Rorug01G0270600

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014124
Physical Location & Seq
Reverse (-)
38323323 .. 38325123
1801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0270600.1

Sequence Viewer

Length: 1659 bp
ATGTCTTATAACAATTTGGAAGGTTCAATTCCGTCATTCAGTGGGGCCAAGGATATTGTTGCCATAGACCTTTCCTTCAATGGTCTAATCAGTACTATTAATTCCACCCACTGGAGAAACCTTACTAAGCTATCTTATCTCAGGTTGGGATCCAATAAGCTCGATGGGAATATCCCATCATCTCTGTTTTCTCTTCCCCTGTTGGGTACTCTAGAACTTTCCAGCAATCAATTCTCTGGTCCATTCGCTGAAATTTCAAATGTATCTTCCTACTTGCTTTCTGGTCTTGATTTGAGTAGTAACAATCTAGAAGGGCCAATACCTATGTCTATCTTTAGCTTGCAAGGTCTTATCAATCTAGATCTTTCTTCAAATAATTTAAGTGGTTCGTTTCCTCCTGACTGTCTACACCAACTGAGATATCTTTCTGTACTTGATCTTTCATATAATAACTTGTTTCTTACCCATGATTATACCAATTTCTCATATTCCTCAACTTCTCAACTATCTGATTTGAGGTTGGTGTCATTGCAGTTGAGAACAATTCCTAAATTCTTGAGAAATCAATCTAACTTGGGAAGTTTGGACCTTTCAGATAACCAGATAAATGGCAAGATACCCAACTGGATTTGGAGTCTTAGTGATCTTAGGTACCTAAATCTTTCTTGCAACTCCCTAGATTCTCTAGAAGTTCCTTCAATCAATCTCAGTAATTTAATGTACCTTGACCTCCATTCCAACCAGTTTCATGGGAAAATCCCAATTTTTCCATCACTTTACAGTGTCTATTATCTAGATTTCTCGAGAAATTATTTCAGCTCTCCCATACCGAGTACCACTGGAGATATGCTTGTAAAGACTAGATTATTGTCGCTTTCGAGCAATAACCTCAATGGGATCATTCCAGAATCATTATGCAATTCAACAAGTCTGAAAGTTCTTGATCTGTCCAATAATTCTTTGAGTGGCACGATTCCTCGGTGCTTGACTACAATGACCACGCTCGCAGTACTCAATTTAAGGAGGAACAATCTTACAAATGTTGATGAGTTCTCTCATACTTGTAGTTTAGAAATGCTAGATGTCAGTGGAAATCATATTCAAGGCCAGTTTTTAAAATCTCTTGTCAATTGCACCCGATTAGAGATCATAGACTTAGCTCACAACAATTTCAGTGGTGAAGTACCTGGAACAGCTTTGACGACTTGGCAGGCGATGAGGACTAGCAAAGATAATGCCCCATGGAAAATCCGTAACCTTCAAGTTGAGTATGGTGAAACTTATTATCAAGTAGATACAATCATGGTTAGCAAAAAAGGTTTAGAGATGGAGCTGGTGAATATTTTAACAATCTTCACCTCCGTTGACTTCTCATGCAACAAGTTCAACGGATCAATACCGGAGGAAATTGGAGAACTCAAATCATTAGATGCCCTCAACTTGTCCAACAATGCATTCACAGGTGCAGTTCCATCATCATTAAGTAACTTGAGTGAGCTAGAGTCTTTGGACCTTTCGAAAAACAAATTGAGCGGTCAAATCCCAGTGGAGCTTACAAAACTCACTTTCCTTGCATTCTTGAATCTCTCATATAATCAATTGGTCGGGAGGATACCAAGCGGTGCTCAATTTTCAACATTTGATGCAGCTTCCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

552

Amino Acids

60.99

Weight (kDa)

5.17

Isoelectric Point (pI)

28.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 22 - 78 5.1e-06 Leucine rich repeat
LRR_14 PF23598 28 - 259 3e-07 Leucine-rich repeat region
LRR_8 PF13855 93 - 152 2.6e-07 Leucine rich repeat
LRR_8 PF13855 168 - 226 6.1e-06 Leucine rich repeat
LRR_8 PF13855 288 - 345 5.6e-07 Leucine rich repeat
LRR_8 PF13855 310 - 367 4.8e-10 Leucine rich repeat
LRR_14 PF23598 465 - 529 7.8e-06 Leucine-rich repeat region
LRR_8 PF13855 475 - 534 4.6e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61730 AT5G36000
fragaria_vesca FvH4_7g16360 FvH4_7g16360
malus_domestica MD01G1080100.v1.1 MD07G1149100.v1.1
prunus_persica Prupe.2G187500_v2.0.a1
pyrus_communis pycom01g10840
rosa_chinensis RchiOBHm_Chr1g0359371
rosa_laevigata RLG00000027875
rosa_multiflora Rmu_co8499881.1_g000001
rosa_rugosa Rorug01G0270600
rosa_samantha Rh1AG284100 Rh1BG250200 Rh1CG268100 Rh1DG279100
rosa_wichuraiana Rw1G025220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 9
Acc65I GGTACC 1 cut(s) 651
AccB1I GGYRCC 1 cut(s) 651
AccB7I CCANNNNNTGG 1 cut(s) 111
AccBSI CCGCTC 1 cut(s) 1533
AccI GTMKAC 1 cut(s) 406
AciI CCGC 2 cut(s) 1533, 1620
AclWI GGATC 4 cut(s) 144, 157, 905, 1399
AcsI RAATTY 2 cut(s) 252, 551
AfaI GTAC 8 cut(s) 94, 208, 432, 653, 722, 835, 1011, 1185
AfiI CCNNNNNNNGG 2 cut(s) 111, 203
AjnI CCWGG 1 cut(s) 1186
AjuI GAANNNNNNNTTGG 2 cut(s) 1439, 1471
Alw21I GWGCWC 1 cut(s) 1627
AlwI GGATC 4 cut(s) 144, 157, 905, 1399
Ama87I CYCGRG 1 cut(s) 802
AoxI GGCC 3 cut(s) 45, 314, 1105
ApeKI GCWGC 1 cut(s) 1646
ApoI RAATTY 2 cut(s) 252, 551
AseI ATTAAT 1 cut(s) 99
Asp718I GGTACC 1 cut(s) 651
AspS9I GGNCC 5 cut(s) 45, 239, 314, 586, 1510
AsuHPI GGTGA 4 cut(s) 1190, 1286, 1348, 1348
AsuII TTCGAA 1 cut(s) 1517
AvaI CYCGRG 1 cut(s) 802
AvaII GGWCC 3 cut(s) 239, 586, 1510
BamHI GGATCC 1 cut(s) 149
BanI GGYRCC 1 cut(s) 651
BarI GAAGNNNNNNTAC 2 cut(s) 303, 335
Bbv12I GWGCWC 1 cut(s) 1627
BccI CCATC 5 cut(s) 158, 184, 778, 1321, 1480
BciT130I CCWGG 1 cut(s) 1188
BciVI GTATCC 1 cut(s) 1605
BfuI GTATCC 1 cut(s) 1605
BglII AGATCT 1 cut(s) 361
BisI GCNGC 1 cut(s) 1647
BlsI GCNGC 1 cut(s) 1648
BmcAI AGTACT 2 cut(s) 94, 1011
Bme1390I CCNGG 1 cut(s) 1188
Bme18I GGWCC 3 cut(s) 239, 586, 1510
BmeT110I CYCGRG 1 cut(s) 802
BmgT120I GGNCC 5 cut(s) 45, 239, 314, 586, 1510
BmiI GGNNCC 3 cut(s) 46, 151, 653
BmrFI CCNGG 1 cut(s) 1188
BmrI ACTGGG 1 cut(s) 1538
BmsI GCATC 2 cut(s) 1420, 1633
BmuI ACTGGG 1 cut(s) 1538
BpmI CTGGAG 2 cut(s) 133, 861
Bpu14I TTCGAA 1 cut(s) 1517
BpuEI CTTGAG 2 cut(s) 577, 1510
BsaJI CCNNGG 3 cut(s) 48, 977, 1241
BsaWI WCCGGW 1 cut(s) 1399
BsaXI ACNNNNNCTCC 2 cut(s) 625, 655
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 203
Bse1I ACTGG 6 cut(s) 116, 629, 742, 844, 1108, 1544
Bse3DI GCAATG 1 cut(s) 527
BseBI CCWGG 1 cut(s) 1188
BseDI CCNNGG 3 cut(s) 48, 977, 1241
BseLI CCNNNNNNNGG 2 cut(s) 111, 203
BseMI GCAATG 1 cut(s) 527
BseMII CTCAG 3 cut(s) 154, 407, 721
BseNI ACTGG 6 cut(s) 116, 629, 742, 844, 1108, 1544
BsgI GTGCAG 1 cut(s) 1485
BshFI GGCC 3 cut(s) 47, 316, 1107
BshNI GGYRCC 1 cut(s) 651
BsiHKAI GWGCWC 1 cut(s) 1627
BsiHKCI CYCGRG 1 cut(s) 802
BsiSI CCGG 1 cut(s) 1400
BslI CCNNNNNNNGG 2 cut(s) 111, 203
BsmI GAATGC 2 cut(s) 1454, 1574
BsnI GGCC 3 cut(s) 47, 316, 1107
BsoBI CYCGRG 1 cut(s) 802
Bsp119I TTCGAA 1 cut(s) 1517
Bsp1286I GDGCHC 1 cut(s) 1627
Bsp143I GATC 8 cut(s) 149, 361, 436, 643, 897, 943, 1146, 1391
Bsp19I CCATGG 1 cut(s) 1241
BspACI CCGC 2 cut(s) 1533, 1620
BspANI GGCC 3 cut(s) 47, 316, 1107
BspCNI CTCAG 3 cut(s) 153, 408, 720
BspLI GGNNCC 3 cut(s) 46, 151, 653
BspPI GGATC 4 cut(s) 144, 157, 905, 1399
BspT104I TTCGAA 1 cut(s) 1517
BspT107I GGYRCC 1 cut(s) 651
BsrBI CCGCTC 1 cut(s) 1533
BsrDI GCAATG 1 cut(s) 527
BsrI ACTGG 6 cut(s) 116, 629, 742, 844, 1108, 1544
BssECI CCNNGG 3 cut(s) 48, 977, 1241
BssMI GATC 8 cut(s) 149, 361, 436, 643, 897, 943, 1146, 1391
BssT1I CCWWGG 2 cut(s) 48, 1241
Bst2UI CCWGG 1 cut(s) 1188
Bst4CI ACNGT 2 cut(s) 404, 782
Bst6I CTCTTC 1 cut(s) 198
BstBI TTCGAA 1 cut(s) 1517
BstC8I GCNNGC 3 cut(s) 341, 1005, 1212
BstDEI CTNAG 7 cut(s) 126, 140, 416, 638, 647, 707, 1156
BstDSI CCRYGG 1 cut(s) 1241
BstKTI GATC 8 cut(s) 152, 364, 439, 646, 900, 946, 1149, 1394
BstMBI GATC 8 cut(s) 149, 361, 436, 643, 897, 943, 1146, 1391
BstNI CCWGG 1 cut(s) 1188
BstSCI CCNGG 1 cut(s) 1186
BstX2I RGATCY 2 cut(s) 149, 361
BstXI CCANNNNNNTGG 2 cut(s) 608, 749
BstYI RGATCY 2 cut(s) 149, 361
BsuI GTATCC 1 cut(s) 1605
BsuRI GGCC 3 cut(s) 47, 316, 1107
BtgI CCRYGG 1 cut(s) 1241
BtgZI GCGATG 1 cut(s) 1229
BtsIMutI CAGTG 7 cut(s) 46, 109, 787, 837, 1093, 1180, 1551
Cac8I GCNNGC 3 cut(s) 341, 1005, 1212
Cfr13I GGNCC 5 cut(s) 45, 239, 314, 586, 1510
Csp6I GTAC 8 cut(s) 93, 207, 431, 652, 721, 834, 1010, 1184
CspCI CAANNNNNGTGG 2 cut(s) 1156, 1191
CviAII CATG 5 cut(s) 467, 749, 1242, 1303, 1374
CviQI GTAC 8 cut(s) 93, 207, 431, 652, 721, 834, 1010, 1184
DdeI CTNAG 7 cut(s) 126, 140, 416, 638, 647, 707, 1156
DpnI GATC 8 cut(s) 151, 363, 438, 645, 899, 945, 1148, 1393
DpnII GATC 8 cut(s) 149, 361, 436, 643, 897, 943, 1146, 1391
DraI TTTAAA 1 cut(s) 1116
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco130I CCWWGG 2 cut(s) 48, 1241
Eco32I GATATC 1 cut(s) 422
Eco47I GGWCC 3 cut(s) 239, 586, 1510
Eco88I CYCGRG 1 cut(s) 802
EcoRII CCWGG 1 cut(s) 1186
EcoRV GATATC 1 cut(s) 422
EcoT14I CCWWGG 2 cut(s) 48, 1241
EcoT22I ATGCAT 1 cut(s) 1456
ErhI CCWWGG 2 cut(s) 48, 1241
FaeI CATG 5 cut(s) 470, 752, 1245, 1306, 1377
FatI CATG 5 cut(s) 466, 748, 1241, 1302, 1373
FblI GTMKAC 1 cut(s) 406
Fnu4HI GCNGC 1 cut(s) 1647
Fsp4HI GCNGC 1 cut(s) 1647
GluI GCNGC 1 cut(s) 1647
GsuI CTGGAG 2 cut(s) 133, 861
HaeIII GGCC 3 cut(s) 47, 316, 1107
HapII CCGG 1 cut(s) 1400
Hin1II CATG 5 cut(s) 470, 752, 1245, 1306, 1377
HincII GTYRAC 1 cut(s) 1366
HindII GTYRAC 1 cut(s) 1366
HinfI GANTC 6 cut(s) 634, 680, 908, 973, 1502, 1582
HpaII CCGG 1 cut(s) 1400
HphI GGTGA 4 cut(s) 1190, 1286, 1348, 1348
Hpy166II GTNNAC 2 cut(s) 407, 1366
Hpy188I TCNGA 3 cut(s) 511, 595, 933
Hpy8I GTNNAC 2 cut(s) 407, 1366
HpyAV CCTTC 5 cut(s) 14, 85, 305, 705, 1268
HpyCH4III ACNGT 2 cut(s) 404, 782
HpyF3I CTNAG 7 cut(s) 126, 140, 416, 638, 647, 707, 1156
Hsp92II CATG 5 cut(s) 470, 752, 1245, 1306, 1377
KpnI GGTACC 1 cut(s) 655
Kzo9I GATC 8 cut(s) 149, 361, 436, 643, 897, 943, 1146, 1391
LmnI GCTCC 2 cut(s) 1330, 1549
LweI GCATC 2 cut(s) 1420, 1633
MaeIII GTNAC 3 cut(s) 299, 1253, 1484
MalI GATC 8 cut(s) 151, 363, 438, 645, 899, 945, 1148, 1393
MbiI CCGCTC 1 cut(s) 1533
MboI GATC 8 cut(s) 149, 361, 436, 643, 897, 943, 1146, 1391
MboII GAAGA 4 cut(s) 185, 258, 360, 1345
MfeI CAATTG 2 cut(s) 1129, 1598
MflI RGATCY 2 cut(s) 149, 361
MhlI GDGCHC 1 cut(s) 1627
MlyI GAGTC 2 cut(s) 643, 1511
MmeI TCCRAC 2 cut(s) 762, 1470
Mph1103I ATGCAT 1 cut(s) 1456
MseI TTAA 7 cut(s) 99, 380, 716, 1019, 1115, 1346, 1481
MspI CCGG 1 cut(s) 1400
MspR9I CCNGG 1 cut(s) 1188
MunI CAATTG 2 cut(s) 1129, 1598
Mva1269I GAATGC 2 cut(s) 1454, 1574
MvaI CCWGG 1 cut(s) 1188
NcoI CCATGG 1 cut(s) 1241
NdeII GATC 8 cut(s) 149, 361, 436, 643, 897, 943, 1146, 1391
NlaIII CATG 5 cut(s) 470, 752, 1245, 1306, 1377
NlaIV GGNNCC 3 cut(s) 46, 151, 653
NsiI ATGCAT 1 cut(s) 1456
NspV TTCGAA 1 cut(s) 1517
PaeR7I CTCGAG 1 cut(s) 802
PctI GAATGC 2 cut(s) 1454, 1574
PfeI GAWTC 4 cut(s) 680, 908, 973, 1582
PflMI CCANNNNNTGG 1 cut(s) 111
PkrI GCNGC 1 cut(s) 1648
PleI GAGTC 2 cut(s) 642, 1510
PpsI GAGTC 2 cut(s) 642, 1510
PshBI ATTAAT 1 cut(s) 99
PsiI TTATAA 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 1186
PspGI CCWGG 1 cut(s) 1186
PspN4I GGNNCC 3 cut(s) 46, 151, 653
PspPI GGNCC 5 cut(s) 45, 239, 314, 586, 1510
PsuI RGATCY 2 cut(s) 149, 361
RsaI GTAC 8 cut(s) 94, 208, 432, 653, 722, 835, 1011, 1185
RsaNI GTAC 8 cut(s) 93, 207, 431, 652, 721, 834, 1010, 1184
SaqAI TTAA 7 cut(s) 99, 380, 716, 1019, 1115, 1346, 1481
SatI GCNGC 1 cut(s) 1647
Sau3AI GATC 8 cut(s) 149, 361, 436, 643, 897, 943, 1146, 1391
Sau96I GGNCC 5 cut(s) 45, 239, 314, 586, 1510
ScaI AGTACT 2 cut(s) 94, 1011
SchI GAGTC 2 cut(s) 643, 1511
ScrFI CCNGG 1 cut(s) 1188
SduI GDGCHC 1 cut(s) 1627
SfaNI GCATC 2 cut(s) 1420, 1633
Sfr274I CTCGAG 1 cut(s) 802
SfuI TTCGAA 1 cut(s) 1517
SinI GGWCC 3 cut(s) 239, 586, 1510
SlaI CTCGAG 1 cut(s) 802
SmlI CTYRAG 3 cut(s) 556, 802, 1489
SmoI CTYRAG 3 cut(s) 556, 802, 1489
SsiI CCGC 2 cut(s) 1533, 1620
SspI AATATT 1 cut(s) 1342
StyD4I CCNGG 1 cut(s) 1186
StyI CCWWGG 2 cut(s) 48, 1241
TaaI ACNGT 2 cut(s) 404, 782
TaqI TCGA 4 cut(s) 162, 803, 878, 1517
TatI WGTACW 3 cut(s) 92, 430, 1009
TfiI GAWTC 4 cut(s) 680, 908, 973, 1582
Tru1I TTAA 7 cut(s) 99, 380, 716, 1019, 1115, 1346, 1481
Tru9I TTAA 7 cut(s) 99, 380, 716, 1019, 1115, 1346, 1481
TscAI CASTG 7 cut(s) 46, 116, 787, 844, 1093, 1180, 1551
TseI GCWGC 1 cut(s) 1646
TspDTI ATGAA 2 cut(s) 432, 737
TspGWI ACGGA 4 cut(s) 21, 1241, 1351, 1404
TspRI CASTG 7 cut(s) 46, 116, 787, 844, 1093, 1180, 1551
Van91I CCANNNNNTGG 1 cut(s) 111
VpaK11BI GGWCC 3 cut(s) 239, 586, 1510
VspI ATTAAT 1 cut(s) 99
XapI RAATTY 2 cut(s) 252, 551
XbaI TCTAGA 5 cut(s) 211, 307, 358, 685, 793
XhoI CTCGAG 1 cut(s) 802
XmiI GTMKAC 1 cut(s) 406
ZrmI AGTACT 2 cut(s) 94, 1011
Zsp2I ATGCAT 1 cut(s) 1456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.