Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004057

Physical Location & Seq

Genomic Coordinates Forward (+)

34097139 .. 34100658

Gene Structure 3520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1209400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGGGAGCAGCAACAGCTTGGGGATTCATTCTTGGTCTATCTTAGCGCCTCAGCGGGTAATTCTTCCGCAAAAATCCGTACCAAAGTCCCATTCTTTGTCCCCAACTGTCACCGTTTCTAGCATTGCCACCAACAAGACCTGCTCTGAGAGGTACCCAATACCAAGAGGTTGCTTGGGATTTGCTGCATTCACCAGAAAGGTAAATAAGACCATAAGAGGATGTGCTACCAGCCCATTTGTTGTTGCCAATGATGAAAAGTATGGAAACAAGCAGATTATCAGTATTACTCCACGCCTTTACGACTACATCCTTGCCAATGTTCGAGAGCCAGAGGTTCTACAACAACTTAGGGAGGAGACTGCCTCTATGCGTGGTAGTCAGATGCAGGTGTCTCCTGATCAGGCTCAACTGCTTGCAATGCTTGTGCAGATTCATGGGGCTGAAAAGTGTATTGAAGTTGGCGTTTATACCGGATATTCATCATTGGCTATTGCACTGGCTCTTCCAGAATCCGGTAGGTTAGTAGCCTGCGAAAGAGATTACAGAAGTCTCGAGGTGGCAAAAAAGTATTATGATCAAGCCAATATTTCCCACAAGGTGCATGTTAAATATGGACTTGCAGCAGATTCCTTGAGATCATTGATTCTGAACGGTGAAGCATGTAGCTATGATTTCGCATTTGTTGACGCTGACAAGAAGATGTACCAGGAATACTTTGAACTGTTACTACAACTTGTGAGAGTTGGGGGTCTAATTGTGTTCGATAATGTCCTCTGGCACGGAAAAGTTGCTGACCCTGAGGTAAACGATGCCAAGACTGTCAGCATCAGAAATTTCAATACAAGTATAATGGAGGACAAGCGTGTAAGCATTAGTATGGTACCCATTGGAGATGGCATGACAATCTGCCGAAAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

308

Amino Acids

34.06

Weight (kDa)

8.86

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	108 - 306	2.5e-71	O-methyltransferase
Methyltransf_24	PF13578	152 - 258	1.1e-12	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61990 AT3G62000 AT3G62000
fragaria_vesca	FvH4_3g16510
malus_domestica	MD05G1209400.v1.1
prunus_persica	Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1
pyrus_communis	pycom05g19550
rosa_chinensis	RchiOBHm_Chr5g0027561
rosa_laevigata	RLG00000033026
rosa_multiflora	Rmu_sc0001647.1_g000001 Rmu_sc0011056.1_g000008
rosa_roxburghii	Rroxscaffold_1G00051980
rosa_samantha	Rh5AG193900 Rh5BG191900 Rh5CG212100 Rh5DG193800
rosa_wichuraiana	Rw5G017680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	379
Acc36I	ACCTGC	2 cut(s)	149, 379
Acc65I	GGTACC	2 cut(s)	153, 883
AccB1I	GGYRCC	2 cut(s)	153, 883
AciI	CCGC	2 cut(s)	55, 68
AcsI	RAATTY	1 cut(s)	835
AdeI	CACNNNGTG	1 cut(s)	601
AfaI	GTAC	4 cut(s)	81, 155, 707, 885
AfiI	CCNNNNNNNGG	1 cut(s)	515
AgsI	TTSAA	3 cut(s)	458, 722, 841
AjnI	CCWGG	1 cut(s)	708
AjuI	GAANNNNNNNTTGG	2 cut(s)	76, 108
AluBI	AGCT	2 cut(s)	18, 669
AluI	AGCT	2 cut(s)	18, 669
Alw26I	GTCTC	3 cut(s)	353, 399, 557
Ama87I	CYCGRG	1 cut(s)	554
ApeKI	GCWGC	3 cut(s)	9, 185, 623
ApoI	RAATTY	1 cut(s)	835
Asp718I	GGTACC	2 cut(s)	153, 883
AspLEI	GCGC	1 cut(s)	49
AsuHPI	GGTGA	3 cut(s)	103, 184, 668
AvaI	CYCGRG	1 cut(s)	554
AxyI	CCTNAGG	1 cut(s)	801
BanI	GGYRCC	2 cut(s)	153, 883
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	3 cut(s)	21, 172, 635
BccI	CCATC	1 cut(s)	890
BciT130I	CCWGG	1 cut(s)	710
BclI	TGATCA	2 cut(s)	400, 577
BcoDI	GTCTC	3 cut(s)	353, 399, 557
BfaI	CTAG	1 cut(s)	120
BfoI	RGCGCY	1 cut(s)	50
BfuAI	ACCTGC	2 cut(s)	149, 379
BisI	GCNGC	3 cut(s)	10, 186, 624
BlsI	GCNGC	3 cut(s)	11, 187, 625
Bme1390I	CCNGG	1 cut(s)	710
BmeT110I	CYCGRG	1 cut(s)	554
BmiI	GGNNCC	2 cut(s)	155, 885
BmrFI	CCNGG	1 cut(s)	710
BmsI	GCATC	3 cut(s)	375, 802, 837
BplI	GAGNNNNNCTC	2 cut(s)	350, 382
Bpu10I	CCTNAGC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	655
BsaBI	GATNNNNATC	1 cut(s)	481
BsaWI	WCCGGW	2 cut(s)	473, 515
Bsc4I	CCNNNNNNNGG	1 cut(s)	515
Bse1I	ACTGG	1 cut(s)	504
Bse21I	CCTNAGG	1 cut(s)	801
Bse3DI	GCAATG	2 cut(s)	123, 426
Bse8I	GATNNNNATC	1 cut(s)	481
BseBI	CCWGG	1 cut(s)	710
BseGI	GGATG	2 cut(s)	227, 309
BseJI	GATNNNNATC	1 cut(s)	481
BseLI	CCNNNNNNNGG	1 cut(s)	515
BseMI	GCAATG	2 cut(s)	123, 426
BseMII	CTCAG	3 cut(s)	65, 138, 792
BseNI	ACTGG	1 cut(s)	504
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	3 cut(s)	21, 172, 635
BsgI	GTGCAG	1 cut(s)	449
BshNI	GGYRCC	2 cut(s)	153, 883
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	2 cut(s)	474, 516
BslFI	GGGAC	2 cut(s)	73, 85
BslI	CCNNNNNNNGG	1 cut(s)	515
BsmAI	GTCTC	3 cut(s)	353, 399, 557
BsmFI	GGGAC	2 cut(s)	73, 85
BsmI	GAATGC	1 cut(s)	188
BsoBI	CYCGRG	1 cut(s)	554
Bsp143I	GATC	3 cut(s)	400, 577, 638
BspACI	CCGC	2 cut(s)	55, 68
BspCNI	CTCAG	3 cut(s)	64, 139, 793
BspLI	GGNNCC	2 cut(s)	155, 885
BspMI	ACCTGC	2 cut(s)	149, 379
BspQI	GCTCTTC	1 cut(s)	510
BspT107I	GGYRCC	2 cut(s)	153, 883
BsrDI	GCAATG	2 cut(s)	123, 426
BsrI	ACTGG	1 cut(s)	504
BssMI	GATC	3 cut(s)	400, 577, 638
Bst2UI	CCWGG	1 cut(s)	710
Bst4CI	ACNGT	5 cut(s)	109, 115, 656, 726, 823
Bst6I	CTCTTC	1 cut(s)	510
BstC8I	GCNNGC	2 cut(s)	417, 532
BstDEI	CTNAG	5 cut(s)	43, 51, 147, 350, 801
BstF5I	GGATG	2 cut(s)	227, 309
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	3 cut(s)	403, 580, 641
BstMAI	GTCTC	3 cut(s)	353, 399, 557
BstMBI	GATC	3 cut(s)	400, 577, 638
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 421
BstNI	CCWGG	1 cut(s)	710
BstNSI	RCATGY	2 cut(s)	608, 666
BstSCI	CCNGG	1 cut(s)	708
BstV1I	GCAGC	3 cut(s)	21, 172, 635
Bsu36I	CCTNAGG	1 cut(s)	801
BtsCI	GGATG	2 cut(s)	227, 309
BtsIMutI	CAGTG	1 cut(s)	497
BveI	ACCTGC	2 cut(s)	149, 379
Cac8I	GCNNGC	2 cut(s)	417, 532
CfoI	GCGC	1 cut(s)	49
CseI	GACGC	1 cut(s)	698
Csp6I	GTAC	4 cut(s)	80, 154, 706, 884
CviAII	CATG	4 cut(s)	437, 605, 663, 901
CviQI	GTAC	4 cut(s)	80, 154, 706, 884
DdeI	CTNAG	5 cut(s)	43, 51, 147, 350, 801
DpnI	GATC	3 cut(s)	402, 579, 640
DpnII	GATC	3 cut(s)	400, 577, 638
DraIII	CACNNNGTG	1 cut(s)	601
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
Eco81I	CCTNAGG	1 cut(s)	801
Eco88I	CYCGRG	1 cut(s)	554
EcoRII	CCWGG	1 cut(s)	708
FaeI	CATG	4 cut(s)	440, 608, 666, 904
FaqI	GGGAC	2 cut(s)	73, 85
FatI	CATG	4 cut(s)	436, 604, 662, 900
FauI	CCCGC	1 cut(s)	48
FbaI	TGATCA	2 cut(s)	400, 577
Fnu4HI	GCNGC	3 cut(s)	10, 186, 624
FokI	GGATG	2 cut(s)	234, 296
Fsp4HI	GCNGC	3 cut(s)	10, 186, 624
FspBI	CTAG	1 cut(s)	120
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	3 cut(s)	10, 186, 624
HaeII	RGCGCY	1 cut(s)	50
HapII	CCGG	2 cut(s)	474, 516
HgaI	GACGC	1 cut(s)	698
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	4 cut(s)	440, 608, 666, 904
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HinfI	GANTC	5 cut(s)	25, 433, 512, 629, 646
HpaII	CCGG	2 cut(s)	474, 516
HphI	GGTGA	3 cut(s)	103, 184, 668
Hpy166II	GTNNAC	2 cut(s)	688, 808
Hpy188I	TCNGA	4 cut(s)	148, 384, 651, 833
Hpy188III	TCNNGA	4 cut(s)	326, 398, 509, 554
Hpy8I	GTNNAC	2 cut(s)	688, 808
HpyCH4III	ACNGT	5 cut(s)	109, 115, 656, 726, 823
HpyCH4V	TGCA	7 cut(s)	188, 388, 419, 430, 497, 604, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 421
HpyF3I	CTNAG	5 cut(s)	43, 51, 147, 350, 801
Hsp92II	CATG	4 cut(s)	440, 608, 666, 904
HspAI	GCGC	1 cut(s)	47
KpnI	GGTACC	2 cut(s)	157, 887
Ksp22I	TGATCA	2 cut(s)	400, 577
Kzo9I	GATC	3 cut(s)	400, 577, 638
LguI	GCTCTTC	1 cut(s)	510
LmnI	GCTCC	1 cut(s)	6
Lsp1109I	GCAGC	3 cut(s)	21, 172, 635
LweI	GCATC	3 cut(s)	375, 802, 837
MaeI	CTAG	1 cut(s)	120
MaeIII	GTNAC	2 cut(s)	109, 726
MalI	GATC	3 cut(s)	402, 579, 640
MboI	GATC	3 cut(s)	400, 577, 638
MboII	GAAGA	3 cut(s)	56, 497, 712
MluCI	AATT	3 cut(s)	60, 756, 835
MseI	TTAA	1 cut(s)	609
MslI	CAYNNNNRTG	1 cut(s)	878
MspA1I	CMGCKG	1 cut(s)	55
MspI	CCGG	2 cut(s)	474, 516
MspR9I	CCNGG	1 cut(s)	710
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	710
MwoI	GCNNNNNNNGC	2 cut(s)	15, 421
NdeII	GATC	3 cut(s)	400, 577, 638
NlaIII	CATG	4 cut(s)	440, 608, 666, 904
NlaIV	GGNNCC	2 cut(s)	155, 885
NmuCI	GTSAC	1 cut(s)	109
NspI	RCATGY	2 cut(s)	608, 666
PaeR7I	CTCGAG	1 cut(s)	554
PaqCI	CACCTGC	1 cut(s)	379
PciSI	GCTCTTC	1 cut(s)	510
PctI	GAATGC	1 cut(s)	188
PfeI	GAWTC	5 cut(s)	25, 433, 512, 629, 646
PkrI	GCNGC	3 cut(s)	11, 187, 625
Psp6I	CCWGG	1 cut(s)	708
PspGI	CCWGG	1 cut(s)	708
PspN4I	GGNNCC	2 cut(s)	155, 885
PsrI	GAACNNNNNNTAC	2 cut(s)	714, 746
RsaI	GTAC	4 cut(s)	81, 155, 707, 885
RsaNI	GTAC	4 cut(s)	80, 154, 706, 884
RseI	CAYNNNNRTG	1 cut(s)	878
SapI	GCTCTTC	1 cut(s)	510
SaqAI	TTAA	1 cut(s)	609
SatI	GCNGC	3 cut(s)	10, 186, 624
Sau3AI	GATC	3 cut(s)	400, 577, 638
ScrFI	CCNGG	1 cut(s)	710
SfaNI	GCATC	3 cut(s)	375, 802, 837
Sfr274I	CTCGAG	1 cut(s)	554
SlaI	CTCGAG	1 cut(s)	554
SmiMI	CAYNNNNRTG	1 cut(s)	878
SmlI	CTYRAG	2 cut(s)	554, 634
SmoI	CTYRAG	2 cut(s)	554, 634
Sse9I	AATT	3 cut(s)	60, 756, 835
SsiI	CCGC	2 cut(s)	55, 68
SspI	AATATT	1 cut(s)	589
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	708
TaaI	ACNGT	5 cut(s)	109, 115, 656, 726, 823
TaqI	TCGA	3 cut(s)	325, 555, 765
TasI	AATT	3 cut(s)	60, 756, 835
TfiI	GAWTC	5 cut(s)	25, 433, 512, 629, 646
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TscAI	CASTG	1 cut(s)	504
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	3 cut(s)	9, 185, 623
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	4 cut(s)	17, 270, 425, 471
TspGWI	ACGGA	2 cut(s)	67, 798
TspRI	CASTG	1 cut(s)	504
XapI	RAATTY	1 cut(s)	835
XceI	RCATGY	2 cut(s)	608, 666
XhoI	CTCGAG	1 cut(s)	554
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.