Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004057

Physical Location & Seq

Genomic Coordinates Reverse (-)

22357755 .. 22360829

Gene Structure 3075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033026

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTTTGACGGCCACGTCCAGCCAAAGAGGACTGGTGTGACTGGTCCGAGGGCGAAGCCGAGTGCAAACGGAAGATCCCAAACCCAGTCTGCCACTCTGCTCTGCCACATTGTCTTTATGGGAAGCACGAGCTTGGGGCTTCATCGATGGCCTATCTTAGCTTGTCAGCGAGTACTTCTTCCACAAAGATCTGCGCAACGACAACCAAAGTTTTATTCTTTGTCCTGGGAGAGGTGTCATAGAGGTGGCATTGGCTTCGGAACTTGCAGCAGCAAGTTAAAAACGAGCATTAGAGGTTGTGCCACCAATGCATTTGTTGTTGCTGATGATAAGAAGTATGGGAACAAGCAGATTATCAGTGTTACTCCGCGGCTTTACGATTACATCCTTGCCAACGTACGAGAGCCAGAGGTTCTACGACAACTTAGGGAGGAGACTGCCTCCATGCGTGGTAATATGATGCAGGTGTCTCCTGACCAGGCACAACTGCTTGCAATGCTTGTGCAAATTCATGGGGCAGACAAGTGTATTGAAGTTGGTGTATATACAGGTTATTCATCATTGGCTATTGCATTGGTCCTTCCAGAATCAGGTAGGTTAGTAGCTTGTGAAAGAGATGCCAAAAGTCTTGAGGTTGCAAAAAAGTATTACGAAAAAGCCAATGTTTCCCACAAGGTGGATATTAGATATGGACTTGCAGCAGATACCTTAAGATCACTGATTCTGAACGGTGAAGCATGTAGCTATGATTTTGCATTTGTTGATGCTGACAAGAGAATGTATCCAGAATACTTTGAATTGTTGCTCCAACTCGTGAGGGTTGGGGGTCTAATTGTGTTTGATAATGTCCTCTGGCATGGAAAAGTTGCTGATCCAGAGGTAAATGATGCCAAGACTGTCAGCATTAGAAATTTCAATGCTGATTTAATGGAGGACAAGCGTGTAAGCATTAGTATGGTACCCATCGGGGATGGCATGACAATCTGTCGAAAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

333

Amino Acids

36.91

Weight (kDa)

9.14

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	133 - 331	5.2e-73	O-methyltransferase
Methyltransf_24	PF13578	177 - 283	3.5e-12	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61990 AT3G62000 AT3G62000
fragaria_vesca	FvH4_3g16510
malus_domestica	MD05G1209400.v1.1
prunus_persica	Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1
pyrus_communis	pycom05g19550
rosa_chinensis	RchiOBHm_Chr5g0027561
rosa_laevigata	RLG00000033026
rosa_multiflora	Rmu_sc0001647.1_g000001 Rmu_sc0011056.1_g000008
rosa_roxburghii	Rroxscaffold_1G00051980
rosa_samantha	Rh5AG193900 Rh5BG191900 Rh5CG212100 Rh5DG193800
rosa_wichuraiana	Rw5G017680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	454
AasI	GACNNNNNNGTC	1 cut(s)	14
Acc16I	TGCGCA	1 cut(s)	195
Acc36I	ACCTGC	1 cut(s)	454
Acc65I	GGTACC	1 cut(s)	958
AccB1I	GGYRCC	1 cut(s)	958
AccB7I	CCANNNNNTGG	1 cut(s)	676
AccII	CGCG	1 cut(s)	370
AciI	CCGC	2 cut(s)	368, 370
AclWI	GGATC	2 cut(s)	69, 866
AcoI	YGGCCR	1 cut(s)	10
AcsI	RAATTY	2 cut(s)	507, 910
AdeI	CACNNNGTG	1 cut(s)	676
AfaI	GTAC	3 cut(s)	174, 399, 960
AfiI	CCNNNNNNNGG	3 cut(s)	231, 590, 676
AflII	CTTAAG	1 cut(s)	709
AgsI	TTSAA	3 cut(s)	533, 797, 916
AhdI	GACNNNNNGTC	1 cut(s)	984
AjiI	CACGTC	1 cut(s)	16
AjnI	CCWGG	2 cut(s)	224, 477
AjuI	GAANNNNNNNTTGG	2 cut(s)	199, 231
AluBI	AGCT	4 cut(s)	132, 161, 605, 744
AluI	AGCT	4 cut(s)	132, 161, 605, 744
Alw26I	GTCTC	2 cut(s)	428, 474
AlwI	GGATC	2 cut(s)	69, 866
AoxI	GGCC	2 cut(s)	10, 149
ApeKI	GCWGC	3 cut(s)	267, 270, 698
ApoI	RAATTY	2 cut(s)	507, 910
Asp718I	GGTACC	1 cut(s)	958
AspLEI	GCGC	1 cut(s)	196
AspS9I	GGNCC	2 cut(s)	44, 577
AsuHPI	GGTGA	1 cut(s)	743
AvaII	GGWCC	2 cut(s)	44, 577
BanI	GGYRCC	1 cut(s)	958
BauI	CACGAG	2 cut(s)	127, 812
BbvI	GCAGC	3 cut(s)	279, 282, 710
BccI	CCATC	3 cut(s)	141, 965, 971
BceAI	ACGGC	1 cut(s)	25
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BciT130I	CCWGG	2 cut(s)	226, 479
BciVI	GTATCC	1 cut(s)	792
BcoDI	GTCTC	2 cut(s)	428, 474
BfrI	CTTAAG	1 cut(s)	709
BfuAI	ACCTGC	1 cut(s)	454
BfuI	GTATCC	1 cut(s)	792
BglII	AGATCT	1 cut(s)	188
BisI	GCNGC	4 cut(s)	268, 271, 371, 699
BlsI	GCNGC	4 cut(s)	269, 272, 372, 700
BmcAI	AGTACT	1 cut(s)	174
Bme1390I	CCNGG	2 cut(s)	226, 479
Bme18I	GGWCC	2 cut(s)	44, 577
BmeRI	GACNNNNNGTC	1 cut(s)	984
BmgBI	CACGTC	1 cut(s)	16
BmgT120I	GGNCC	2 cut(s)	44, 577
BmiI	GGNNCC	1 cut(s)	960
BmrFI	CCNGG	2 cut(s)	226, 479
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	4 cut(s)	450, 607, 754, 877
BmuI	ACTGGG	1 cut(s)	79
BplI	GAGNNNNNCTC	2 cut(s)	425, 457
BpuEI	CTTGAG	1 cut(s)	650
Bsa29I	ATCGAT	1 cut(s)	145
BsaJI	CCNNGG	3 cut(s)	47, 225, 368
Bsc4I	CCNNNNNNNGG	3 cut(s)	231, 590, 676
Bse1I	ACTGG	3 cut(s)	37, 46, 85
Bse3DI	GCAATG	1 cut(s)	501
BseBI	CCWGG	2 cut(s)	226, 479
BseCI	ATCGAT	1 cut(s)	145
BseDI	CCNNGG	3 cut(s)	47, 225, 368
BseGI	GGATG	2 cut(s)	384, 976
BseLI	CCNNNNNNNGG	3 cut(s)	231, 590, 676
BseMI	GCAATG	1 cut(s)	501
BseNI	ACTGG	3 cut(s)	37, 46, 85
BseRI	GAGGAG	1 cut(s)	446
BseXI	GCAGC	3 cut(s)	279, 282, 710
Bsh1236I	CGCG	1 cut(s)	370
BshFI	GGCC	2 cut(s)	12, 151
BshNI	GGYRCC	1 cut(s)	958
BshVI	ATCGAT	1 cut(s)	145
BsiWI	CGTACG	1 cut(s)	397
BslI	CCNNNNNNNGG	3 cut(s)	231, 590, 676
BsmAI	GTCTC	2 cut(s)	428, 474
BsnI	GGCC	2 cut(s)	12, 151
Bsp143I	GATC	4 cut(s)	74, 188, 713, 871
BspACI	CCGC	2 cut(s)	368, 370
BspANI	GGCC	2 cut(s)	12, 151
BspDI	ATCGAT	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	370
BspLI	GGNNCC	1 cut(s)	960
BspMI	ACCTGC	1 cut(s)	454
BspPI	GGATC	2 cut(s)	69, 866
BspT107I	GGYRCC	1 cut(s)	958
BspTI	CTTAAG	1 cut(s)	709
BsrDI	GCAATG	1 cut(s)	501
BsrI	ACTGG	3 cut(s)	37, 46, 85
BssECI	CCNNGG	3 cut(s)	47, 225, 368
BssMI	GATC	4 cut(s)	74, 188, 713, 871
BssSI	CACGAG	2 cut(s)	127, 812
Bst2BI	CACGAG	2 cut(s)	127, 812
Bst2UI	CCWGG	2 cut(s)	226, 479
Bst4CI	ACNGT	2 cut(s)	731, 898
BstAFI	CTTAAG	1 cut(s)	709
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	2 cut(s)	157, 425
BstDSI	CCRYGG	1 cut(s)	368
BstENI	CCTNNNNNAGG	1 cut(s)	229
BstF5I	GGATG	2 cut(s)	384, 976
BstFNI	CGCG	1 cut(s)	370
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	4 cut(s)	77, 191, 716, 874
BstMAI	GTCTC	2 cut(s)	428, 474
BstMBI	GATC	4 cut(s)	74, 188, 713, 871
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 496
BstNI	CCWGG	2 cut(s)	226, 479
BstNSI	RCATGY	1 cut(s)	741
BstSCI	CCNGG	2 cut(s)	224, 477
BstUI	CGCG	1 cut(s)	370
BstV1I	GCAGC	3 cut(s)	279, 282, 710
BstX2I	RGATCY	2 cut(s)	74, 188
BstYI	RGATCY	2 cut(s)	74, 188
Bsu15I	ATCGAT	1 cut(s)	145
BsuI	GTATCC	1 cut(s)	792
BsuRI	GGCC	2 cut(s)	12, 151
BsuTUI	ATCGAT	1 cut(s)	145
BtgI	CCRYGG	1 cut(s)	368
BtrI	CACGTC	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	384, 976
BtsIMutI	CAGTG	2 cut(s)	364, 716
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	492
CfoI	GCGC	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	44, 577
Cfr42I	CCGCGG	1 cut(s)	371
ClaI	ATCGAT	1 cut(s)	145
Csp6I	GTAC	3 cut(s)	173, 398, 959
CviAII	CATG	5 cut(s)	445, 512, 738, 857, 976
CviQI	GTAC	3 cut(s)	173, 398, 959
DdeI	CTNAG	2 cut(s)	157, 425
DpnI	GATC	4 cut(s)	76, 190, 715, 873
DpnII	GATC	4 cut(s)	74, 188, 713, 871
DraIII	CACNNNGTG	1 cut(s)	676
DrdI	GACNNNNNNGTC	1 cut(s)	14
DriI	GACNNNNNGTC	1 cut(s)	984
DseDI	GACNNNNNNGTC	1 cut(s)	14
EaeI	YGGCCR	1 cut(s)	10
Eam1105I	GACNNNNNGTC	1 cut(s)	984
Eco47I	GGWCC	2 cut(s)	44, 577
EcoNI	CCTNNNNNAGG	1 cut(s)	229
EcoRII	CCWGG	2 cut(s)	224, 477
EcoT22I	ATGCAT	1 cut(s)	313
FaeI	CATG	5 cut(s)	448, 515, 741, 860, 979
FatI	CATG	5 cut(s)	444, 511, 737, 856, 975
Fnu4HI	GCNGC	4 cut(s)	268, 271, 371, 699
FokI	GGATG	2 cut(s)	371, 983
Fsp4HI	GCNGC	4 cut(s)	268, 271, 371, 699
FspI	TGCGCA	1 cut(s)	195
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	4 cut(s)	268, 271, 371, 699
HaeIII	GGCC	2 cut(s)	12, 151
HhaI	GCGC	1 cut(s)	196
Hin1II	CATG	5 cut(s)	448, 515, 741, 860, 979
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HinfI	GANTC	2 cut(s)	587, 721
HphI	GGTGA	1 cut(s)	743
Hpy188I	TCNGA	3 cut(s)	48, 260, 726
Hpy188III	TCNNGA	6 cut(s)	473, 584, 629, 785, 814, 875
HpyAV	CCTTC	1 cut(s)	590
HpyCH4III	ACNGT	2 cut(s)	731, 898
HpyCH4IV	ACGT	2 cut(s)	15, 396
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 496
HpyF3I	CTNAG	2 cut(s)	157, 425
HpySE526I	ACGT	2 cut(s)	15, 396
Hsp92II	CATG	5 cut(s)	448, 515, 741, 860, 979
HspAI	GCGC	1 cut(s)	194
KpnI	GGTACC	1 cut(s)	962
KspI	CCGCGG	1 cut(s)	371
Kzo9I	GATC	4 cut(s)	74, 188, 713, 871
LmnI	GCTCC	1 cut(s)	810
Lsp1109I	GCAGC	3 cut(s)	279, 282, 710
LweI	GCATC	4 cut(s)	450, 607, 754, 877
MaeII	ACGT	2 cut(s)	15, 396
MaeIII	GTNAC	2 cut(s)	37, 361
MalI	GATC	4 cut(s)	76, 190, 715, 873
MboI	GATC	4 cut(s)	74, 188, 713, 871
MboII	GAAGA	2 cut(s)	84, 170
MflI	RGATCY	2 cut(s)	74, 188
MluCI	AATT	4 cut(s)	507, 797, 831, 910
MmeI	TCCRAC	1 cut(s)	832
Mph1103I	ATGCAT	1 cut(s)	313
MseI	TTAA	4 cut(s)	278, 710, 926, 997
MslI	CAYNNNNRTG	2 cut(s)	243, 953
MspA1I	CMGCKG	1 cut(s)	370
MspCI	CTTAAG	1 cut(s)	709
MspR9I	CCNGG	2 cut(s)	226, 479
MvaI	CCWGG	2 cut(s)	226, 479
MvnI	CGCG	1 cut(s)	370
MwoI	GCNNNNNNNGC	2 cut(s)	308, 496
NdeII	GATC	4 cut(s)	74, 188, 713, 871
NlaIII	CATG	5 cut(s)	448, 515, 741, 860, 979
NlaIV	GGNNCC	1 cut(s)	960
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	37
NsbI	TGCGCA	1 cut(s)	195
NsiI	ATGCAT	1 cut(s)	313
NspI	RCATGY	1 cut(s)	741
PaqCI	CACCTGC	1 cut(s)	454
PfeI	GAWTC	2 cut(s)	587, 721
Pfl23II	CGTACG	1 cut(s)	397
PflMI	CCANNNNNTGG	1 cut(s)	676
PkrI	GCNGC	4 cut(s)	269, 272, 372, 700
Psp6I	CCWGG	2 cut(s)	224, 477
PspGI	CCWGG	2 cut(s)	224, 477
PspLI	CGTACG	1 cut(s)	397
PspN4I	GGNNCC	1 cut(s)	960
PspPI	GGNCC	2 cut(s)	44, 577
PsuI	RGATCY	2 cut(s)	74, 188
RsaI	GTAC	3 cut(s)	174, 399, 960
RsaNI	GTAC	3 cut(s)	173, 398, 959
RseI	CAYNNNNRTG	2 cut(s)	243, 953
SacII	CCGCGG	1 cut(s)	371
SaqAI	TTAA	4 cut(s)	278, 710, 926, 997
SatI	GCNGC	4 cut(s)	268, 271, 371, 699
Sau3AI	GATC	4 cut(s)	74, 188, 713, 871
Sau96I	GGNCC	2 cut(s)	44, 577
ScaI	AGTACT	1 cut(s)	174
ScrFI	CCNGG	2 cut(s)	226, 479
SfaNI	GCATC	4 cut(s)	450, 607, 754, 877
Sfr303I	CCGCGG	1 cut(s)	371
SgrBI	CCGCGG	1 cut(s)	371
SinI	GGWCC	2 cut(s)	44, 577
SmiMI	CAYNNNNRTG	2 cut(s)	243, 953
SmlI	CTYRAG	2 cut(s)	629, 709
SmoI	CTYRAG	2 cut(s)	629, 709
Sse9I	AATT	4 cut(s)	507, 797, 831, 910
SsiI	CCGC	2 cut(s)	368, 370
StyD4I	CCNGG	2 cut(s)	224, 477
TaaI	ACNGT	2 cut(s)	731, 898
TaiI	ACGT	2 cut(s)	18, 399
TaqI	TCGA	2 cut(s)	145, 988
TasI	AATT	4 cut(s)	507, 797, 831, 910
TatI	WGTACW	1 cut(s)	172
TauI	GCSGC	1 cut(s)	373
TfiI	GAWTC	2 cut(s)	587, 721
Tru1I	TTAA	4 cut(s)	278, 710, 926, 997
Tru9I	TTAA	4 cut(s)	278, 710, 926, 997
TscAI	CASTG	2 cut(s)	364, 723
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	3 cut(s)	267, 270, 698
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	3 cut(s)	131, 500, 546
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	2 cut(s)	364, 723
Van91I	CCANNNNNTGG	1 cut(s)	676
Vha464I	CTTAAG	1 cut(s)	709
VpaK11BI	GGWCC	2 cut(s)	44, 577
XagI	CCTNNNNNAGG	1 cut(s)	229
XapI	RAATTY	2 cut(s)	507, 910
XceI	RCATGY	1 cut(s)	741
ZrmI	AGTACT	1 cut(s)	174
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.