Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004057

Physical Location & Seq

Genomic Coordinates Forward (+)

72750580 .. 72754487

Gene Structure 3908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00051980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGGGAGCACAAGCTTGGGGCTTCATCGGTGGCCTATCTTAGCTCGTCAGCGAGTACTTCTTCCGCTAAGATCTGCACAACTACAACCAAAGTTTTATTCTTTGTCCTGGGAGAGGTGTCATAGAGGTGGCATTGGCTTCGGGGCTTGCAGCAGTAAGTGTAAGAAGAGCATTAGAGGTTGTGCCACCAATGCATTTGTCGTTGCTGATGATAAAAAGTATGGGAACAAGCAGATTATCAGTATTACTCCACGGCTTTACGATTACATCCTTGCCAATGTACGAGAGCCAGAGGTTCTACGACAACTTAGGGAGGAGACTGCCTCCATGCGTGGTAGTATGATGCAGGTGTCTCCTGACCAGGCACAACTACTTGCAATGCTGGTGCAAATTCATGGGGCAGAAAAGTGTATTGAAGTTGGTGTATATACAGGTTATTCATCATTGGCTATTGCATTGGTCCTTCCAGAATCAGGTAGGTTAGTAGCTTGTGAAAGAGATGCCAGAAGTCTTGAGGTTGCAAAAAAGTATTACGAAAAGCCAATGTTTCCCACAAGCTATGATTTTGCATTTATTGATGCTGACAAGAGAATGTATCCAGAATACTTTGAATTGTTGCTCCAACTCGTGAGGGTTGGGGGTCTAATTGTGTTTGATAATGTCCTCTGGCATGGAAAAGTTGCTGATCCAGAGGTGAAACCAGTAACCAGGGTAAATGATGCCAAGACTGTCAGCATTAGAAATTTCAATGCTGATTTAATGGAGGACAAGCGTGTAAGCATTAGTATGACCGCTGGGAGCGTCCTGATCAGTAATCACTGCTCCTCCCTCGAAATTCCTTTACGTACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

284

Amino Acids

31.82

Weight (kDa)

9.11

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	94 - 180	2.2e-26	O-methyltransferase
Methyltransf_3	PF01596	185 - 264	3.2e-23	O-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61990 AT3G62000 AT3G62000
fragaria_vesca	FvH4_3g16510
malus_domestica	MD05G1209400.v1.1
prunus_persica	Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1
pyrus_communis	pycom05g19550
rosa_chinensis	RchiOBHm_Chr5g0027561
rosa_laevigata	RLG00000033026
rosa_multiflora	Rmu_sc0001647.1_g000001 Rmu_sc0011056.1_g000008
rosa_roxburghii	Rroxscaffold_1G00051980
rosa_samantha	Rh5AG193900 Rh5BG191900 Rh5CG212100 Rh5DG193800
rosa_wichuraiana	Rw5G017680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	337
Acc36I	ACCTGC	1 cut(s)	337
AciI	CCGC	2 cut(s)	65, 792
AclWI	GGATC	1 cut(s)	680
AcsI	RAATTY	3 cut(s)	390, 742, 834
AfaI	GTAC	3 cut(s)	57, 282, 847
AfiI	CCNNNNNNNGG	2 cut(s)	114, 473
AgsI	TTSAA	3 cut(s)	416, 611, 748
AjnI	CCWGG	3 cut(s)	107, 360, 707
AjuI	GAANNNNNNNTTGG	2 cut(s)	82, 114
AluBI	AGCT	4 cut(s)	15, 44, 488, 558
AluI	AGCT	4 cut(s)	15, 44, 488, 558
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	2 cut(s)	311, 357
AlwI	GGATC	1 cut(s)	680
AoxI	GGCC	1 cut(s)	32
ApeKI	GCWGC	1 cut(s)	150
ApoI	RAATTY	3 cut(s)	390, 742, 834
AspS9I	GGNCC	1 cut(s)	460
AsuHPI	GGTGA	1 cut(s)	706
AvaII	GGWCC	1 cut(s)	460
BauI	CACGAG	1 cut(s)	626
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	162
BceAI	ACGGC	1 cut(s)	269
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BciT130I	CCWGG	3 cut(s)	109, 362, 709
BciVI	GTATCC	1 cut(s)	606
BclI	TGATCA	1 cut(s)	807
BcoDI	GTCTC	2 cut(s)	311, 357
BfuAI	ACCTGC	1 cut(s)	337
BfuI	GTATCC	1 cut(s)	606
BglII	AGATCT	1 cut(s)	71
BisI	GCNGC	1 cut(s)	151
BlsI	GCNGC	1 cut(s)	152
BmcAI	AGTACT	1 cut(s)	57
Bme1390I	CCNGG	3 cut(s)	109, 362, 709
Bme18I	GGWCC	1 cut(s)	460
BmgT120I	GGNCC	1 cut(s)	460
BmrFI	CCNGG	3 cut(s)	109, 362, 709
BmsI	GCATC	4 cut(s)	333, 490, 568, 709
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
BpuEI	CTTGAG	1 cut(s)	533
BsaAI	YACGTR	1 cut(s)	845
BsaJI	CCNNGG	3 cut(s)	108, 251, 708
BsaXI	ACNNNNNCTCC	2 cut(s)	809, 839
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 473
Bse1I	ACTGG	1 cut(s)	701
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	3 cut(s)	109, 362, 709
BseDI	CCNNGG	3 cut(s)	108, 251, 708
BseGI	GGATG	1 cut(s)	267
BseLI	CCNNNNNNNGG	2 cut(s)	114, 473
BseMI	GCAATG	1 cut(s)	384
BseNI	ACTGG	1 cut(s)	701
BseRI	GAGGAG	2 cut(s)	329, 814
BseXI	GCAGC	1 cut(s)	162
BseYI	CCCAGC	1 cut(s)	794
BsgI	GTGCAG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	11
BslI	CCNNNNNNNGG	2 cut(s)	114, 473
BsmAI	GTCTC	2 cut(s)	311, 357
BsnI	GGCC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	3 cut(s)	71, 685, 807
BspACI	CCGC	2 cut(s)	65, 792
BspANI	GGCC	1 cut(s)	34
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	1 cut(s)	680
BspQI	GCTCTTC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	701
BssECI	CCNNGG	3 cut(s)	108, 251, 708
BssMI	GATC	3 cut(s)	71, 685, 807
BssSI	CACGAG	1 cut(s)	626
Bst2BI	CACGAG	1 cut(s)	626
Bst2UI	CCWGG	3 cut(s)	109, 362, 709
Bst4CI	ACNGT	1 cut(s)	730
Bst6I	CTCTTC	1 cut(s)	161
BstBAI	YACGTR	1 cut(s)	845
BstC8I	GCNNGC	1 cut(s)	148
BstDEI	CTNAG	3 cut(s)	40, 68, 308
BstDSI	CCRYGG	1 cut(s)	251
BstENI	CCTNNNNNAGG	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	267
BstKTI	GATC	3 cut(s)	74, 688, 810
BstMAI	GTCTC	2 cut(s)	311, 357
BstMBI	GATC	3 cut(s)	71, 685, 807
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNI	CCWGG	3 cut(s)	109, 362, 709
BstSCI	CCNGG	3 cut(s)	107, 360, 707
BstSNI	TACGTA	1 cut(s)	845
BstV1I	GCAGC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BsuI	GTATCC	1 cut(s)	606
BsuRI	GGCC	1 cut(s)	34
BtgI	CCRYGG	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	267
BtsI	GCAGTG	1 cut(s)	817
BtsIMutI	CAGTG	1 cut(s)	817
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	460
CseI	GACGC	1 cut(s)	790
Csp6I	GTAC	3 cut(s)	56, 281, 846
CviAII	CATG	3 cut(s)	328, 395, 671
CviQI	GTAC	3 cut(s)	56, 281, 846
DdeI	CTNAG	3 cut(s)	40, 68, 308
DpnI	GATC	3 cut(s)	73, 687, 809
DpnII	GATC	3 cut(s)	71, 685, 807
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Eco105I	TACGTA	1 cut(s)	845
Eco47I	GGWCC	1 cut(s)	460
EcoNI	CCTNNNNNAGG	1 cut(s)	112
EcoRII	CCWGG	3 cut(s)	107, 360, 707
EcoT22I	ATGCAT	1 cut(s)	196
FaeI	CATG	3 cut(s)	331, 398, 674
FatI	CATG	3 cut(s)	327, 394, 670
FbaI	TGATCA	1 cut(s)	807
Fnu4HI	GCNGC	1 cut(s)	151
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	151
GluI	GCNGC	1 cut(s)	151
GsaI	CCCAGC	1 cut(s)	798
HaeIII	GGCC	1 cut(s)	34
HgaI	GACGC	1 cut(s)	790
Hin1II	CATG	3 cut(s)	331, 398, 674
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	1 cut(s)	470
HphI	GGTGA	1 cut(s)	706
Hpy188III	TCNNGA	7 cut(s)	356, 467, 512, 599, 628, 689, 805
HpyAV	CCTTC	1 cut(s)	473
HpyCH4III	ACNGT	1 cut(s)	730
HpyCH4IV	ACGT	1 cut(s)	844
HpyCH4V	TGCA	9 cut(s)	77, 150, 194, 346, 377, 388, 455, 521, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	3 cut(s)	40, 68, 308
HpySE526I	ACGT	1 cut(s)	844
Hsp92II	CATG	3 cut(s)	331, 398, 674
Ksp22I	TGATCA	1 cut(s)	807
Kzo9I	GATC	3 cut(s)	71, 685, 807
LguI	GCTCTTC	1 cut(s)	161
LmnI	GCTCC	4 cut(s)	6, 624, 798, 827
Lsp1109I	GCAGC	1 cut(s)	162
LweI	GCATC	4 cut(s)	333, 490, 568, 709
MaeII	ACGT	1 cut(s)	844
MaeIII	GTNAC	1 cut(s)	703
MalI	GATC	3 cut(s)	73, 687, 809
MboI	GATC	3 cut(s)	71, 685, 807
MboII	GAAGA	2 cut(s)	53, 178
MflI	RGATCY	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	5 cut(s)	390, 611, 645, 742, 834
MmeI	TCCRAC	1 cut(s)	646
Mph1103I	ATGCAT	1 cut(s)	196
MseI	TTAA	1 cut(s)	758
MslI	CAYNNNNRTG	2 cut(s)	126, 785
MspA1I	CMGCKG	1 cut(s)	794
MspR9I	CCNGG	3 cut(s)	109, 362, 709
MvaI	CCWGG	3 cut(s)	109, 362, 709
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeII	GATC	3 cut(s)	71, 685, 807
NlaIII	CATG	3 cut(s)	331, 398, 674
NsiI	ATGCAT	1 cut(s)	196
PaqCI	CACCTGC	1 cut(s)	337
PciSI	GCTCTTC	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	470
PkrI	GCNGC	1 cut(s)	152
Ppu21I	YACGTR	1 cut(s)	845
Psp6I	CCWGG	3 cut(s)	107, 360, 707
PspFI	CCCAGC	1 cut(s)	794
PspGI	CCWGG	3 cut(s)	107, 360, 707
PspPI	GGNCC	1 cut(s)	460
PsuI	RGATCY	1 cut(s)	71
RsaI	GTAC	3 cut(s)	57, 282, 847
RsaNI	GTAC	3 cut(s)	56, 281, 846
RseI	CAYNNNNRTG	2 cut(s)	126, 785
SapI	GCTCTTC	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	758
SatI	GCNGC	1 cut(s)	151
Sau3AI	GATC	3 cut(s)	71, 685, 807
Sau96I	GGNCC	1 cut(s)	460
ScaI	AGTACT	1 cut(s)	57
ScrFI	CCNGG	3 cut(s)	109, 362, 709
SduI	GDGCHC	1 cut(s)	11
SfaNI	GCATC	4 cut(s)	333, 490, 568, 709
SinI	GGWCC	1 cut(s)	460
SmiMI	CAYNNNNRTG	2 cut(s)	126, 785
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
SnaBI	TACGTA	1 cut(s)	845
Sse9I	AATT	5 cut(s)	390, 611, 645, 742, 834
SsiI	CCGC	2 cut(s)	65, 792
StyD4I	CCNGG	3 cut(s)	107, 360, 707
TaaI	ACNGT	1 cut(s)	730
TaiI	ACGT	1 cut(s)	847
TaqI	TCGA	1 cut(s)	831
TasI	AATT	5 cut(s)	390, 611, 645, 742, 834
TatI	WGTACW	1 cut(s)	55
TfiI	GAWTC	1 cut(s)	470
Tru1I	TTAA	1 cut(s)	758
Tru9I	TTAA	1 cut(s)	758
TscAI	CASTG	1 cut(s)	824
TseI	GCWGC	1 cut(s)	150
TspDTI	ATGAA	3 cut(s)	14, 383, 429
TspRI	CASTG	1 cut(s)	824
VpaK11BI	GGWCC	1 cut(s)	460
XagI	CCTNNNNNAGG	1 cut(s)	112
XapI	RAATTY	3 cut(s)	390, 742, 834
ZrmI	AGTACT	1 cut(s)	57
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.