Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004057

Physical Location & Seq

Genomic Coordinates Reverse (-)

22957054 .. 22959018

Gene Structure 1965 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G61990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGACGACGTTTTCAACGAGCTTTCTTTTCCTTTTGTTGGTTTTCTGCTTGATCGGTTCACTAGCTGCCGATGATCTCCAACATAAATCCGGTCGGGACGTCTGCTCCGGTGGTTCTGATCTTAGAACCCCCGATATTCGTCTTAACCGGCCGACAGACTCTGTCGTCGGAAACTGCCCGACGGAGGCGAGTCCTTTAGTTATGGCTGACGACGAGAAGTACGGTAACAAAATGGTTATCAGTCTCACTCCTCGCCTTTATGACTATGTCCTCAACAACGTTCGTGAGCATGAGATTTTGAAGCAACTTCGAGAAGAAACTGCCATTAGTCAAATTCAGGTGTCACCTGATCAAGCGCAATTGCTTGCAATGCTTGTAGAGATTCTTGGAGCTAAACGATGTATTGAAGTTGGAGTTTACACGGGATATTCATCACTGGCTGTGGCGTTGGTTCTACCAGAATCAGGGCGTCTTGTTGCCTGTGATAAAGATGCTAACGCTCTTGAAGTTGCTAAGAGGTACTACGAGCTTGCCGGAGTGTCTCACAAGGTCACTGTGAAACATGGTCTTGCAGCAGAATCTTTGATGTCTATGATTCAGAACGGTGAAGAGTCCAGCTATGATTTTGCATTTCTTGATGCTGATAAGGCGATGTATCAGGAGTACTTCGAATCGCTACTTCGACTCGTCAGGGTTGGTGGAGTCATTGTGATTGATAATGTTCTTTGGCATGGATGGGTTGCGGATTCTACGGTGAATGATGAGAGGACCATCAGCCTAAGAAATTTCAACAAAAAATTAATGGATGATCAACGTGTAAGCATTAGTATGGTATCAATCGGCGATGGTATGACCATATGCCGCAAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

290

Amino Acids

32.17

Weight (kDa)

5.23

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	94 - 289	1.8e-70	O-methyltransferase
Methyltransf_24	PF13578	135 - 241	3.5e-13	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61990 AT3G62000 AT3G62000
fragaria_vesca	FvH4_3g16510
malus_domestica	MD05G1209400.v1.1
prunus_persica	Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1
pyrus_communis	pycom05g19550
rosa_chinensis	RchiOBHm_Chr5g0027561
rosa_laevigata	RLG00000033026
rosa_multiflora	Rmu_sc0001647.1_g000001 Rmu_sc0011056.1_g000008
rosa_roxburghii	Rroxscaffold_1G00051980
rosa_samantha	Rh5AG193900 Rh5BG191900 Rh5CG212100 Rh5DG193800
rosa_wichuraiana	Rw5G017680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AatII	GACGTC	1 cut(s)	102
AciI	CCGC	2 cut(s)	743, 862
AclI	AACGTT	1 cut(s)	279
AcoI	YGGCCR	1 cut(s)	149
AcsI	RAATTY	2 cut(s)	333, 784
AcyI	GRCGYC	2 cut(s)	99, 469
AfaI	GTAC	3 cut(s)	221, 521, 665
AfiI	CCNNNNNNNGG	3 cut(s)	37, 184, 464
AflIII	ACRYGT	1 cut(s)	814
AgsI	TTSAA	5 cut(s)	15, 301, 407, 506, 790
AluBI	AGCT	5 cut(s)	21, 65, 392, 529, 618
AluI	AGCT	5 cut(s)	21, 65, 392, 529, 618
Alw26I	GTCTC	2 cut(s)	248, 546
AlwNI	CAGNNNCTG	1 cut(s)	161
AoxI	GGCC	1 cut(s)	149
ApeKI	GCWGC	2 cut(s)	65, 572
ApoI	RAATTY	2 cut(s)	333, 784
AseI	ATTAAT	1 cut(s)	800
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	1 cut(s)	768
AsuHPI	GGTGA	3 cut(s)	336, 617, 766
AsuII	TTCGAA	1 cut(s)	669
AvaII	GGWCC	1 cut(s)	768
BbvI	GCAGC	2 cut(s)	52, 584
BccI	CCATC	3 cut(s)	729, 779, 839
BclI	TGATCA	2 cut(s)	349, 808
BcoDI	GTCTC	2 cut(s)	248, 546
BfaI	CTAG	1 cut(s)	62
BisI	GCNGC	3 cut(s)	66, 573, 862
BlsI	GCNGC	3 cut(s)	67, 574, 863
BmcAI	AGTACT	1 cut(s)	665
Bme18I	GGWCC	1 cut(s)	768
BmgT120I	GGNCC	1 cut(s)	768
BmsI	GCATC	2 cut(s)	481, 628
Bpu14I	TTCGAA	1 cut(s)	669
BsaBI	GATNNNNATC	1 cut(s)	430
BsaHI	GRCGYC	2 cut(s)	99, 469
BsaWI	WCCGGW	2 cut(s)	89, 107
BsaXI	ACNNNNNCTCC	4 cut(s)	89, 119, 693, 723
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 184, 464
Bse118I	RCCGGY	1 cut(s)	147
Bse1I	ACTGG	1 cut(s)	441
Bse3DI	GCAATG	1 cut(s)	375
Bse8I	GATNNNNATC	1 cut(s)	430
BseGI	GGATG	2 cut(s)	740, 811
BseJI	GATNNNNATC	1 cut(s)	430
BseLI	CCNNNNNNNGG	3 cut(s)	37, 184, 464
BseMI	GCAATG	1 cut(s)	375
BseNI	ACTGG	1 cut(s)	441
BseRI	GAGGAG	1 cut(s)	240
BseX3I	CGGCCG	1 cut(s)	149
BseXI	GCAGC	2 cut(s)	52, 584
Bsh1285I	CGRYCG	2 cut(s)	94, 152
BshFI	GGCC	1 cut(s)	151
BsiEI	CGRYCG	2 cut(s)	94, 152
BsiSI	CCGG	4 cut(s)	90, 108, 148, 534
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	3 cut(s)	37, 184, 464
BsmAI	GTCTC	2 cut(s)	248, 546
BsmFI	GGGAC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	151
Bsp119I	TTCGAA	1 cut(s)	669
Bsp143I	GATC	5 cut(s)	51, 73, 118, 349, 808
BspACI	CCGC	2 cut(s)	743, 862
BspANI	GGCC	1 cut(s)	151
BspT104I	TTCGAA	1 cut(s)	669
BsrDI	GCAATG	1 cut(s)	375
BsrFI	RCCGGY	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	441
BssAI	RCCGGY	1 cut(s)	147
BssMI	GATC	5 cut(s)	51, 73, 118, 349, 808
BssNI	GRCGYC	2 cut(s)	99, 469
Bst4CI	ACNGT	4 cut(s)	224, 556, 605, 754
Bst6I	CTCTTC	1 cut(s)	603
BstACI	GRCGYC	2 cut(s)	99, 469
BstBI	TTCGAA	1 cut(s)	669
BstC8I	GCNNGC	2 cut(s)	366, 531
BstDEI	CTNAG	3 cut(s)	122, 513, 779
BstF5I	GGATG	2 cut(s)	740, 811
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	5 cut(s)	54, 76, 121, 352, 811
BstMAI	GTCTC	2 cut(s)	248, 546
BstMBI	GATC	5 cut(s)	51, 73, 118, 349, 808
BstMCI	CGRYCG	2 cut(s)	94, 152
BstMWI	GCNNNNNNNGC	2 cut(s)	370, 647
BstV1I	GCAGC	2 cut(s)	52, 584
BstZI	CGGCCG	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	151
BtgZI	GCGATG	2 cut(s)	665, 858
BtsCI	GGATG	2 cut(s)	740, 811
BtsIMutI	CAGTG	2 cut(s)	434, 552
Cac8I	GCNNGC	2 cut(s)	366, 531
CaiI	CAGNNNCTG	1 cut(s)	161
CfoI	GCGC	1 cut(s)	358
Cfr10I	RCCGGY	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	768
CseI	GACGC	1 cut(s)	458
Csp6I	GTAC	3 cut(s)	220, 520, 664
CviAII	CATG	3 cut(s)	290, 563, 731
CviJI	RGCY	9 cut(s)	21, 65, 151, 206, 392, 440, 529, 618, 777
CviKI_1	RGCY	9 cut(s)	21, 65, 151, 206, 392, 440, 529, 618, 777
CviQI	GTAC	3 cut(s)	220, 520, 664
DdeI	CTNAG	3 cut(s)	122, 513, 779
DpnI	GATC	5 cut(s)	53, 75, 120, 351, 810
DpnII	GATC	5 cut(s)	51, 73, 118, 349, 808
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	1 cut(s)	149
EagI	CGGCCG	1 cut(s)	149
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
EclXI	CGGCCG	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	768
Eco52I	CGGCCG	1 cut(s)	149
FaeI	CATG	3 cut(s)	293, 566, 734
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	3 cut(s)	289, 562, 730
FauNDI	CATATG	1 cut(s)	857
FbaI	TGATCA	2 cut(s)	349, 808
Fnu4HI	GCNGC	3 cut(s)	66, 573, 862
FokI	GGATG	2 cut(s)	747, 818
Fsp4HI	GCNGC	3 cut(s)	66, 573, 862
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	3 cut(s)	66, 573, 862
HaeIII	GGCC	1 cut(s)	151
HapII	CCGG	4 cut(s)	90, 108, 148, 534
HgaI	GACGC	1 cut(s)	458
HhaI	GCGC	1 cut(s)	358
Hin1I	GRCGYC	2 cut(s)	99, 469
Hin1II	CATG	3 cut(s)	293, 566, 734
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HpaII	CCGG	4 cut(s)	90, 108, 148, 534
HphI	GGTGA	3 cut(s)	336, 617, 766
Hpy166II	GTNNAC	2 cut(s)	59, 418
Hpy188I	TCNGA	3 cut(s)	118, 170, 600
Hpy188III	TCNNGA	6 cut(s)	95, 284, 311, 503, 635, 659
Hpy8I	GTNNAC	2 cut(s)	59, 418
Hpy99I	CGWCG	4 cut(s)	10, 170, 184, 215
HpyCH4III	ACNGT	4 cut(s)	224, 556, 605, 754
HpyCH4IV	ACGT	4 cut(s)	8, 99, 279, 814
HpyCH4V	TGCA	3 cut(s)	368, 572, 629
HpyF10VI	GCNNNNNNNGC	2 cut(s)	370, 647
HpyF3I	CTNAG	3 cut(s)	122, 513, 779
HpySE526I	ACGT	4 cut(s)	8, 99, 279, 814
Hsp92I	GRCGYC	2 cut(s)	99, 469
Hsp92II	CATG	3 cut(s)	293, 566, 734
HspAI	GCGC	1 cut(s)	356
Ksp22I	TGATCA	2 cut(s)	349, 808
Kzo9I	GATC	5 cut(s)	51, 73, 118, 349, 808
LmnI	GCTCC	2 cut(s)	110, 389
Lsp1109I	GCAGC	2 cut(s)	52, 584
LweI	GCATC	2 cut(s)	481, 628
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	4 cut(s)	8, 99, 279, 814
MaeIII	GTNAC	3 cut(s)	224, 342, 550
MalI	GATC	5 cut(s)	53, 75, 120, 351, 810
MboI	GATC	5 cut(s)	51, 73, 118, 349, 808
MboII	GAAGA	2 cut(s)	326, 620
MfeI	CAATTG	1 cut(s)	359
MluCI	AATT	4 cut(s)	333, 359, 784, 797
MlyI	GAGTC	5 cut(s)	152, 199, 620, 678, 711
MmeI	TCCRAC	3 cut(s)	103, 148, 391
MnlI	CCTC	6 cut(s)	178, 261, 281, 510, 759, 861
MseI	TTAA	2 cut(s)	144, 800
MslI	CAYNNNNRTG	1 cut(s)	827
MspI	CCGG	4 cut(s)	90, 108, 148, 534
MunI	CAATTG	1 cut(s)	359
MwoI	GCNNNNNNNGC	2 cut(s)	370, 647
NdeI	CATATG	1 cut(s)	857
NdeII	GATC	5 cut(s)	51, 73, 118, 349, 808
NlaIII	CATG	3 cut(s)	293, 566, 734
NmuCI	GTSAC	2 cut(s)	342, 550
NspV	TTCGAA	1 cut(s)	669
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	6 cut(s)	382, 461, 578, 595, 671, 746
PflFI	GACNNNGTC	2 cut(s)	161, 266
PkrI	GCNGC	3 cut(s)	67, 574, 863
PleI	GAGTC	5 cut(s)	152, 198, 619, 678, 710
PpsI	GAGTC	5 cut(s)	152, 198, 619, 678, 710
PshBI	ATTAAT	1 cut(s)	800
Psp1406I	AACGTT	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	768
PstNI	CAGNNNCTG	1 cut(s)	161
PsyI	GACNNNGTC	2 cut(s)	161, 266
RsaI	GTAC	3 cut(s)	221, 521, 665
RsaNI	GTAC	3 cut(s)	220, 520, 664
RseI	CAYNNNNRTG	1 cut(s)	827
SaqAI	TTAA	2 cut(s)	144, 800
SatI	GCNGC	3 cut(s)	66, 573, 862
Sau3AI	GATC	5 cut(s)	51, 73, 118, 349, 808
Sau96I	GGNCC	1 cut(s)	768
ScaI	AGTACT	1 cut(s)	665
SchI	GAGTC	5 cut(s)	152, 199, 620, 678, 711
SfaNI	GCATC	2 cut(s)	481, 628
SfuI	TTCGAA	1 cut(s)	669
SinI	GGWCC	1 cut(s)	768
SmiMI	CAYNNNNRTG	1 cut(s)	827
Sse9I	AATT	4 cut(s)	333, 359, 784, 797
SsiI	CCGC	2 cut(s)	743, 862
SspMI	CTAG	1 cut(s)	62
TaaI	ACNGT	4 cut(s)	224, 556, 605, 754
TaiI	ACGT	4 cut(s)	11, 102, 282, 817
TaqI	TCGA	3 cut(s)	310, 669, 682
TasI	AATT	4 cut(s)	333, 359, 784, 797
TatI	WGTACW	1 cut(s)	663
TauI	GCSGC	1 cut(s)	864
TfiI	GAWTC	6 cut(s)	382, 461, 578, 595, 671, 746
Tru1I	TTAA	2 cut(s)	144, 800
Tru9I	TTAA	2 cut(s)	144, 800
TscAI	CASTG	2 cut(s)	441, 559
TseFI	GTSAC	2 cut(s)	342, 550
TseI	GCWGC	2 cut(s)	65, 572
Tsp45I	GTSAC	2 cut(s)	342, 550
TspDTI	ATGAA	1 cut(s)	420
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	2 cut(s)	441, 559
Tth111I	GACNNNGTC	2 cut(s)	161, 266
VpaK11BI	GGWCC	1 cut(s)	768
VspI	ATTAAT	1 cut(s)	800
XapI	RAATTY	2 cut(s)	333, 784
XspI	CTAG	1 cut(s)	62
ZraI	GACGTC	1 cut(s)	100
ZrmI	AGTACT	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.