Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004057

Physical Location & Seq

Genomic Coordinates Reverse (-)

8460012 .. 8464276

Gene Structure 4265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G148100.13

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGGAGCAGCAGCTTGGGGCTTCATCATTGGTCTGTGTTAGCCTCTCAGCGGGCAATTCTGCCACAAAATTCCGCGAAGCCATTACAAAAGTTCCATTCTTTGCCCACAACTGTCACTGTTGCTTGCATTGCCACCTCCAGAGCTTCCTCTGTGAGGTGCCATTTAGGTTGCTTTGGCTTCACAGCATTCAACAGAAAGTTGAGGAAGAGTGTACGAGGCTGTGCTACCAACCCATTTGTTGTTGCCAATGATGAGAAGTATGGAAACAAGCAGGTTATTAGTATTACTCCACAAGTTTACGATTACATTCTTGCCAATGTTCGAGAGCCAGAGGTTCTACGACAACTTAGGGAGGAGACTGCCTCTATGCACGGTAGTCAGATGCAGGTGTCTCCTGACCAGGCTCAACTGCTTGCAATGCTTGTGCAGATTCATGGGGCTGAGAAGTGTATTGAAGTTGGTGTTTATACTGGATATTCATCGTTGGCTACTGCATTGGTCCTTCCTGAATCAGGGAGTTTAGTAGCCTGTGAAAGAGATGGCAGAAGTCTTGAGGTCGCAAAAAAGTATTATGATAAAGCGAATGTTTCCCACAAGGTGCATGTTAAATATGGATTTGCAGCAGATGCATTAAGATCACTGATTCTGAGCGGTGAAGCATGTAGCTATGATTTTGCATTTGTTGATGCTGACAAGAGAATGTATCAGGAATACTTTGAACTGTTGCTACAACTTGTCAAGGTTGGGGGTCTAATTGTGTTCGATAATGTTCTCTGGCATGGAAAAGTTGCTGACCCAGAGGTGAATGATGCCAAGACTGTCAGCATTAGAAATTTCAATACAAGTATAATGCAGGACAAGCGTGTAAGCATTAGCATGGTACCCATTGGAGATGGCATGACAATCTGCCGAAAAAGGCAACCTCATAACAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

314

Amino Acids

34.59

Weight (kDa)

9.03

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61990 AT3G62000 AT3G62000
fragaria_vesca	FvH4_3g16510
malus_domestica	MD05G1209400.v1.1
prunus_persica	Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1
pyrus_communis	pycom05g19550
rosa_chinensis	RchiOBHm_Chr5g0027561
rosa_laevigata	RLG00000033026
rosa_multiflora	Rmu_sc0001647.1_g000001 Rmu_sc0011056.1_g000008
rosa_roxburghii	Rroxscaffold_1G00051980
rosa_samantha	Rh5AG193900 Rh5BG191900 Rh5CG212100 Rh5DG193800
rosa_wichuraiana	Rw5G017680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	379
Acc36I	ACCTGC	2 cut(s)	265, 379
Acc65I	GGTACC	1 cut(s)	883
AccB1I	GGYRCC	2 cut(s)	159, 883
AccBSI	CCGCTC	1 cut(s)	654
AccII	CGCG	1 cut(s)	77
AciI	CCGC	3 cut(s)	52, 75, 654
AcsI	RAATTY	2 cut(s)	70, 835
AdeI	CACNNNGTG	1 cut(s)	601
AfaI	GTAC	2 cut(s)	216, 885
AfiI	CCNNNNNNNGG	3 cut(s)	51, 156, 515
AgsI	TTSAA	4 cut(s)	193, 458, 722, 841
AjnI	CCWGG	1 cut(s)	402
AluBI	AGCT	3 cut(s)	15, 146, 669
AluI	AGCT	3 cut(s)	15, 146, 669
Alw26I	GTCTC	2 cut(s)	353, 399
ApeKI	GCWGC	3 cut(s)	9, 12, 623
ApoI	RAATTY	2 cut(s)	70, 835
Asp718I	GGTACC	1 cut(s)	883
AspS9I	GGNCC	1 cut(s)	502
AsuHPI	GGTGA	2 cut(s)	668, 817
AvaII	GGWCC	1 cut(s)	502
BanI	GGYRCC	2 cut(s)	159, 883
BbvI	GCAGC	3 cut(s)	21, 24, 635
BccI	CCATC	2 cut(s)	536, 890
BciT130I	CCWGG	1 cut(s)	404
BcoDI	GTCTC	2 cut(s)	353, 399
BfuAI	ACCTGC	2 cut(s)	265, 379
BisI	GCNGC	3 cut(s)	10, 13, 624
BlsI	GCNGC	3 cut(s)	11, 14, 625
Bme1390I	CCNGG	1 cut(s)	404
Bme18I	GGWCC	1 cut(s)	502
BmgT120I	GGNCC	1 cut(s)	502
BmiI	GGNNCC	2 cut(s)	161, 885
BmrFI	CCNGG	1 cut(s)	404
BmsI	GCATC	4 cut(s)	375, 619, 679, 802
BplI	GAGNNNNNCTC	2 cut(s)	350, 382
BpmI	CTGGAG	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	575
BsaBI	GATNNNNATC	1 cut(s)	481
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 156, 515
Bse1I	ACTGG	1 cut(s)	478
Bse3DI	GCAATG	2 cut(s)	129, 426
Bse8I	GATNNNNATC	1 cut(s)	481
BseBI	CCWGG	1 cut(s)	404
BseJI	GATNNNNATC	1 cut(s)	481
BseLI	CCNNNNNNNGG	3 cut(s)	51, 156, 515
BseMI	GCAATG	2 cut(s)	129, 426
BseMII	CTCAG	3 cut(s)	62, 435, 641
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	3 cut(s)	21, 24, 635
BsgI	GTGCAG	1 cut(s)	449
Bsh1236I	CGCG	1 cut(s)	77
BshNI	GGYRCC	2 cut(s)	159, 883
BslI	CCNNNNNNNGG	3 cut(s)	51, 156, 515
BsmAI	GTCTC	2 cut(s)	353, 399
BsmI	GAATGC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	638
BspACI	CCGC	3 cut(s)	52, 75, 654
BspCNI	CTCAG	3 cut(s)	61, 436, 642
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	2 cut(s)	161, 885
BspMI	ACCTGC	2 cut(s)	265, 379
BspT107I	GGYRCC	2 cut(s)	159, 883
BsrBI	CCGCTC	1 cut(s)	654
BsrDI	GCAATG	2 cut(s)	129, 426
BsrI	ACTGG	1 cut(s)	478
BssMI	GATC	1 cut(s)	638
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	5 cut(s)	115, 121, 377, 726, 823
Bst6I	CTCTTC	1 cut(s)	203
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstC8I	GCNNGC	3 cut(s)	54, 127, 417
BstDEI	CTNAG	4 cut(s)	48, 350, 444, 650
BstENI	CCTNNNNNAGG	2 cut(s)	154, 513
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	1 cut(s)	641
BstMAI	GTCTC	2 cut(s)	353, 399
BstMBI	GATC	1 cut(s)	638
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 421, 629, 862
BstNI	CCWGG	1 cut(s)	404
BstNSI	RCATGY	2 cut(s)	608, 666
BstSCI	CCNGG	1 cut(s)	402
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	3 cut(s)	21, 24, 635
BtsIMutI	CAGTG	2 cut(s)	117, 641
BveI	ACCTGC	2 cut(s)	265, 379
Cac8I	GCNNGC	3 cut(s)	54, 127, 417
Cfr13I	GGNCC	1 cut(s)	502
Csp6I	GTAC	2 cut(s)	215, 884
CviAII	CATG	6 cut(s)	437, 605, 663, 782, 880, 901
CviQI	GTAC	2 cut(s)	215, 884
DdeI	CTNAG	4 cut(s)	48, 350, 444, 650
DpnI	GATC	1 cut(s)	640
DpnII	GATC	1 cut(s)	638
DraIII	CACNNNGTG	1 cut(s)	601
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	502
EcoNI	CCTNNNNNAGG	2 cut(s)	154, 513
EcoRII	CCWGG	1 cut(s)	402
EcoT22I	ATGCAT	1 cut(s)	634
FaeI	CATG	6 cut(s)	440, 608, 666, 785, 883, 904
FatI	CATG	6 cut(s)	436, 604, 662, 781, 879, 900
FauI	CCCGC	1 cut(s)	45
Fnu4HI	GCNGC	3 cut(s)	10, 13, 624
Fsp4HI	GCNGC	3 cut(s)	10, 13, 624
GluI	GCNGC	3 cut(s)	10, 13, 624
GsuI	CTGGAG	1 cut(s)	124
Hin1II	CATG	6 cut(s)	440, 608, 666, 785, 883, 904
HinfI	GANTC	3 cut(s)	433, 512, 646
HphI	GGTGA	2 cut(s)	668, 817
Hpy166II	GTNNAC	2 cut(s)	215, 301
Hpy188I	TCNGA	2 cut(s)	384, 651
Hpy188III	TCNNGA	6 cut(s)	141, 326, 398, 509, 554, 710
Hpy8I	GTNNAC	2 cut(s)	215, 301
HpyAV	CCTTC	1 cut(s)	515
HpyCH4III	ACNGT	5 cut(s)	115, 121, 377, 726, 823
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 421, 629, 862
HpyF3I	CTNAG	4 cut(s)	48, 350, 444, 650
Hsp92II	CATG	6 cut(s)	440, 608, 666, 785, 883, 904
KpnI	GGTACC	1 cut(s)	887
Kzo9I	GATC	1 cut(s)	638
LmnI	GCTCC	1 cut(s)	6
Lsp1109I	GCAGC	3 cut(s)	21, 24, 635
LweI	GCATC	4 cut(s)	375, 619, 679, 802
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	1 cut(s)	640
MbiI	CCGCTC	1 cut(s)	654
MboI	GATC	1 cut(s)	638
MboII	GAAGA	1 cut(s)	220
MluCI	AATT	4 cut(s)	57, 70, 756, 835
Mph1103I	ATGCAT	1 cut(s)	634
MseI	TTAA	2 cut(s)	609, 635
MslI	CAYNNNNRTG	1 cut(s)	878
MspA1I	CMGCKG	1 cut(s)	52
MspR9I	CCNGG	1 cut(s)	404
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	404
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	4 cut(s)	131, 421, 629, 862
NdeII	GATC	1 cut(s)	638
NlaIII	CATG	6 cut(s)	440, 608, 666, 785, 883, 904
NlaIV	GGNNCC	2 cut(s)	161, 885
NmuCI	GTSAC	1 cut(s)	115
NsiI	ATGCAT	1 cut(s)	634
NspI	RCATGY	2 cut(s)	608, 666
PaqCI	CACCTGC	1 cut(s)	379
PctI	GAATGC	1 cut(s)	188
PfeI	GAWTC	3 cut(s)	433, 512, 646
PkrI	GCNGC	3 cut(s)	11, 14, 625
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	2 cut(s)	161, 885
PspPI	GGNCC	1 cut(s)	502
PsrI	GAACNNNNNNTAC	2 cut(s)	714, 746
RsaI	GTAC	2 cut(s)	216, 885
RsaNI	GTAC	2 cut(s)	215, 884
RseI	CAYNNNNRTG	1 cut(s)	878
SaqAI	TTAA	2 cut(s)	609, 635
SatI	GCNGC	3 cut(s)	10, 13, 624
Sau3AI	GATC	1 cut(s)	638
Sau96I	GGNCC	1 cut(s)	502
ScrFI	CCNGG	1 cut(s)	404
SfaNI	GCATC	4 cut(s)	375, 619, 679, 802
SinI	GGWCC	1 cut(s)	502
SmiMI	CAYNNNNRTG	1 cut(s)	878
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse9I	AATT	4 cut(s)	57, 70, 756, 835
SsiI	CCGC	3 cut(s)	52, 75, 654
StyD4I	CCNGG	1 cut(s)	402
TaaI	ACNGT	5 cut(s)	115, 121, 377, 726, 823
TaqI	TCGA	2 cut(s)	325, 765
TasI	AATT	4 cut(s)	57, 70, 756, 835
TfiI	GAWTC	3 cut(s)	433, 512, 646
Tru1I	TTAA	2 cut(s)	609, 635
Tru9I	TTAA	2 cut(s)	609, 635
TscAI	CASTG	2 cut(s)	124, 648
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	3 cut(s)	9, 12, 623
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	3 cut(s)	14, 425, 471
TspRI	CASTG	2 cut(s)	124, 648
VpaK11BI	GGWCC	1 cut(s)	502
XagI	CCTNNNNNAGG	2 cut(s)	154, 513
XapI	RAATTY	2 cut(s)	70, 835
XceI	RCATGY	2 cut(s)	608, 666
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.