Rh1DG279100

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0014124
Physical Location & Seq
Reverse (-)
50061114 .. 50064579
3466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG279100.1

Sequence Viewer

Length: 948 bp
ATGCCGAAGCGAAAGCAGCGAACCGGAGCCGTTCAGCCTCTGAAGACGCAGAAGCGTATGCGAAGGGCCAAGCCGATTTGCTCTTGCACCTCTCCTCGTTTCACTTCTTCTGGCCCCGCCTTCACCTGTTACGAGCAGGACGTCTGGACGGAGATCGCAAAGTTTCTGGACGGAAAGTCACTGGTGATGCTCGCTGCGACATGTCGTTGGTTCCACGCGCTGGTCGAGGACGGGAGCATATGGAGGTACTTGTGCTTGCGTGATCTTCAGGTCCCTGCTCCTCGCCACCCGGCGGCGTTTGATTGGAAGAAGCTCTACATTTCCGCTTTCAATGGGAGTCACTCTTACATGTTCCGCCAGCCGGAGAAGCATATCGACTGGACGCGTATCGGTGCATTTTTCCTGGAATCTTCTTCAGTACTCCTAACAGAAAGGCTGAGCACCCCACCGAAATTCCCCAAGGAAGATAGCATTCAGAAAATGTTGGAGTCGAGCGGCAGTTGTGTGTTGAGCAATGTGAAACCTGGGATATGGATTGCAGATCTCCAGCTTGTTCGATGCCCTGTCTGCGAGCTCAATACTTGCGATGGAACAATGCAGACATTGGATGCAAGGCATATTGAACTGTTCTTGAGTGAGGGATACCAGGATGGTAGCTGGGAATATGAACTTATTGGAATTCAGGATGTCAAAAAGCATGTTGAGGGTGCTTCTGGAGCTATTTTCGATGTCAAACACCTCAAAGACTCTTCAACTTCAGTCTTCAACCTCAAGTCATGGGTCGGGAAACCGAATGACTGGCAACCGAAGGCTGTGATCACAATGCATGCAGTTGCTGTCAACACAAATCTGCAGAGAAATGAAGGCCTGCAAGTCAAATACCATATGATGAGAGCTGGAGCTGGAGGAGAAGTTGTATCTATTCGAATCTCGCAGCAGCTTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

315

Amino Acids

35.64

Weight (kDa)

9.08

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 47 - 87 1.3e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61730 AT5G36000
fragaria_vesca FvH4_7g16360 FvH4_7g16360
malus_domestica MD01G1080100.v1.1 MD07G1149100.v1.1
prunus_persica Prupe.2G187500_v2.0.a1
pyrus_communis pycom01g10840
rosa_chinensis RchiOBHm_Chr1g0359371
rosa_laevigata RLG00000027875
rosa_multiflora Rmu_co8499881.1_g000001
rosa_rugosa Rorug01G0270600
rosa_samantha Rh1AG284100 Rh1BG250200 Rh1CG268100 Rh1DG279100
rosa_wichuraiana Rw1G025220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 144
AccB7I CCANNNNNTGG 1 cut(s) 220
AccBSI CCGCTC 1 cut(s) 495
AccII CGCG 2 cut(s) 218, 385
AciI CCGC 5 cut(s) 117, 293, 324, 355, 495
AcsI RAATTY 2 cut(s) 452, 678
AcuI CTGAAG 4 cut(s) 62, 251, 399, 741
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 2 cut(s) 248, 420
AfiI CCNNNNNNNGG 3 cut(s) 220, 292, 361
AflIII ACRYGT 3 cut(s) 200, 348, 383
AgsI TTSAA 4 cut(s) 331, 623, 753, 766
AhdI GACNNNNNGTC 1 cut(s) 175
AjnI CCWGG 3 cut(s) 402, 523, 645
AluBI AGCT 8 cut(s) 313, 550, 574, 657, 719, 896, 902, 940
AluI AGCT 8 cut(s) 313, 550, 574, 657, 719, 896, 902, 940
Alw21I GWGCWC 2 cut(s) 443, 576
AlwNI CAGNNNCTG 3 cut(s) 40, 836, 943
AoxI GGCC 3 cut(s) 66, 112, 865
ApeKI GCWGC 4 cut(s) 16, 194, 934, 937
ApoI RAATTY 2 cut(s) 452, 678
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 3 cut(s) 66, 113, 271
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 2 cut(s) 115, 196
AsuII TTCGAA 1 cut(s) 925
AvaII GGWCC 1 cut(s) 271
BanII GRGCYC 1 cut(s) 576
BarI GAAGNNNNNNTAC 2 cut(s) 299, 331
BbsI GAAGAC 2 cut(s) 50, 754
Bbv12I GWGCWC 2 cut(s) 443, 576
BbvI GCAGC 2 cut(s) 28, 181
BccI CCATC 2 cut(s) 581, 644
BceAI ACGGC 1 cut(s) 14
BciT130I CCWGG 3 cut(s) 404, 525, 647
BciVI GTATCC 1 cut(s) 635
BclI TGATCA 1 cut(s) 816
BcnI CCSGG 1 cut(s) 290
BfmI CTRYAG 2 cut(s) 851, 944
BfuI GTATCC 1 cut(s) 635
BglII AGATCT 1 cut(s) 541
BisI GCNGC 6 cut(s) 17, 195, 294, 496, 935, 938
BlpI GCTNAGC 1 cut(s) 437
BlsI GCNGC 6 cut(s) 18, 196, 295, 497, 936, 939
BmcAI AGTACT 1 cut(s) 420
Bme1390I CCNGG 4 cut(s) 290, 404, 525, 647
Bme18I GGWCC 1 cut(s) 271
BmeRI GACNNNNNGTC 1 cut(s) 175
BmgT120I GGNCC 3 cut(s) 66, 113, 271
BmiI GGNNCC 4 cut(s) 28, 115, 212, 273
BmrFI CCNGG 4 cut(s) 290, 404, 525, 647
BmsI GCATC 3 cut(s) 177, 548, 598
BpiI GAAGAC 2 cut(s) 50, 754
BpmI CTGGAG 4 cut(s) 530, 735, 918, 924
Bpu1102I GCTNAGC 1 cut(s) 437
Bpu14I TTCGAA 1 cut(s) 925
BpuEI CTTGAG 2 cut(s) 652, 755
BpuMI CCSGG 1 cut(s) 290
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 2 cut(s) 459, 524
BsaWI WCCGGW 1 cut(s) 23
BsaXI ACNNNNNCTCC 4 cut(s) 897, 900, 927, 930
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 292, 361
Bse1I ACTGG 3 cut(s) 186, 383, 803
Bse3DI GCAATG 1 cut(s) 520
BseBI CCWGG 3 cut(s) 404, 525, 647
BseDI CCNNGG 2 cut(s) 459, 524
BseGI GGATG 3 cut(s) 613, 655, 691
BseLI CCNNNNNNNGG 3 cut(s) 220, 292, 361
BseMI GCAATG 1 cut(s) 520
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 3 cut(s) 186, 383, 803
BseRI GAGGAG 3 cut(s) 84, 270, 921
BseXI GCAGC 2 cut(s) 28, 181
BseYI CCCAGC 1 cut(s) 657
Bsh1236I CGCG 2 cut(s) 218, 385
BshFI GGCC 3 cut(s) 68, 114, 867
BsiHKAI GWGCWC 2 cut(s) 443, 576
BsiSI CCGG 3 cut(s) 24, 290, 362
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 3 cut(s) 220, 292, 361
BsmFI GGGAC 1 cut(s) 257
BsmI GAATGC 1 cut(s) 471
BsnI GGCC 3 cut(s) 68, 114, 867
Bsp119I TTCGAA 1 cut(s) 925
Bsp1286I GDGCHC 2 cut(s) 443, 576
Bsp143I GATC 4 cut(s) 153, 262, 541, 816
Bsp1720I GCTNAGC 1 cut(s) 437
BspACI CCGC 5 cut(s) 117, 293, 324, 355, 495
BspANI GGCC 3 cut(s) 68, 114, 867
BspCNI CTCAG 1 cut(s) 429
BspFNI CGCG 2 cut(s) 218, 385
BspLI GGNNCC 4 cut(s) 28, 115, 212, 273
BspMAI CTGCAG 1 cut(s) 855
BspT104I TTCGAA 1 cut(s) 925
BsrBI CCGCTC 1 cut(s) 495
BsrDI GCAATG 1 cut(s) 520
BsrI ACTGG 3 cut(s) 186, 383, 803
BssECI CCNNGG 2 cut(s) 459, 524
BssMI GATC 4 cut(s) 153, 262, 541, 816
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 459
Bst2UI CCWGG 3 cut(s) 404, 525, 647
Bst4CI ACNGT 1 cut(s) 627
Bst6I CTCTTC 1 cut(s) 754
BstACI GRCGYC 1 cut(s) 141
BstBI TTCGAA 1 cut(s) 925
BstC8I GCNNGC 6 cut(s) 192, 257, 359, 572, 828, 869
BstDEI CTNAG 1 cut(s) 437
BstF5I GGATG 3 cut(s) 613, 655, 691
BstFNI CGCG 2 cut(s) 218, 385
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 4 cut(s) 156, 265, 544, 819
BstMBI GATC 4 cut(s) 153, 262, 541, 816
BstMWI GCNNNNNNNGC 4 cut(s) 16, 367, 567, 716
BstNI CCWGG 3 cut(s) 404, 525, 647
BstNSI RCATGY 4 cut(s) 204, 352, 701, 830
BstSCI CCNGG 4 cut(s) 288, 402, 523, 645
BstSFI CTRYAG 2 cut(s) 851, 944
BstUI CGCG 2 cut(s) 218, 385
BstV1I GCAGC 2 cut(s) 28, 181
BstV2I GAAGAC 2 cut(s) 50, 754
BstX2I RGATCY 1 cut(s) 541
BstYI RGATCY 1 cut(s) 541
BsuI GTATCC 1 cut(s) 635
BsuRI GGCC 3 cut(s) 68, 114, 867
BtgZI GCGATG 1 cut(s) 600
BtsCI GGATG 3 cut(s) 613, 655, 691
BtsIMutI CAGTG 1 cut(s) 179
Cac8I GCNNGC 6 cut(s) 192, 257, 359, 572, 828, 869
CaiI CAGNNNCTG 3 cut(s) 40, 836, 943
CfoI GCGC 1 cut(s) 220
Cfr13I GGNCC 3 cut(s) 66, 113, 271
CseI GACGC 2 cut(s) 55, 391
Csp6I GTAC 2 cut(s) 247, 419
CviAII CATG 5 cut(s) 201, 349, 698, 777, 827
CviQI GTAC 2 cut(s) 247, 419
DdeI CTNAG 1 cut(s) 437
DpnI GATC 4 cut(s) 155, 264, 543, 818
DpnII GATC 4 cut(s) 153, 262, 541, 816
DriI GACNNNNNGTC 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 754
Eam1105I GACNNNNNGTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 754
EciI GGCGGA 1 cut(s) 344
Ecl136II GAGCTC 1 cut(s) 574
Eco130I CCWWGG 1 cut(s) 459
Eco147I AGGCCT 1 cut(s) 867
Eco24I GRGCYC 1 cut(s) 576
Eco47I GGWCC 1 cut(s) 271
Eco53kI GAGCTC 1 cut(s) 574
Eco57I CTGAAG 4 cut(s) 62, 251, 399, 741
EcoICRI GAGCTC 1 cut(s) 574
EcoO109I RGGNCCY 1 cut(s) 271
EcoRI GAATTC 1 cut(s) 678
EcoRII CCWGG 3 cut(s) 402, 523, 645
EcoT14I CCWWGG 1 cut(s) 459
EcoT22I ATGCAT 1 cut(s) 828
EcoT38I GRGCYC 1 cut(s) 576
ErhI CCWWGG 1 cut(s) 459
FaeI CATG 5 cut(s) 204, 352, 701, 780, 830
FaqI GGGAC 1 cut(s) 257
FatI CATG 5 cut(s) 200, 348, 697, 776, 826
FauI CCCGC 1 cut(s) 124
FauNDI CATATG 2 cut(s) 239, 885
FbaI TGATCA 1 cut(s) 816
Fnu4HI GCNGC 6 cut(s) 17, 195, 294, 496, 935, 938
FokI GGATG 3 cut(s) 620, 662, 698
FriOI GRGCYC 1 cut(s) 576
Fsp4HI GCNGC 6 cut(s) 17, 195, 294, 496, 935, 938
GlaI GCGC 1 cut(s) 219
GluI GCNGC 6 cut(s) 17, 195, 294, 496, 935, 938
GsaI CCCAGC 1 cut(s) 661
GsuI CTGGAG 4 cut(s) 530, 735, 918, 924
HaeIII GGCC 3 cut(s) 68, 114, 867
HapII CCGG 3 cut(s) 24, 290, 362
HgaI GACGC 2 cut(s) 55, 391
HhaI GCGC 1 cut(s) 220
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 5 cut(s) 204, 352, 701, 780, 830
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HincII GTYRAC 1 cut(s) 841
HindII GTYRAC 1 cut(s) 841
HinfI GANTC 5 cut(s) 337, 407, 488, 746, 927
HpaII CCGG 3 cut(s) 24, 290, 362
HphI GGTGA 2 cut(s) 115, 196
Hpy166II GTNNAC 1 cut(s) 841
Hpy188I TCNGA 2 cut(s) 42, 477
Hpy188III TCNNGA 6 cut(s) 145, 167, 631, 683, 714, 784
Hpy8I GTNNAC 1 cut(s) 841
HpyAV CCTTC 4 cut(s) 57, 130, 802, 857
HpyCH4III ACNGT 1 cut(s) 627
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 9 cut(s) 87, 395, 539, 598, 611, 826, 830, 853, 871
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 367, 567, 716
HpyF3I CTNAG 1 cut(s) 437
HpySE526I ACGT 1 cut(s) 141
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 5 cut(s) 204, 352, 701, 780, 830
HspAI GCGC 1 cut(s) 218
Ksp22I TGATCA 1 cut(s) 816
Kzo9I GATC 4 cut(s) 153, 262, 541, 816
LmnI GCTCC 5 cut(s) 26, 234, 283, 716, 899
Lsp1109I GCAGC 2 cut(s) 28, 181
LweI GCATC 3 cut(s) 177, 548, 598
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 3 cut(s) 128, 177, 338
MalI GATC 4 cut(s) 155, 264, 543, 818
MbiI CCGCTC 1 cut(s) 495
MboI GATC 4 cut(s) 153, 262, 541, 816
MboII GAAGA 9 cut(s) 55, 99, 257, 319, 402, 405, 476, 741, 754
MflI RGATCY 1 cut(s) 541
MhlI GDGCHC 2 cut(s) 443, 576
MluCI AATT 2 cut(s) 452, 678
MluI ACGCGT 1 cut(s) 383
MlyI GAGTC 3 cut(s) 346, 497, 740
MmeI TCCRAC 1 cut(s) 465
Mph1103I ATGCAT 1 cut(s) 828
MspI CCGG 3 cut(s) 24, 290, 362
MspR9I CCNGG 4 cut(s) 290, 404, 525, 647
Mva1269I GAATGC 1 cut(s) 471
MvaI CCWGG 3 cut(s) 404, 525, 647
MvnI CGCG 2 cut(s) 218, 385
MwoI GCNNNNNNNGC 4 cut(s) 16, 367, 567, 716
NciI CCSGG 1 cut(s) 290
NdeI CATATG 2 cut(s) 239, 885
NdeII GATC 4 cut(s) 153, 262, 541, 816
NlaIII CATG 5 cut(s) 204, 352, 701, 780, 830
NlaIV GGNNCC 4 cut(s) 28, 115, 212, 273
NmuCI GTSAC 2 cut(s) 177, 338
NsiI ATGCAT 1 cut(s) 828
NspI RCATGY 4 cut(s) 204, 352, 701, 830
NspV TTCGAA 1 cut(s) 925
PaeI GCATGC 1 cut(s) 830
PceI AGGCCT 1 cut(s) 867
PciI ACATGT 2 cut(s) 200, 348
PcsI WCGNNNNNNNCGW 2 cut(s) 138, 222
PctI GAATGC 1 cut(s) 471
PfeI GAWTC 2 cut(s) 407, 927
PflMI CCANNNNNTGG 1 cut(s) 220
PfoI TCCNGGA 1 cut(s) 402
PkrI GCNGC 6 cut(s) 18, 196, 295, 497, 936, 939
PleI GAGTC 3 cut(s) 345, 496, 740
PpsI GAGTC 3 cut(s) 345, 496, 740
PpuMI RGGWCCY 1 cut(s) 271
PscI ACATGT 2 cut(s) 200, 348
Psp124BI GAGCTC 1 cut(s) 576
Psp5II RGGWCCY 1 cut(s) 271
Psp6I CCWGG 3 cut(s) 402, 523, 645
PspFI CCCAGC 1 cut(s) 657
PspGI CCWGG 3 cut(s) 402, 523, 645
PspN4I GGNNCC 4 cut(s) 28, 115, 212, 273
PspPI GGNCC 3 cut(s) 66, 113, 271
PspPPI RGGWCCY 1 cut(s) 271
PstI CTGCAG 1 cut(s) 855
PstNI CAGNNNCTG 3 cut(s) 40, 836, 943
PsuI RGATCY 1 cut(s) 541
RsaI GTAC 2 cut(s) 248, 420
RsaNI GTAC 2 cut(s) 247, 419
SacI GAGCTC 1 cut(s) 576
SatI GCNGC 6 cut(s) 17, 195, 294, 496, 935, 938
Sau3AI GATC 4 cut(s) 153, 262, 541, 816
Sau96I GGNCC 3 cut(s) 66, 113, 271
ScaI AGTACT 1 cut(s) 420
SchI GAGTC 3 cut(s) 346, 497, 740
ScrFI CCNGG 4 cut(s) 290, 404, 525, 647
SduI GDGCHC 2 cut(s) 443, 576
SfaNI GCATC 3 cut(s) 177, 548, 598
SfcI CTRYAG 2 cut(s) 851, 944
SfuI TTCGAA 1 cut(s) 925
SinI GGWCC 1 cut(s) 271
SmlI CTYRAG 2 cut(s) 631, 770
SmoI CTYRAG 2 cut(s) 631, 770
SphI GCATGC 1 cut(s) 830
Sse9I AATT 2 cut(s) 452, 678
SseBI AGGCCT 1 cut(s) 867
SsiI CCGC 5 cut(s) 117, 293, 324, 355, 495
SstI GAGCTC 1 cut(s) 576
StuI AGGCCT 1 cut(s) 867
StyD4I CCNGG 4 cut(s) 288, 402, 523, 645
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 1 cut(s) 627
TaiI ACGT 1 cut(s) 144
TaqI TCGA 6 cut(s) 225, 375, 491, 556, 726, 925
TasI AATT 2 cut(s) 452, 678
TatI WGTACW 1 cut(s) 418
TauI GCSGC 2 cut(s) 296, 498
TfiI GAWTC 2 cut(s) 407, 927
TscAI CASTG 1 cut(s) 186
TseFI GTSAC 2 cut(s) 177, 338
TseI GCWGC 4 cut(s) 16, 194, 934, 937
Tsp45I GTSAC 2 cut(s) 177, 338
TspDTI ATGAA 2 cut(s) 681, 876
TspGWI ACGGA 2 cut(s) 164, 186
TspRI CASTG 1 cut(s) 186
Van91I CCANNNNNTGG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 2 cut(s) 452, 678
XceI RCATGY 4 cut(s) 204, 352, 701, 830
ZraI GACGTC 1 cut(s) 142
ZrmI AGTACT 1 cut(s) 420
Zsp2I ATGCAT 1 cut(s) 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.