Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001647.1

Orthogroup ID

OG0004057

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2949

Gene Structure 2949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001647.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atggggagcaccagcttggggcttcatcggtggcctatcttagctcgtcagcgagtacttattccgcaaagatctgtgcaactacaaccgaagttttattctttttcctgggagaggtgtcatagaggtggcattggcttcagggcttgcagcagtaagttaaagaagagcattagaggttgtgccaccaatgcatttgttgttgctgatgataaaaagtatgggaacaagcagattatcagtattactccgcggctttatgattacatccttgccaatgtacgagagccagaggttctacgacaacttagggaggagactgcctccatgcgtggtagtatgatgcaggtgtctcctgaccaggcacagctgcttgcaatgcttgtgcagattcatggggcagaaaagtgtattgaagttggttctgccgttctgctctgccacattgtatttatggggagcaccagcttggggcttcatcggtggcctatcttagctcgtcagcgagtacttcttccgcaaagatctgcgcaactacgaccgaagttttattctttgtcctgggagaggtgtcatagaggtggcattggcttcagggcttgcagcagtaagttaaagaagagcattagaggttgtgccaccaatgcatttgttgttgctgatgataaaaagtatgggaacaagcagattatcagtattactccgcggctttatgattacatccttgccaatgtacgagagccagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

249

Amino Acids

28.22

Weight (kDa)

10.13

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61990 AT3G62000 AT3G62000
fragaria_vesca	FvH4_3g16510
malus_domestica	MD05G1209400.v1.1
prunus_persica	Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1
pyrus_communis	pycom05g19550
rosa_chinensis	RchiOBHm_Chr5g0027561
rosa_laevigata	RLG00000033026
rosa_multiflora	Rmu_sc0001647.1_g000001 Rmu_sc0011056.1_g000008
rosa_roxburghii	Rroxscaffold_1G00051980
rosa_samantha	Rh5AG193900 Rh5BG191900 Rh5CG212100 Rh5DG193800
rosa_wichuraiana	Rw5G017680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	337
Acc16I	TGCGCA	1 cut(s)	531
Acc36I	ACCTGC	1 cut(s)	337
AccII	CGCG	2 cut(s)	253, 706
AciI	CCGC	6 cut(s)	65, 251, 253, 518, 704, 706
AcuI	CTGAAG	2 cut(s)	124, 577
AfaI	GTAC	4 cut(s)	57, 282, 510, 735
AfiI	CCNNNNNNNGG	4 cut(s)	18, 114, 471, 567
AgsI	TTSAA	1 cut(s)	416
AjnI	CCWGG	3 cut(s)	107, 360, 560
AluBI	AGCT	5 cut(s)	15, 44, 370, 468, 497
AluI	AGCT	5 cut(s)	15, 44, 370, 468, 497
Alw21I	GWGCWC	2 cut(s)	11, 464
Alw26I	GTCTC	2 cut(s)	311, 357
AoxI	GGCC	2 cut(s)	32, 485
ApeKI	GCWGC	3 cut(s)	150, 370, 603
AspLEI	GCGC	1 cut(s)	532
Bbv12I	GWGCWC	2 cut(s)	11, 464
BbvI	GCAGC	3 cut(s)	162, 357, 615
BceAI	ACGGC	1 cut(s)	413
BciT130I	CCWGG	3 cut(s)	109, 362, 562
BcoDI	GTCTC	2 cut(s)	311, 357
BfuAI	ACCTGC	1 cut(s)	337
BglII	AGATCT	2 cut(s)	71, 524
BisI	GCNGC	5 cut(s)	151, 254, 371, 604, 707
BlsI	GCNGC	5 cut(s)	152, 255, 372, 605, 708
BmcAI	AGTACT	2 cut(s)	57, 510
Bme1390I	CCNGG	3 cut(s)	109, 362, 562
BmrFI	CCNGG	3 cut(s)	109, 362, 562
BmsI	GCATC	1 cut(s)	333
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
BsaJI	CCNNGG	4 cut(s)	108, 251, 561, 704
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 114, 471, 567
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	3 cut(s)	109, 362, 562
BseDI	CCNNGG	4 cut(s)	108, 251, 561, 704
BseGI	GGATG	2 cut(s)	267, 720
BseLI	CCNNNNNNNGG	4 cut(s)	18, 114, 471, 567
BseMI	GCAATG	1 cut(s)	384
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	3 cut(s)	162, 357, 615
BsgI	GTGCAG	1 cut(s)	407
Bsh1236I	CGCG	2 cut(s)	253, 706
Bsh1285I	CGRYCG	1 cut(s)	542
BshFI	GGCC	2 cut(s)	34, 487
BsiEI	CGRYCG	1 cut(s)	542
BsiHKAI	GWGCWC	2 cut(s)	11, 464
BslI	CCNNNNNNNGG	4 cut(s)	18, 114, 471, 567
BsmAI	GTCTC	2 cut(s)	311, 357
BsnI	GGCC	2 cut(s)	34, 487
Bsp1286I	GDGCHC	2 cut(s)	11, 464
Bsp143I	GATC	2 cut(s)	71, 524
BspACI	CCGC	6 cut(s)	65, 251, 253, 518, 704, 706
BspANI	GGCC	2 cut(s)	34, 487
BspFNI	CGCG	2 cut(s)	253, 706
BspMI	ACCTGC	1 cut(s)	337
BspQI	GCTCTTC	2 cut(s)	161, 614
BsrDI	GCAATG	1 cut(s)	384
BssECI	CCNNGG	4 cut(s)	108, 251, 561, 704
BssMI	GATC	2 cut(s)	71, 524
Bst2UI	CCWGG	3 cut(s)	109, 362, 562
Bst6I	CTCTTC	2 cut(s)	161, 614
BstC8I	GCNNGC	3 cut(s)	148, 375, 601
BstDEI	CTNAG	3 cut(s)	40, 308, 493
BstDSI	CCRYGG	2 cut(s)	251, 704
BstENI	CCTNNNNNAGG	2 cut(s)	112, 565
BstF5I	GGATG	2 cut(s)	267, 720
BstFNI	CGCG	2 cut(s)	253, 706
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	2 cut(s)	74, 527
BstMAI	GTCTC	2 cut(s)	311, 357
BstMBI	GATC	2 cut(s)	71, 524
BstMCI	CGRYCG	1 cut(s)	542
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 379, 644
BstNI	CCWGG	3 cut(s)	109, 362, 562
BstSCI	CCNGG	3 cut(s)	107, 360, 560
BstUI	CGCG	2 cut(s)	253, 706
BstV1I	GCAGC	3 cut(s)	162, 357, 615
BstX2I	RGATCY	2 cut(s)	71, 524
BstYI	RGATCY	2 cut(s)	71, 524
BsuRI	GGCC	2 cut(s)	34, 487
BtgI	CCRYGG	2 cut(s)	251, 704
BtsCI	GGATG	2 cut(s)	267, 720
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	3 cut(s)	148, 375, 601
CfoI	GCGC	1 cut(s)	532
Cfr42I	CCGCGG	2 cut(s)	254, 707
Csp6I	GTAC	4 cut(s)	56, 281, 509, 734
CviAII	CATG	2 cut(s)	328, 395
CviQI	GTAC	4 cut(s)	56, 281, 509, 734
DdeI	CTNAG	3 cut(s)	40, 308, 493
DpnI	GATC	2 cut(s)	73, 526
DpnII	GATC	2 cut(s)	71, 524
Eam1104I	CTCTTC	2 cut(s)	161, 614
EarI	CTCTTC	2 cut(s)	161, 614
Eco57I	CTGAAG	2 cut(s)	124, 577
EcoNI	CCTNNNNNAGG	2 cut(s)	112, 565
EcoRII	CCWGG	3 cut(s)	107, 360, 560
EcoT22I	ATGCAT	2 cut(s)	196, 649
FaeI	CATG	2 cut(s)	331, 398
FatI	CATG	2 cut(s)	327, 394
Fnu4HI	GCNGC	5 cut(s)	151, 254, 371, 604, 707
FokI	GGATG	2 cut(s)	254, 707
Fsp4HI	GCNGC	5 cut(s)	151, 254, 371, 604, 707
FspI	TGCGCA	1 cut(s)	531
GlaI	GCGC	1 cut(s)	531
GluI	GCNGC	5 cut(s)	151, 254, 371, 604, 707
HaeIII	GGCC	2 cut(s)	34, 487
HhaI	GCGC	1 cut(s)	532
Hin1II	CATG	2 cut(s)	331, 398
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HinfI	GANTC	1 cut(s)	391
Hpy188III	TCNNGA	1 cut(s)	356
HpyCH4V	TGCA	8 cut(s)	79, 150, 194, 346, 377, 388, 603, 647
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 379, 644
HpyF3I	CTNAG	3 cut(s)	40, 308, 493
Hsp92II	CATG	2 cut(s)	331, 398
HspAI	GCGC	1 cut(s)	530
KspI	CCGCGG	2 cut(s)	254, 707
Kzo9I	GATC	2 cut(s)	71, 524
LguI	GCTCTTC	2 cut(s)	161, 614
LmnI	GCTCC	2 cut(s)	6, 459
Lsp1109I	GCAGC	3 cut(s)	162, 357, 615
LweI	GCATC	1 cut(s)	333
MalI	GATC	2 cut(s)	73, 526
MboI	GATC	2 cut(s)	71, 524
MboII	GAAGA	3 cut(s)	178, 506, 631
MflI	RGATCY	2 cut(s)	71, 524
MhlI	GDGCHC	2 cut(s)	11, 464
MnlI	CCTC	9 cut(s)	108, 119, 170, 286, 307, 334, 561, 572, 623
Mph1103I	ATGCAT	2 cut(s)	196, 649
MseI	TTAA	2 cut(s)	161, 614
MslI	CAYNNNNRTG	2 cut(s)	126, 579
MspA1I	CMGCKG	3 cut(s)	253, 370, 706
MspR9I	CCNGG	3 cut(s)	109, 362, 562
MvaI	CCWGG	3 cut(s)	109, 362, 562
MvnI	CGCG	2 cut(s)	253, 706
MwoI	GCNNNNNNNGC	3 cut(s)	191, 379, 644
NdeII	GATC	2 cut(s)	71, 524
NlaIII	CATG	2 cut(s)	331, 398
NsbI	TGCGCA	1 cut(s)	531
NsiI	ATGCAT	2 cut(s)	196, 649
PaqCI	CACCTGC	1 cut(s)	337
PciSI	GCTCTTC	2 cut(s)	161, 614
PfeI	GAWTC	1 cut(s)	391
PkrI	GCNGC	5 cut(s)	152, 255, 372, 605, 708
Psp6I	CCWGG	3 cut(s)	107, 360, 560
PspGI	CCWGG	3 cut(s)	107, 360, 560
PsuI	RGATCY	2 cut(s)	71, 524
PvuII	CAGCTG	1 cut(s)	370
RsaI	GTAC	4 cut(s)	57, 282, 510, 735
RsaNI	GTAC	4 cut(s)	56, 281, 509, 734
RseI	CAYNNNNRTG	2 cut(s)	126, 579
SacII	CCGCGG	2 cut(s)	254, 707
SapI	GCTCTTC	2 cut(s)	161, 614
SaqAI	TTAA	2 cut(s)	161, 614
SatI	GCNGC	5 cut(s)	151, 254, 371, 604, 707
Sau3AI	GATC	2 cut(s)	71, 524
ScaI	AGTACT	2 cut(s)	57, 510
ScrFI	CCNGG	3 cut(s)	109, 362, 562
SduI	GDGCHC	2 cut(s)	11, 464
SfaNI	GCATC	1 cut(s)	333
Sfr303I	CCGCGG	2 cut(s)	254, 707
SgrBI	CCGCGG	2 cut(s)	254, 707
SmiMI	CAYNNNNRTG	2 cut(s)	126, 579
SsiI	CCGC	6 cut(s)	65, 251, 253, 518, 704, 706
StyD4I	CCNGG	3 cut(s)	107, 360, 560
TaqII	GACCGA	1 cut(s)	556
TatI	WGTACW	2 cut(s)	55, 508
TauI	GCSGC	2 cut(s)	256, 709
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	2 cut(s)	161, 614
Tru9I	TTAA	2 cut(s)	161, 614
TseI	GCWGC	3 cut(s)	150, 370, 603
TspDTI	ATGAA	3 cut(s)	14, 383, 467
XagI	CCTNNNNNAGG	2 cut(s)	112, 565
ZrmI	AGTACT	2 cut(s)	57, 510
Zsp2I	ATGCAT	2 cut(s)	196, 649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.