Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004057

Physical Location & Seq

Genomic Coordinates Reverse (-)

22959053 .. 22961321

Gene Structure 2269 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G62000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTCGACCGGTTTAGCTCTGAATCGCTGTTCAGTTTCGGTATGTAGAACGGCCGTTACTTTACTTAACCGGCCAACTGTCTCCGTTGCCAGGAGTTTGAAATTCAGTCGCCGGCTAATCGGAAACTGCTCGATAGCGCCGGCGGATCCTTATGTTGTGGCGGACGACGATAAGTACGGTAACAAACAAGTTATCAGTCTCACTCCTCGCCTTTACGACTATGTCCTCTCCAACGTCCGCGAGCCTAAGATTTTGAGGCAACTTCGGGAAGAGACTTCCAAAATGCGAGGTAGCCAAATGCAGGTGTCGCCTGATCAAGCGCAGTTGCTTGCAATGCTTGTACAGATGCTTGCAGCAGAAAGATGTATTGAAGTTGGAGTTTACACGGGATATTCTTCATTGGCTGTGGCGTTAGTTCTACCAGAATCAGGGTGTTTAGTTGCCTGTGAAAGAGATTCTAACTCTCTTGAAGTTGCTAAGAGGTACTACGAGCTTGCTGGAGTCTCTCACAAGGTTAATGTGAAACAAGGTCTTGCAGCTGAATCATTGAAATCCATGATTCAGAACGGTGAAGGAGCCAGCTATGATTTTGCATTTGTCGATGCTGATAAGAGGATGTATCAGGACTACTTCGAATTGCTTCTTCAACTTGTCAGAGTTGGTGGAGTCATTGTGATGGATAATGTTCTTTGGCATGGACGAGTTTCGGATCCTATGGTGAATGATGCGAAGACCATCAGCATTAGGAATTTCAACAAAAAGTTAATGGATGATAAACGTGTAAGCATTAGTATGGTACCGATCGGCGATGGCATGACGATATGCCGCAAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

278

Amino Acids

30.87

Weight (kDa)

9.01

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	79 - 267	5e-64	O-methyltransferase
Methyltransf_24	PF13578	123 - 229	3.6e-12	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61990 AT3G62000 AT3G62000
fragaria_vesca	FvH4_3g16510
malus_domestica	MD05G1209400.v1.1
prunus_persica	Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1
pyrus_communis	pycom05g19550
rosa_chinensis	RchiOBHm_Chr5g0027561
rosa_laevigata	RLG00000033026
rosa_multiflora	Rmu_sc0001647.1_g000001 Rmu_sc0011056.1_g000008
rosa_roxburghii	Rroxscaffold_1G00051980
rosa_samantha	Rh5AG193900 Rh5BG191900 Rh5CG212100 Rh5DG193800
rosa_wichuraiana	Rw5G017680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	292
Acc36I	ACCTGC	1 cut(s)	292
Acc65I	GGTACC	1 cut(s)	796
AccB1I	GGYRCC	1 cut(s)	796
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	240
AciI	CCGC	4 cut(s)	143, 161, 238, 826
AclWI	GGATC	4 cut(s)	140, 153, 704, 717
AcoI	YGGCCR	2 cut(s)	51, 71
AcsI	RAATTY	2 cut(s)	101, 748
AfaI	GTAC	4 cut(s)	176, 342, 485, 798
AfiI	CCNNNNNNNGG	3 cut(s)	90, 301, 428
AflIII	ACRYGT	1 cut(s)	778
AgeI	ACCGGT	1 cut(s)	8
AgsI	TTSAA	6 cut(s)	100, 371, 470, 550, 647, 754
AjnI	CCWGG	1 cut(s)	89
AluBI	AGCT	4 cut(s)	17, 493, 539, 582
AluI	AGCT	4 cut(s)	17, 493, 539, 582
Alw26I	GTCTC	4 cut(s)	85, 203, 266, 508
AlwI	GGATC	4 cut(s)	140, 153, 704, 717
AoxI	GGCC	2 cut(s)	51, 71
ApeKI	GCWGC	2 cut(s)	353, 536
ApoI	RAATTY	2 cut(s)	101, 748
AsiGI	ACCGGT	1 cut(s)	8
Asp700I	GAANNNNTTC	1 cut(s)	639
Asp718I	GGTACC	1 cut(s)	796
AspLEI	GCGC	2 cut(s)	139, 322
AsuHPI	GGTGA	2 cut(s)	581, 730
AsuII	TTCGAA	1 cut(s)	633
BamHI	GGATCC	2 cut(s)	145, 709
BanI	GGYRCC	1 cut(s)	796
BbsI	GAAGAC	1 cut(s)	737
BbvI	GCAGC	2 cut(s)	365, 548
BccI	CCATC	3 cut(s)	670, 743, 803
BceAI	ACGGC	2 cut(s)	38, 66
BciT130I	CCWGG	1 cut(s)	91
BclI	TGATCA	1 cut(s)	313
BcoDI	GTCTC	4 cut(s)	85, 203, 266, 508
BfoI	RGCGCY	1 cut(s)	140
BfuAI	ACCTGC	1 cut(s)	292
BisI	GCNGC	3 cut(s)	354, 537, 826
BlsI	GCNGC	3 cut(s)	355, 538, 827
Bme1390I	CCNGG	1 cut(s)	91
BmiI	GGNNCC	4 cut(s)	147, 577, 711, 798
BmrFI	CCNGG	1 cut(s)	91
BmsI	GCATC	3 cut(s)	336, 592, 715
BpiI	GAAGAC	1 cut(s)	737
BpmI	CTGGAG	1 cut(s)	519
Bpu14I	TTCGAA	1 cut(s)	633
BsaWI	WCCGGW	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	657, 687
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 301, 428
Bse118I	RCCGGY	4 cut(s)	8, 69, 111, 139
Bse3DI	GCAATG	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	91
BseGI	GGATG	2 cut(s)	621, 775
BseLI	CCNNNNNNNGG	3 cut(s)	90, 301, 428
BseMI	GCAATG	1 cut(s)	339
BseRI	GAGGAG	1 cut(s)	195
BseX3I	CGGCCG	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	365, 548
Bsh1236I	CGCG	1 cut(s)	240
Bsh1285I	CGRYCG	3 cut(s)	9, 54, 804
BshFI	GGCC	2 cut(s)	53, 73
BshNI	GGYRCC	1 cut(s)	796
BshTI	ACCGGT	1 cut(s)	8
BsiEI	CGRYCG	3 cut(s)	9, 54, 804
BsiSI	CCGG	4 cut(s)	9, 70, 112, 140
BslI	CCNNNNNNNGG	3 cut(s)	90, 301, 428
BsmAI	GTCTC	4 cut(s)	85, 203, 266, 508
BsnI	GGCC	2 cut(s)	53, 73
Bsp119I	TTCGAA	1 cut(s)	633
Bsp1407I	TGTACA	1 cut(s)	340
Bsp143I	GATC	4 cut(s)	145, 313, 709, 801
BspACI	CCGC	4 cut(s)	143, 161, 238, 826
BspANI	GGCC	2 cut(s)	53, 73
BspFNI	CGCG	1 cut(s)	240
BspLI	GGNNCC	4 cut(s)	147, 577, 711, 798
BspMI	ACCTGC	1 cut(s)	292
BspPI	GGATC	4 cut(s)	140, 153, 704, 717
BspT104I	TTCGAA	1 cut(s)	633
BspT107I	GGYRCC	1 cut(s)	796
BsrDI	GCAATG	1 cut(s)	339
BsrFI	RCCGGY	4 cut(s)	8, 69, 111, 139
BsrGI	TGTACA	1 cut(s)	340
BssAI	RCCGGY	4 cut(s)	8, 69, 111, 139
BssMI	GATC	4 cut(s)	145, 313, 709, 801
Bst2UI	CCWGG	1 cut(s)	91
Bst4CI	ACNGT	3 cut(s)	79, 179, 569
Bst6I	CTCTTC	1 cut(s)	264
BstAUI	TGTACA	1 cut(s)	340
BstBI	TTCGAA	1 cut(s)	633
BstC8I	GCNNGC	7 cut(s)	113, 141, 242, 330, 351, 495, 580
BstDEI	CTNAG	2 cut(s)	246, 477
BstF5I	GGATG	2 cut(s)	621, 775
BstFNI	CGCG	1 cut(s)	240
BstH2I	RGCGCY	1 cut(s)	140
BstHHI	GCGC	2 cut(s)	139, 322
BstKTI	GATC	4 cut(s)	148, 316, 712, 804
BstMAI	GTCTC	4 cut(s)	85, 203, 266, 508
BstMBI	GATC	4 cut(s)	145, 313, 709, 801
BstMCI	CGRYCG	3 cut(s)	9, 54, 804
BstMWI	GCNNNNNNNGC	2 cut(s)	307, 334
BstNI	CCWGG	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	89
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	2 cut(s)	365, 548
BstV2I	GAAGAC	1 cut(s)	737
BstX2I	RGATCY	2 cut(s)	145, 709
BstYI	RGATCY	2 cut(s)	145, 709
BstZI	CGGCCG	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	53, 73
BtgZI	GCGATG	1 cut(s)	822
BtsCI	GGATG	2 cut(s)	621, 775
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	7 cut(s)	113, 141, 242, 330, 351, 495, 580
CfoI	GCGC	2 cut(s)	139, 322
Cfr10I	RCCGGY	4 cut(s)	8, 69, 111, 139
Csp6I	GTAC	4 cut(s)	175, 341, 484, 797
CspAI	ACCGGT	1 cut(s)	8
CviAII	CATG	3 cut(s)	556, 695, 814
CviQI	GTAC	4 cut(s)	175, 341, 484, 797
DdeI	CTNAG	2 cut(s)	246, 477
DpnI	GATC	4 cut(s)	147, 315, 711, 803
DpnII	GATC	4 cut(s)	145, 313, 709, 801
EaeI	YGGCCR	2 cut(s)	51, 71
EagI	CGGCCG	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
EciI	GGCGGA	2 cut(s)	158, 176
EclXI	CGGCCG	1 cut(s)	51
Eco52I	CGGCCG	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	89
FaeI	CATG	3 cut(s)	559, 698, 817
FatI	CATG	3 cut(s)	555, 694, 813
FbaI	TGATCA	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	354, 537, 826
FokI	GGATG	2 cut(s)	628, 782
Fsp4HI	GCNGC	3 cut(s)	354, 537, 826
GlaI	GCGC	2 cut(s)	138, 321
GluI	GCNGC	3 cut(s)	354, 537, 826
GsuI	CTGGAG	1 cut(s)	519
HaeII	RGCGCY	1 cut(s)	140
HaeIII	GGCC	2 cut(s)	53, 73
HapII	CCGG	4 cut(s)	9, 70, 112, 140
HhaI	GCGC	2 cut(s)	139, 322
Hin1II	CATG	3 cut(s)	559, 698, 817
Hin6I	GCGC	2 cut(s)	137, 320
HinP1I	GCGC	2 cut(s)	137, 320
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	7 cut(s)	22, 425, 455, 501, 542, 559, 666
HpaII	CCGG	4 cut(s)	9, 70, 112, 140
HphI	GGTGA	2 cut(s)	581, 730
Hpy166II	GTNNAC	2 cut(s)	6, 382
Hpy188I	TCNGA	5 cut(s)	21, 122, 564, 656, 709
Hpy188III	TCNNGA	3 cut(s)	266, 467, 623
Hpy8I	GTNNAC	2 cut(s)	6, 382
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	566
HpyCH4III	ACNGT	3 cut(s)	79, 179, 569
HpyCH4IV	ACGT	2 cut(s)	234, 778
HpyCH4V	TGCA	5 cut(s)	301, 332, 353, 536, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	307, 334
HpyF3I	CTNAG	2 cut(s)	246, 477
HpySE526I	ACGT	2 cut(s)	234, 778
Hsp92II	CATG	3 cut(s)	559, 698, 817
HspAI	GCGC	2 cut(s)	137, 320
KpnI	GGTACC	1 cut(s)	800
KroI	GCCGGC	2 cut(s)	111, 139
KroNI	GCCGGC	2 cut(s)	113, 141
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	4 cut(s)	145, 313, 709, 801
LmnI	GCTCC	1 cut(s)	575
Lsp1109I	GCAGC	2 cut(s)	365, 548
LweI	GCATC	3 cut(s)	336, 592, 715
MaeII	ACGT	2 cut(s)	234, 778
MaeIII	GTNAC	2 cut(s)	55, 179
MalI	GATC	4 cut(s)	147, 315, 711, 803
MboI	GATC	4 cut(s)	145, 313, 709, 801
MboII	GAAGA	4 cut(s)	281, 387, 635, 742
MflI	RGATCY	2 cut(s)	145, 709
MluCI	AATT	3 cut(s)	101, 635, 748
MlyI	GAGTC	2 cut(s)	510, 675
MmeI	TCCRAC	2 cut(s)	255, 355
MnlI	CCTC	6 cut(s)	216, 236, 249, 281, 474, 606
MreI	CGCCGGCG	1 cut(s)	139
MroNI	GCCGGC	2 cut(s)	111, 139
MroXI	GAANNNNTTC	1 cut(s)	639
MseI	TTAA	3 cut(s)	66, 516, 764
MslI	CAYNNNNRTG	2 cut(s)	674, 791
MspA1I	CMGCKG	1 cut(s)	539
MspI	CCGG	4 cut(s)	9, 70, 112, 140
MspR9I	CCNGG	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	91
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	2 cut(s)	307, 334
NaeI	GCCGGC	2 cut(s)	113, 141
NdeII	GATC	4 cut(s)	145, 313, 709, 801
NgoMIV	GCCGGC	2 cut(s)	111, 139
NlaIII	CATG	3 cut(s)	559, 698, 817
NlaIV	GGNNCC	4 cut(s)	147, 577, 711, 798
NspV	TTCGAA	1 cut(s)	633
PaqCI	CACCTGC	1 cut(s)	292
PdiI	GCCGGC	2 cut(s)	113, 141
PdmI	GAANNNNTTC	1 cut(s)	639
PfeI	GAWTC	5 cut(s)	22, 425, 455, 542, 559
PflFI	GACNNNGTC	1 cut(s)	221
PinAI	ACCGGT	1 cut(s)	8
PkrI	GCNGC	3 cut(s)	355, 538, 827
Ple19I	CGATCG	1 cut(s)	804
PleI	GAGTC	2 cut(s)	509, 674
PpsI	GAGTC	2 cut(s)	509, 674
Psp6I	CCWGG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	89
PspN4I	GGNNCC	4 cut(s)	147, 577, 711, 798
PsrI	GAACNNNNNNTAC	2 cut(s)	40, 72
PsuI	RGATCY	2 cut(s)	145, 709
PsyI	GACNNNGTC	1 cut(s)	221
PvuI	CGATCG	1 cut(s)	804
PvuII	CAGCTG	1 cut(s)	539
RsaI	GTAC	4 cut(s)	176, 342, 485, 798
RsaNI	GTAC	4 cut(s)	175, 341, 484, 797
RseI	CAYNNNNRTG	2 cut(s)	674, 791
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	3 cut(s)	66, 516, 764
SatI	GCNGC	3 cut(s)	354, 537, 826
Sau3AI	GATC	4 cut(s)	145, 313, 709, 801
SchI	GAGTC	2 cut(s)	510, 675
ScrFI	CCNGG	1 cut(s)	91
SfaNI	GCATC	3 cut(s)	336, 592, 715
SfuI	TTCGAA	1 cut(s)	633
SgrAI	CRCCGGYG	1 cut(s)	139
SmiMI	CAYNNNNRTG	2 cut(s)	674, 791
Sse9I	AATT	3 cut(s)	101, 635, 748
SsiI	CCGC	4 cut(s)	143, 161, 238, 826
StyD4I	CCNGG	1 cut(s)	89
TaaI	ACNGT	3 cut(s)	79, 179, 569
TaiI	ACGT	2 cut(s)	237, 781
TaqI	TCGA	4 cut(s)	5, 131, 600, 633
TasI	AATT	3 cut(s)	101, 635, 748
TatI	WGTACW	1 cut(s)	340
TauI	GCSGC	1 cut(s)	828
TfiI	GAWTC	5 cut(s)	22, 425, 455, 542, 559
Tru1I	TTAA	3 cut(s)	66, 516, 764
Tru9I	TTAA	3 cut(s)	66, 516, 764
TseI	GCWGC	2 cut(s)	353, 536
TspDTI	ATGAA	1 cut(s)	387
TspGWI	ACGGA	1 cut(s)	73
Tth111I	GACNNNGTC	1 cut(s)	221
XapI	RAATTY	2 cut(s)	101, 748
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.