Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004057

Physical Location & Seq

Genomic Coordinates Reverse (-)

10424421 .. 10427691

Gene Structure 3271 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g16510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGGGAGCACAAGCCTGGGGCTTCATCGGTGGCCTATGTTAACTTGCCAGGGAGTACTTCTTCAACAAAGATCTGTGCAACTACGACCAAATTTTGGTTCGTTGTCCTCAGGGAGGTGTAGTACAGGCTTCAGAGCTTGCAGCAGCAAGTTAAAGACGAGCATAAAAGGTTGTGCCCCCAGTGCATTTGTTGTTGCTGATGATAAGAAGTATGGGAACAAGCAGATTATCAGTATTACTCCGCGGCTTTATGATTACATCCTTGACAATGTTCGAGAACCAGAGGTTCTACGAAAACTTAGGGAAGAGACTGCCTCTATGCGTGGTAGTATGATGCAGGTGTCCCCTGACCAGGCACAACTGCTTGCAATGCTTGTACAGATTCATGGGGCAGAAAAGTGTATTGAAGTTGGTGTATATACAGGTTATTCATCATTGGCTATTGCATTGGTCCTTCCAGAATCAGGTAGGTTAGTAGCTTGTGAAAGAGATGCCAGATGTCTTGAGGTTGCAAAGAAGTATTACGAAAAAGCCAATGTTTCCCACAAGGTGGATATTAGATATGGACTTGCAGTAGATACCTTAAGATCACTGATTCTCAACGATGAAGCATGTAGCTATGATTTTGCATTTGTTGATGCTGACAAGAGAATGTATCCAGAATACTTTGAATTATTGCTCCAACTCGTGAGGGTTGGGGGTCTAATTGTATTTGATAATGTTCTCTGGCATGGAAAAGTTGCTGATCCAGAGGTAAATGATGCCAAGACAGTTAGCATTAGAAACTTCAATGCTGATTTAATGGAGGATAAGCGTGTAAGCATTAGTATGGTACCCATCGGGGATGGCATGACAATCTGTCGAAAACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

291

Amino Acids

32.36

Weight (kDa)

8.66

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	92 - 289	1.2e-72	O-methyltransferase
Methyltransf_24	PF13578	135 - 241	1.7e-11	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61990 AT3G62000 AT3G62000
fragaria_vesca	FvH4_3g16510
malus_domestica	MD05G1209400.v1.1
prunus_persica	Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1
pyrus_communis	pycom05g19550
rosa_chinensis	RchiOBHm_Chr5g0027561
rosa_laevigata	RLG00000033026
rosa_multiflora	Rmu_sc0001647.1_g000001 Rmu_sc0011056.1_g000008
rosa_roxburghii	Rroxscaffold_1G00051980
rosa_samantha	Rh5AG193900 Rh5BG191900 Rh5CG212100 Rh5DG193800
rosa_wichuraiana	Rw5G017680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	328
Acc36I	ACCTGC	1 cut(s)	328
Acc65I	GGTACC	1 cut(s)	832
AccB1I	GGYRCC	1 cut(s)	832
AccB7I	CCANNNNNTGG	2 cut(s)	95, 550
AccII	CGCG	1 cut(s)	244
AciI	CCGC	2 cut(s)	242, 244
AclI	AACGTT	1 cut(s)	868
AclWI	GGATC	1 cut(s)	740
AcsI	RAATTY	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	115
AdeI	CACNNNGTG	1 cut(s)	550
AfaI	GTAC	4 cut(s)	57, 124, 378, 834
AfiI	CCNNNNNNNGG	5 cut(s)	95, 114, 352, 464, 550
AflII	CTTAAG	1 cut(s)	583
AgsI	TTSAA	4 cut(s)	65, 407, 671, 790
AhdI	GACNNNNNGTC	1 cut(s)	858
AjnI	CCWGG	3 cut(s)	15, 48, 351
AjuI	GAANNNNNNNTTGG	2 cut(s)	82, 114
AluBI	AGCT	3 cut(s)	137, 479, 618
AluI	AGCT	3 cut(s)	137, 479, 618
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	1 cut(s)	740
AoxI	GGCC	1 cut(s)	32
ApeKI	GCWGC	2 cut(s)	141, 144
ApoI	RAATTY	1 cut(s)	91
Asp718I	GGTACC	1 cut(s)	832
AspS9I	GGNCC	1 cut(s)	451
AvaII	GGWCC	1 cut(s)	451
AxyI	CCTNAGG	1 cut(s)	109
BaeGI	GKGCMC	1 cut(s)	178
BanI	GGYRCC	1 cut(s)	832
BauI	CACGAG	1 cut(s)	686
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	153, 156
BccI	CCATC	2 cut(s)	839, 845
BciT130I	CCWGG	3 cut(s)	17, 50, 353
BciVI	GTATCC	1 cut(s)	666
BcoDI	GTCTC	1 cut(s)	302
BfrI	CTTAAG	1 cut(s)	583
BfuAI	ACCTGC	1 cut(s)	328
BfuI	GTATCC	1 cut(s)	666
BglII	AGATCT	1 cut(s)	71
BisI	GCNGC	3 cut(s)	142, 145, 245
BlsI	GCNGC	3 cut(s)	143, 146, 246
BmcAI	AGTACT	1 cut(s)	57
Bme1390I	CCNGG	3 cut(s)	17, 50, 353
Bme18I	GGWCC	1 cut(s)	451
BmeRI	GACNNNNNGTC	1 cut(s)	858
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	1 cut(s)	834
BmrFI	CCNGG	3 cut(s)	17, 50, 353
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	4 cut(s)	324, 481, 628, 751
BmuI	ACTGGG	1 cut(s)	174
BplI	GAGNNNNNCTC	2 cut(s)	299, 331
BpuEI	CTTGAG	1 cut(s)	524
BsaJI	CCNNGG	3 cut(s)	16, 49, 242
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	5 cut(s)	95, 114, 352, 464, 550
Bse1I	ACTGG	1 cut(s)	180
Bse21I	CCTNAGG	1 cut(s)	109
Bse3DI	GCAATG	1 cut(s)	375
BseBI	CCWGG	3 cut(s)	17, 50, 353
BseDI	CCNNGG	3 cut(s)	16, 49, 242
BseGI	GGATG	2 cut(s)	258, 850
BseLI	CCNNNNNNNGG	5 cut(s)	95, 114, 352, 464, 550
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	180
BseSI	GKGCMC	1 cut(s)	178
BseXI	GCAGC	2 cut(s)	153, 156
Bsh1236I	CGCG	1 cut(s)	244
BshFI	GGCC	1 cut(s)	34
BshNI	GGYRCC	1 cut(s)	832
BsiHKAI	GWGCWC	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	5 cut(s)	95, 114, 352, 464, 550
BsmAI	GTCTC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	328
BsnI	GGCC	1 cut(s)	34
Bsp1286I	GDGCHC	2 cut(s)	11, 178
Bsp1407I	TGTACA	1 cut(s)	376
Bsp143I	GATC	3 cut(s)	71, 587, 745
BspACI	CCGC	2 cut(s)	242, 244
BspANI	GGCC	1 cut(s)	34
BspCNI	CTCAG	1 cut(s)	122
BspFNI	CGCG	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	834
BspMI	ACCTGC	1 cut(s)	328
BspPI	GGATC	1 cut(s)	740
BspT107I	GGYRCC	1 cut(s)	832
BspTI	CTTAAG	1 cut(s)	583
BsrDI	GCAATG	1 cut(s)	375
BsrGI	TGTACA	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	180
BssECI	CCNNGG	3 cut(s)	16, 49, 242
BssMI	GATC	3 cut(s)	71, 587, 745
BssSI	CACGAG	1 cut(s)	686
Bst2BI	CACGAG	1 cut(s)	686
Bst2UI	CCWGG	3 cut(s)	17, 50, 353
Bst4CI	ACNGT	1 cut(s)	772
Bst6I	CTCTTC	1 cut(s)	300
BstAFI	CTTAAG	1 cut(s)	583
BstAUI	TGTACA	1 cut(s)	376
BstC8I	GCNNGC	2 cut(s)	139, 366
BstDEI	CTNAG	2 cut(s)	109, 299
BstDSI	CCRYGG	1 cut(s)	242
BstENI	CCTNNNNNAGG	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	258, 850
BstFNI	CGCG	1 cut(s)	244
BstKTI	GATC	3 cut(s)	74, 590, 748
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	3 cut(s)	71, 587, 745
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 370
BstNI	CCWGG	3 cut(s)	17, 50, 353
BstNSI	RCATGY	1 cut(s)	615
BstSCI	CCNGG	3 cut(s)	15, 48, 351
BstSLI	GKGCMC	1 cut(s)	178
BstUI	CGCG	1 cut(s)	244
BstV1I	GCAGC	2 cut(s)	153, 156
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
Bsu36I	CCTNAGG	1 cut(s)	109
BsuI	GTATCC	1 cut(s)	666
BsuRI	GGCC	1 cut(s)	34
BtgI	CCRYGG	1 cut(s)	242
BtsCI	GGATG	2 cut(s)	258, 850
BtsIMutI	CAGTG	2 cut(s)	187, 590
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	2 cut(s)	139, 366
Cfr13I	GGNCC	1 cut(s)	451
Cfr42I	CCGCGG	1 cut(s)	245
Csp6I	GTAC	4 cut(s)	56, 123, 377, 833
CviAII	CATG	4 cut(s)	386, 612, 731, 850
CviQI	GTAC	4 cut(s)	56, 123, 377, 833
DdeI	CTNAG	2 cut(s)	109, 299
DpnI	GATC	3 cut(s)	73, 589, 747
DpnII	GATC	3 cut(s)	71, 587, 745
DraIII	CACNNNGTG	1 cut(s)	550
DriI	GACNNNNNGTC	1 cut(s)	858
Eam1104I	CTCTTC	1 cut(s)	300
Eam1105I	GACNNNNNGTC	1 cut(s)	858
EarI	CTCTTC	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	115
Eco81I	CCTNAGG	1 cut(s)	109
EcoNI	CCTNNNNNAGG	1 cut(s)	112
EcoRII	CCWGG	3 cut(s)	15, 48, 351
FaeI	CATG	4 cut(s)	389, 615, 734, 853
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	4 cut(s)	385, 611, 730, 849
Fnu4HI	GCNGC	3 cut(s)	142, 145, 245
FokI	GGATG	2 cut(s)	245, 857
Fsp4HI	GCNGC	3 cut(s)	142, 145, 245
GluI	GCNGC	3 cut(s)	142, 145, 245
HaeIII	GGCC	1 cut(s)	34
Hin1II	CATG	4 cut(s)	389, 615, 734, 853
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	3 cut(s)	382, 461, 595
HpaI	GTTAAC	1 cut(s)	42
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	1 cut(s)	134
Hpy188III	TCNNGA	6 cut(s)	275, 458, 503, 659, 688, 749
Hpy8I	GTNNAC	1 cut(s)	42
HpyAV	CCTTC	1 cut(s)	464
HpyCH4III	ACNGT	1 cut(s)	772
HpyCH4IV	ACGT	1 cut(s)	868
HpyCH4V	TGCA	9 cut(s)	79, 141, 185, 337, 368, 446, 512, 572, 629
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 370
HpyF3I	CTNAG	2 cut(s)	109, 299
HpySE526I	ACGT	1 cut(s)	868
Hsp92II	CATG	4 cut(s)	389, 615, 734, 853
KpnI	GGTACC	1 cut(s)	836
KspAI	GTTAAC	1 cut(s)	42
KspI	CCGCGG	1 cut(s)	245
Kzo9I	GATC	3 cut(s)	71, 587, 745
LmnI	GCTCC	2 cut(s)	6, 684
Lsp1109I	GCAGC	2 cut(s)	153, 156
LweI	GCATC	4 cut(s)	324, 481, 628, 751
MaeII	ACGT	1 cut(s)	868
MalI	GATC	3 cut(s)	73, 589, 747
MboI	GATC	3 cut(s)	71, 587, 745
MboII	GAAGA	2 cut(s)	53, 317
MflI	RGATCY	1 cut(s)	71
MhlI	GDGCHC	2 cut(s)	11, 178
MluCI	AATT	3 cut(s)	91, 671, 705
MmeI	TCCRAC	1 cut(s)	706
MnlI	CCTC	8 cut(s)	108, 118, 277, 325, 499, 684, 745, 799
MseI	TTAA	4 cut(s)	41, 152, 584, 800
MslI	CAYNNNNRTG	1 cut(s)	827
MspA1I	CMGCKG	1 cut(s)	244
MspCI	CTTAAG	1 cut(s)	583
MspR9I	CCNGG	3 cut(s)	17, 50, 353
MvaI	CCWGG	3 cut(s)	17, 50, 353
MvnI	CGCG	1 cut(s)	244
MwoI	GCNNNNNNNGC	2 cut(s)	182, 370
NdeII	GATC	3 cut(s)	71, 587, 745
NlaIII	CATG	4 cut(s)	389, 615, 734, 853
NlaIV	GGNNCC	1 cut(s)	834
NspI	RCATGY	1 cut(s)	615
PaqCI	CACCTGC	1 cut(s)	328
PfeI	GAWTC	3 cut(s)	382, 461, 595
PflMI	CCANNNNNTGG	2 cut(s)	95, 550
PkrI	GCNGC	3 cut(s)	143, 146, 246
Psp1406I	AACGTT	1 cut(s)	868
Psp6I	CCWGG	3 cut(s)	15, 48, 351
PspGI	CCWGG	3 cut(s)	15, 48, 351
PspN4I	GGNNCC	1 cut(s)	834
PspPI	GGNCC	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	71
RsaI	GTAC	4 cut(s)	57, 124, 378, 834
RsaNI	GTAC	4 cut(s)	56, 123, 377, 833
RseI	CAYNNNNRTG	1 cut(s)	827
SacII	CCGCGG	1 cut(s)	245
SaqAI	TTAA	4 cut(s)	41, 152, 584, 800
SatI	GCNGC	3 cut(s)	142, 145, 245
Sau3AI	GATC	3 cut(s)	71, 587, 745
Sau96I	GGNCC	1 cut(s)	451
ScaI	AGTACT	1 cut(s)	57
ScrFI	CCNGG	3 cut(s)	17, 50, 353
SduI	GDGCHC	2 cut(s)	11, 178
SfaNI	GCATC	4 cut(s)	324, 481, 628, 751
Sfr303I	CCGCGG	1 cut(s)	245
SgrBI	CCGCGG	1 cut(s)	245
SinI	GGWCC	1 cut(s)	451
SmiMI	CAYNNNNRTG	1 cut(s)	827
SmlI	CTYRAG	2 cut(s)	503, 583
SmoI	CTYRAG	2 cut(s)	503, 583
Sse9I	AATT	3 cut(s)	91, 671, 705
SsiI	CCGC	2 cut(s)	242, 244
StyD4I	CCNGG	3 cut(s)	15, 48, 351
TaaI	ACNGT	1 cut(s)	772
TaiI	ACGT	1 cut(s)	871
TaqI	TCGA	2 cut(s)	274, 862
TasI	AATT	3 cut(s)	91, 671, 705
TatI	WGTACW	3 cut(s)	55, 122, 376
TauI	GCSGC	1 cut(s)	247
TfiI	GAWTC	3 cut(s)	382, 461, 595
Tru1I	TTAA	4 cut(s)	41, 152, 584, 800
Tru9I	TTAA	4 cut(s)	41, 152, 584, 800
TscAI	CASTG	2 cut(s)	187, 597
TseI	GCWGC	2 cut(s)	141, 144
TspDTI	ATGAA	4 cut(s)	14, 374, 420, 621
TspRI	CASTG	2 cut(s)	187, 597
Van91I	CCANNNNNTGG	2 cut(s)	95, 550
Vha464I	CTTAAG	1 cut(s)	583
VpaK11BI	GGWCC	1 cut(s)	451
XagI	CCTNNNNNAGG	1 cut(s)	112
XapI	RAATTY	1 cut(s)	91
XceI	RCATGY	1 cut(s)	615
ZrmI	AGTACT	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.