Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004057

Physical Location & Seq

Genomic Coordinates Forward (+)

22456222 .. 22457623

Gene Structure 1402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g19550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGGGAGCAGCAACAGCTTGGGGATTCATTCTTGGTCTATCTTAGCGCCTCAGCGGGTAATTCTTCAGCAAAAATCCATACCAAAGTCCCATTCTTTGTCCCCAACTGTCACCGTTTCTAGCATTGCCACCAACAAGACCTGCTCCGAGAGGTACCCAATACCAAGAGGTTGCTTGGGATTCATTGCATTCACCAGAAAGGTAAATAAGACCATAAGAGGATGTGCTGCCAGCCCATTTGTTGTTGCCAATGATGAAAAGTATGGAAACAAGCAGATTATCAGTATTACTCCACGCCTTTACGACTACATCCTTGCCAATGTTCGAGAGCCAGAGGTTCTACAACAACTTAGGGAGGAGACTGCCTCTATGCGTGGTAGTCAGATGCAGGTGTCTCCTGATCAGGCTCAACTGCTTGCAATGCTTGTGCAGATTCATGGGGCTGAAAAGTGTATTGAAGTTGGCGTTTATACCGTATTCATCATTGGCTATTGCACTGGCTCTTCCAGAATCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

173

Amino Acids

18.99

Weight (kDa)

9.35

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	108 - 160	6.8e-13	O-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61990 AT3G62000 AT3G62000
fragaria_vesca	FvH4_3g16510
malus_domestica	MD05G1209400.v1.1
prunus_persica	Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1
pyrus_communis	pycom05g19550
rosa_chinensis	RchiOBHm_Chr5g0027561
rosa_laevigata	RLG00000033026
rosa_multiflora	Rmu_sc0001647.1_g000001 Rmu_sc0011056.1_g000008
rosa_roxburghii	Rroxscaffold_1G00051980
rosa_samantha	Rh5AG193900 Rh5BG191900 Rh5CG212100 Rh5DG193800
rosa_wichuraiana	Rw5G017680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	379
Acc36I	ACCTGC	2 cut(s)	149, 379
Acc65I	GGTACC	1 cut(s)	153
AccB1I	GGYRCC	1 cut(s)	153
AccB7I	CCANNNNNTGG	1 cut(s)	513
AciI	CCGC	1 cut(s)	55
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	513
AgsI	TTSAA	1 cut(s)	458
AjuI	GAANNNNNNNTTGG	2 cut(s)	76, 108
AluBI	AGCT	1 cut(s)	18
AluI	AGCT	1 cut(s)	18
Alw26I	GTCTC	2 cut(s)	353, 399
AlwNI	CAGNNNCTG	1 cut(s)	513
ApeKI	GCWGC	2 cut(s)	9, 227
Asp718I	GGTACC	1 cut(s)	153
AspLEI	GCGC	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	103, 184
BanI	GGYRCC	1 cut(s)	153
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	21, 214
BclI	TGATCA	1 cut(s)	400
BcoDI	GTCTC	2 cut(s)	353, 399
BfaI	CTAG	1 cut(s)	120
BfoI	RGCGCY	1 cut(s)	50
BfuAI	ACCTGC	2 cut(s)	149, 379
BisI	GCNGC	2 cut(s)	10, 228
BlsI	GCNGC	2 cut(s)	11, 229
BmiI	GGNNCC	1 cut(s)	155
BmsI	GCATC	1 cut(s)	375
BplI	GAGNNNNNCTC	2 cut(s)	350, 382
Bpu10I	CCTNAGC	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	513
Bse1I	ACTGG	1 cut(s)	502
Bse3DI	GCAATG	3 cut(s)	123, 183, 426
BseGI	GGATG	2 cut(s)	227, 309
BseLI	CCNNNNNNNGG	1 cut(s)	513
BseMI	GCAATG	3 cut(s)	123, 183, 426
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	502
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	2 cut(s)	21, 214
BsgI	GTGCAG	1 cut(s)	449
BshNI	GGYRCC	1 cut(s)	153
BslFI	GGGAC	2 cut(s)	73, 85
BslI	CCNNNNNNNGG	1 cut(s)	513
BsmAI	GTCTC	2 cut(s)	353, 399
BsmFI	GGGAC	2 cut(s)	73, 85
BsmI	GAATGC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	400
BspACI	CCGC	1 cut(s)	55
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	155
BspMI	ACCTGC	2 cut(s)	149, 379
BspQI	GCTCTTC	1 cut(s)	508
BspT107I	GGYRCC	1 cut(s)	153
BsrDI	GCAATG	3 cut(s)	123, 183, 426
BsrI	ACTGG	1 cut(s)	502
BssMI	GATC	1 cut(s)	400
Bst4CI	ACNGT	3 cut(s)	109, 115, 475
Bst6I	CTCTTC	1 cut(s)	508
BstC8I	GCNNGC	2 cut(s)	232, 417
BstDEI	CTNAG	3 cut(s)	43, 51, 350
BstF5I	GGATG	2 cut(s)	227, 309
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	1 cut(s)	403
BstMAI	GTCTC	2 cut(s)	353, 399
BstMBI	GATC	1 cut(s)	400
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 421
BstV1I	GCAGC	2 cut(s)	21, 214
BtsCI	GGATG	2 cut(s)	227, 309
BtsIMutI	CAGTG	1 cut(s)	495
BveI	ACCTGC	2 cut(s)	149, 379
Cac8I	GCNNGC	2 cut(s)	232, 417
CaiI	CAGNNNCTG	1 cut(s)	513
CfoI	GCGC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	1 cut(s)	437
CviJI	RGCY	7 cut(s)	18, 234, 331, 407, 443, 489, 501
CviKI_1	RGCY	7 cut(s)	18, 234, 331, 407, 443, 489, 501
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	3 cut(s)	43, 51, 350
DpnI	GATC	1 cut(s)	402
DpnII	GATC	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	508
EarI	CTCTTC	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	50
FaeI	CATG	1 cut(s)	440
FaiI	YATR	6 cut(s)	80, 215, 264, 371, 438, 471
FaqI	GGGAC	2 cut(s)	73, 85
FatI	CATG	1 cut(s)	436
FauI	CCCGC	1 cut(s)	48
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	2 cut(s)	10, 228
FokI	GGATG	2 cut(s)	234, 296
Fsp4HI	GCNGC	2 cut(s)	10, 228
FspBI	CTAG	1 cut(s)	120
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	2 cut(s)	10, 228
HaeII	RGCGCY	1 cut(s)	50
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	1 cut(s)	440
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HinfI	GANTC	4 cut(s)	25, 180, 433, 510
HphI	GGTGA	2 cut(s)	103, 184
Hpy188I	TCNGA	2 cut(s)	148, 384
Hpy188III	TCNNGA	3 cut(s)	326, 398, 507
HpyCH4III	ACNGT	3 cut(s)	109, 115, 475
HpyCH4V	TGCA	5 cut(s)	188, 388, 419, 430, 495
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 421
HpyF3I	CTNAG	3 cut(s)	43, 51, 350
Hsp92II	CATG	1 cut(s)	440
HspAI	GCGC	1 cut(s)	47
KpnI	GGTACC	1 cut(s)	157
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	1 cut(s)	400
LguI	GCTCTTC	1 cut(s)	508
LmnI	GCTCC	2 cut(s)	6, 149
LpnPI	CCDG	9 cut(s)	154, 208, 244, 345, 374, 389, 411, 483, 499
Lsp1109I	GCAGC	2 cut(s)	21, 214
LweI	GCATC	1 cut(s)	375
MaeI	CTAG	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	1 cut(s)	402
MboI	GATC	1 cut(s)	400
MboII	GAAGA	2 cut(s)	56, 495
MluCI	AATT	1 cut(s)	60
MnlI	CCTC	7 cut(s)	60, 144, 161, 212, 328, 349, 376
MspA1I	CMGCKG	1 cut(s)	55
Mva1269I	GAATGC	1 cut(s)	188
MwoI	GCNNNNNNNGC	2 cut(s)	15, 421
NdeII	GATC	1 cut(s)	400
NlaIII	CATG	1 cut(s)	440
NlaIV	GGNNCC	1 cut(s)	155
NmuCI	GTSAC	1 cut(s)	109
PaqCI	CACCTGC	1 cut(s)	379
PciSI	GCTCTTC	1 cut(s)	508
PctI	GAATGC	1 cut(s)	188
PfeI	GAWTC	4 cut(s)	25, 180, 433, 510
PflMI	CCANNNNNTGG	1 cut(s)	513
PkrI	GCNGC	2 cut(s)	11, 229
PspN4I	GGNNCC	1 cut(s)	155
PstNI	CAGNNNCTG	1 cut(s)	513
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SapI	GCTCTTC	1 cut(s)	508
SatI	GCNGC	2 cut(s)	10, 228
Sau3AI	GATC	1 cut(s)	400
SetI	ASST	7 cut(s)	20, 143, 155, 172, 204, 339, 393
SfaNI	GCATC	1 cut(s)	375
Sse9I	AATT	1 cut(s)	60
SsiI	CCGC	1 cut(s)	55
SspMI	CTAG	1 cut(s)	120
TaaI	ACNGT	3 cut(s)	109, 115, 475
TaqI	TCGA	1 cut(s)	325
TasI	AATT	1 cut(s)	60
TfiI	GAWTC	4 cut(s)	25, 180, 433, 510
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	2 cut(s)	9, 227
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	5 cut(s)	17, 172, 270, 425, 469
TspRI	CASTG	1 cut(s)	502
Van91I	CCANNNNNTGG	1 cut(s)	513
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.