I GAANNNNTTC 2 cut(s) 346, 873
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 280
AsuHPI GGTGA 3 cut(s) 19, 205, 926
AvaII GGWCC 1 cut(s) 280
BanII GRGCYC 1 cut(s) 582
BbrPI CACGTG 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 1 cut(s) 102
BccI CCATC 3 cut(s) 332, 587, 704
BceAI ACGGC 1 cut(s) 5
BfaI CTAG 1 cut(s) 176
BisI GCNGC 3 cut(s) 91, 502, 944
BlsI GCNGC 3 cut(s) 92, 503, 945
Bme18I GGWCC 1 cut(s) 280
BmeRI GACNNNNNGTC 2 cut(s) 184, 878
BmgT120I GGNCC 1 cut(s) 280
BmiI GGNNCC 5 cut(s) 124, 221, 282, 317, 685
BmsI GCATC 4 cut(s) 186, 378, 554, 604
BpmI CTGGAG 2 cut(s) 924, 930
BpuEI CTTGAG 2 cut(s) 658, 761
BsaAI YACGTR 1 cut(s) 298
BsaJI CCNNGG 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 903, 933
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 367
Bse1I ACTGG 3 cut(s) 195, 389, 809
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 2 cut(s) 393, 619
BseLI CCNNNNNNNGG 2 cut(s) 135, 367
BseMII CTCAG 2 cut(s) 434, 953
BseNI ACTGG 3 cut(s) 195, 389, 809
BseRI GAGGAG 3 cut(s) 33, 87, 279
BseXI GCAGC 1 cut(s) 102
BseYI CCCAGC 3 cut(s) 30, 530, 663
BshFI GGCC 1 cut(s) 497
BsiHKAI GWGCWC 1 cut(s) 582
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 2 cut(s) 135, 367
BsmFI GGGAC 1 cut(s) 266
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 1 cut(s) 497
Bsp1286I GDGCHC 1 cut(s) 582
Bsp143I GATC 4 cut(s) 162, 271, 547, 733
BspACI CCGC 5 cut(s) 117, 126, 361, 391, 501
BspANI GGCC 1 cut(s) 497
BspCNI CTCAG 2 cut(s) 435, 952
BspLI GGNNCC 5 cut(s) 124, 221, 282, 317, 685
BsrI ACTGG 3 cut(s) 195, 389, 809
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 4 cut(s) 162, 271, 547, 733
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 138
BstBAI YACGTR 1 cut(s) 298
BstC8I GCNNGC 6 cut(s) 121, 201, 262, 266, 499, 578
BstDEI CTNAG 2 cut(s) 443, 939
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 2 cut(s) 393, 619
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 4 cut(s) 165, 274, 550, 736
BstMBI GATC 4 cut(s) 162, 271, 547, 733
BstMWI GCNNNNNNNGC 5 cut(s) 90, 99, 125, 573, 722
BstNSI RCATGY 4 cut(s) 213, 358, 591, 707
BstV1I GCAGC 1 cut(s) 102
BsuRI GGCC 1 cut(s) 497
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 2 cut(s) 393, 619
BtsIMutI CAGTG 2 cut(s) 105, 188
Cac8I GCNNGC 6 cut(s) 121, 201, 262, 266, 499, 578
CaiI CAGNNNCTG 2 cut(s) 610, 949
CfoI GCGC 1 cut(s) 12
Cfr13I GGNCC 1 cut(s) 280
CseI GACGC 1 cut(s) 616
Csp6I GTAC 2 cut(s) 139, 256
CviAII CATG 7 cut(s) 210, 355, 478, 588, 689, 704, 783
CviQI GTAC 2 cut(s) 139, 256
DdeI CTNAG 2 cut(s) 443, 939
DpnI GATC 4 cut(s) 164, 273, 549, 735
DpnII GATC 4 cut(s) 162, 271, 547, 733
DriI GACNNNNNGTC 2 cut(s) 184, 878
Eam1104I CTCTTC 1 cut(s) 138
Eam1105I GACNNNNNGTC 2 cut(s) 184, 878
EarI CTCTTC 1 cut(s) 138
EciI GGCGGA 2 cut(s) 115, 350
Ecl136II GAGCTC 1 cut(s) 580
Eco147I AGGCCT 1 cut(s) 497
Eco24I GRGCYC 1 cut(s) 582
Eco47I GGWCC 1 cut(s) 280
Eco53kI GAGCTC 1 cut(s) 580
Eco57I CTGAAG 2 cut(s) 260, 402
Eco72I CACGTG 1 cut(s) 298
EcoICRI GAGCTC 1 cut(s) 580
EcoO109I RGGNCCY 1 cut(s) 280
EcoT38I GRGCYC 1 cut(s) 582
FaeI CATG 7 cut(s) 213, 358, 481, 591, 692, 707, 786
FalI AAGNNNNNCTT 2 cut(s) 334, 366
FaqI GGGAC 1 cut(s) 266
FatI CATG 7 cut(s) 209, 354, 477, 587, 688, 703, 782
FauNDI CATATG 1 cut(s) 248
Fnu4HI GCNGC 3 cut(s) 91, 502, 944
FokI GGATG 2 cut(s) 400, 626
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 3 cut(s) 91, 502, 944
FspBI CTAG 1 cut(s) 176
GlaI GCGC 1 cut(s) 11
GluI GCNGC 3 cut(s) 91, 502, 944
GsaI CCCAGC 3 cut(s) 34, 534, 667
GsuI CTGGAG 2 cut(s) 924, 930
HaeIII GGCC 1 cut(s) 497
HgaI GACGC 1 cut(s) 616
HhaI GCGC 1 cut(s) 12
Hin1II CATG 7 cut(s) 213, 358, 481, 591, 692, 707, 786
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HincII GTYRAC 1 cut(s) 847
HindII GTYRAC 1 cut(s) 847
HinfI GANTC 3 cut(s) 413, 752, 933
HphI GGTGA 3 cut(s) 19, 205, 926
Hpy166II GTNNAC 2 cut(s) 794, 847
Hpy188I TCNGA 3 cut(s) 231, 421, 654
Hpy188III TCNNGA 3 cut(s) 176, 430, 637
Hpy8I GTNNAC 2 cut(s) 794, 847
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 4 cut(s) 233, 343, 361, 863
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4IV ACGT 4 cut(s) 150, 297, 324, 522
HpyCH4V TGCA 7 cut(s) 52, 90, 401, 481, 604, 617, 842
HpyF10VI GCNNNNNNNGC 5 cut(s) 90, 99, 125, 573, 722
HpyF3I CTNAG 2 cut(s) 443, 939
HpySE526I ACGT 4 cut(s) 150, 297, 324, 522
Hsp92II CATG 7 cut(s) 213, 358, 481, 591, 692, 707, 786
HspAI GCGC 1 cut(s) 10
Kzo9I GATC 4 cut(s) 162, 271, 547, 733
LmnI GCTCC 5 cut(s) 128, 243, 292, 905, 951
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 4 cut(s) 186, 378, 554, 604
MaeI CTAG 1 cut(s) 176
MaeII ACGT 4 cut(s) 150, 297, 324, 522
MaeIII GTNAC 2 cut(s) 25, 186
MalI GATC 4 cut(s) 164, 273, 549, 735
MboI GATC 4 cut(s) 162, 271, 547, 733
MboII GAAGA 6 cut(s) 78, 155, 266, 408, 479, 482
MfeI CAATTG 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 582
MluCI AATT 2 cut(s) 307, 629
MlyI GAGTC 1 cut(s) 746
MmeI TCCRAC 3 cut(s) 471, 577, 782
MroXI GAANNNNTTC 2 cut(s) 346, 873
MseI TTAA 2 cut(s) 525, 771
MslI CAYNNNNRTG 2 cut(s) 708, 747
MspA1I CMGCKG 1 cut(s) 119
MunI CAATTG 1 cut(s) 307
Mva1269I GAATGC 1 cut(s) 302
MwoI GCNNNNNNNGC 5 cut(s) 90, 99, 125, 573, 722
NdeI CATATG 1 cut(s) 248
NdeII GATC 4 cut(s) 162, 271, 547, 733
NlaIII CATG 7 cut(s) 213, 358, 481, 591, 692, 707, 786
NlaIV GGNNCC 5 cut(s) 124, 221, 282, 317, 685
NmuCI GTSAC 2 cut(s) 25, 186
NspI RCATGY 4 cut(s) 213, 358, 591, 707
PceI AGGCCT 1 cut(s) 497
PciI ACATGT 3 cut(s) 209, 354, 587
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PctI GAATGC 1 cut(s) 302
PdmI GAANNNNTTC 2 cut(s) 346, 873
PfeI GAWTC 2 cut(s) 413, 933
PkrI GCNGC 3 cut(s) 92, 503, 945
PleI GAGTC 1 cut(s) 746
PmaCI CACGTG 1 cut(s) 298
PmlI CACGTG 1 cut(s) 298
PpsI GAGTC 1 cut(s) 746
Ppu21I YACGTR 1 cut(s) 298
PpuMI RGGWCCY 1 cut(s) 280
PscI ACATGT 3 cut(s) 209, 354, 587
Psp124BI GAGCTC 1 cut(s) 582
Psp1406I AACGTT 1 cut(s) 522
Psp5II RGGWCCY 1 cut(s) 280
PspCI CACGTG 1 cut(s) 298
PspFI CCCAGC 3 cut(s) 30, 530, 663
PspN4I GGNNCC 5 cut(s) 124, 221, 282, 317, 685
PspPI GGNCC 1 cut(s) 280
PspPPI RGGWCCY 1 cut(s) 280
PstNI CAGNNNCTG 2 cut(s) 610, 949
RsaI GTAC 2 cut(s) 140, 257
RsaNI GTAC 2 cut(s) 139, 256
RseI CAYNNNNRTG 2 cut(s) 708, 747
SacI GAGCTC 1 cut(s) 582
SaqAI TTAA 2 cut(s) 525, 771
SatI GCNGC 3 cut(s) 91, 502, 944
Sau3AI GATC 4 cut(s) 162, 271, 547, 733
Sau96I GGNCC 1 cut(s) 280
SchI GAGTC 1 cut(s) 746
SduI GDGCHC 1 cut(s) 582
SfaNI GCATC 4 cut(s) 186, 378, 554, 604
SinI GGWCC 1 cut(s) 280
SmiMI CAYNNNNRTG 2 cut(s) 708, 747
SmlI CTYRAG 2 cut(s) 637, 776
SmoI CTYRAG 2 cut(s) 637, 776
Sse9I AATT 2 cut(s) 307, 629
SseBI AGGCCT 1 cut(s) 497
SsiI CCGC 5 cut(s) 117, 126, 361, 391, 501
SspMI CTAG 1 cut(s) 176
SstI GAGCTC 1 cut(s) 582
StuI AGGCCT 1 cut(s) 497
TaaI ACNGT 1 cut(s) 227
TaiI ACGT 4 cut(s) 153, 300, 327, 525
TaqI TCGA 4 cut(s) 336, 562, 708, 732
TasI AATT 2 cut(s) 307, 629
TauI GCSGC 1 cut(s) 504
TfiI GAWTC 2 cut(s) 413, 933
Tru1I TTAA 2 cut(s) 525, 771
Tru9I TTAA 2 cut(s) 525, 771
TscAI CASTG 2 cut(s) 112, 195
TseFI GTSAC 2 cut(s) 25, 186
TseI GCWGC 2 cut(s) 90, 943
Tsp45I GTSAC 2 cut(s) 25, 186
TspDTI ATGAA 1 cut(s) 882
TspGWI ACGGA 2 cut(s) 195, 397
TspRI CASTG 2 cut(s) 112, 195
VpaK11BI GGWCC 1 cut(s) 280
XbaI TCTAGA 1 cut(s) 175
XceI RCATGY 4 cut(s) 213, 358, 591, 707
XmnI GAANNNNTTC 2 cut(s) 346, 873
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.