AT3G63210

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010787
Physical Location & Seq
Reverse (-)
23353514 .. 23355480
1967 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G63210.1

Sequence Viewer

Length: 792 bp
ATGCTTAGAAACAAACCTAGAGCAGCCGTGACGACTAAGAAACAAACATCTCTGTTAATGGCTGATCAACCTCCACCTCCAAAGCCTAACACTTGCCACTGCTCACCATCTCTCTTTAGCTCTCCCAAGTTTAGGTTTTTCACTTCTAAGATGATGATGACTCCCTTTGACTCTGATTTCTCACTCGTTAGCCCTACGTCTATACTCGAAGCTAACCCATCCATCTTCTCCTCCAAAAACCCTAAACCCGTTTCCTATTTCGAGCCAACTATCCCTAATCCCCAGCGTTTTCACTCTCCAGACGTCTTTGGCCTAGCCGATCTCGTGAAAGACGGAGACAGTAACAGAGACCACTCTAGAAAACCTGTCAACAAGATGGTCCTTTTCGGGTCAAAGCTCAGAGTCCAGATCCCATCATCAGCTGATTTTGGAACTAAAACCGGCATCAGATATCCTCCTTGTCAACTTAGTCCTTGTGTCCAAACGAAGGTCTTAGCAGTGAGCGAGATTGACCAGACGGAGGACTACACGCGCGTCATCTCTCACGGTCCTAACCCAACCATCACTCATATCTTCGACAACTCTGTTTTCGTGGAGGCTACTCCTTGCTCTGTTCCTTTACCCCAACCAGCCATGGAGACCAAGAGCACCGAGAGTTTTCTAAGCCGTTGCTTCACCTGCAAGAAGAATCTTGACCAGAAACAGGACATCTACATATACAGGGGAGAGAAAGGTTTTTGCAGCAGCGAGTGCAGGTACCAGGAGATGCTTCTTGATCAAATGGAGACCTAG

Protein Analysis

263

Amino Acids

29.53

Weight (kDa)

8.68

Isoelectric Point (pI)

48.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 214 - 260 2.6e-20 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010787)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63210
fragaria_vesca FvH4_2g23270 FvH4_2g23270 FvH4_2g23270
malus_domestica MD03G1262000.v1.1 MD11G1282700.v1.1
prunus_persica Prupe.8G238300_v2.0.a1
pyrus_communis pycom11g25040
rosa_chinensis RchiOBHm_Chr6g0290641
rosa_laevigata RLG00000012188
rosa_multiflora Rmu_sc0006791.1_g000009
rosa_roxburghii Rroxscaffold_7G00176850
rosa_rugosa Rorug06G0213800 Rorug06G0213900 Rorug06G0213900 Rorug06G0214000
rosa_samantha Rh6AG324400 Rh6BG331900 Rh6DG325100
rosa_wichuraiana Rw6G028160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 686
AatII GACGTC 1 cut(s) 306
Acc36I ACCTGC 2 cut(s) 686, 744
Acc65I GGTACC 1 cut(s) 756
AccB1I GGYRCC 1 cut(s) 756
AccII CGCG 2 cut(s) 532, 534
AclWI GGATC 1 cut(s) 403
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 1 cut(s) 758
AfiI CCNNNNNNNGG 4 cut(s) 132, 487, 520, 703
AjnI CCWGG 1 cut(s) 759
AluBI AGCT 4 cut(s) 120, 212, 397, 422
AluI AGCT 4 cut(s) 120, 212, 397, 422
Alw21I GWGCWC 1 cut(s) 650
Alw26I GTCTC 4 cut(s) 330, 342, 632, 779
AlwI GGATC 1 cut(s) 403
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 3 cut(s) 23, 741, 744
Asp718I GGTACC 1 cut(s) 756
AspLEI GCGC 1 cut(s) 534
AspS9I GGNCC 2 cut(s) 379, 548
AsuHPI GGTGA 2 cut(s) 96, 667
AvaII GGWCC 2 cut(s) 379, 548
BanI GGYRCC 1 cut(s) 756
BauI CACGAG 1 cut(s) 323
Bbv12I GWGCWC 1 cut(s) 650
BbvI GCAGC 3 cut(s) 35, 753, 756
BccI CCATC 6 cut(s) 115, 226, 230, 370, 421, 569
BceAI ACGGC 2 cut(s) 11, 651
BciT130I CCWGG 1 cut(s) 761
BclI TGATCA 2 cut(s) 64, 775
BcoDI GTCTC 4 cut(s) 330, 342, 632, 779
BfaI CTAG 4 cut(s) 18, 314, 357, 790
BfuAI ACCTGC 2 cut(s) 686, 744
BisI GCNGC 3 cut(s) 24, 742, 745
BlsI GCNGC 3 cut(s) 25, 743, 746
Bme1390I CCNGG 1 cut(s) 761
Bme18I GGWCC 2 cut(s) 379, 548
BmgT120I GGNCC 2 cut(s) 379, 548
BmiI GGNNCC 1 cut(s) 758
BmrFI CCNGG 1 cut(s) 761
BmsI GCATC 2 cut(s) 453, 756
BpmI CTGGAG 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 303
BsaI GGTCTC 3 cut(s) 342, 632, 779
BsaJI CCNNGG 1 cut(s) 633
Bsc4I CCNNNNNNNGG 4 cut(s) 132, 487, 520, 703
Bse118I RCCGGY 1 cut(s) 440
BseBI CCWGG 1 cut(s) 761
BseDI CCNNGG 1 cut(s) 633
BseGI GGATG 1 cut(s) 218
BseLI CCNNNNNNNGG 4 cut(s) 132, 487, 520, 703
BseMII CTCAG 1 cut(s) 412
BseRI GAGGAG 1 cut(s) 220
BseXI GCAGC 3 cut(s) 35, 753, 756
BseYI CCCAGC 1 cut(s) 282
BsgI GTGCAG 1 cut(s) 772
Bsh1236I CGCG 2 cut(s) 532, 534
BshFI GGCC 1 cut(s) 312
BshNI GGYRCC 1 cut(s) 756
BsiHKAI GWGCWC 1 cut(s) 650
BsiSI CCGG 1 cut(s) 441
BslI CCNNNNNNNGG 4 cut(s) 132, 487, 520, 703
BsmAI GTCTC 4 cut(s) 330, 342, 632, 779
BsnI GGCC 1 cut(s) 312
Bso31I GGTCTC 3 cut(s) 342, 632, 779
Bsp1286I GDGCHC 1 cut(s) 650
Bsp143I GATC 4 cut(s) 64, 319, 408, 775
Bsp19I CCATGG 1 cut(s) 633
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 1 cut(s) 411
BspFNI CGCG 2 cut(s) 532, 534
BspLI GGNNCC 1 cut(s) 758
BspMI ACCTGC 2 cut(s) 686, 744
BspPI GGATC 1 cut(s) 403
BspT107I GGYRCC 1 cut(s) 756
BspTNI GGTCTC 3 cut(s) 342, 632, 779
BsrFI RCCGGY 1 cut(s) 440
BssAI RCCGGY 1 cut(s) 440
BssECI CCNNGG 1 cut(s) 633
BssMI GATC 4 cut(s) 64, 319, 408, 775
BssNI GRCGYC 1 cut(s) 303
BssSI CACGAG 1 cut(s) 323
BssT1I CCWWGG 1 cut(s) 633
Bst2BI CACGAG 1 cut(s) 323
Bst2UI CCWGG 1 cut(s) 761
Bst4CI ACNGT 2 cut(s) 341, 548
BstACI GRCGYC 1 cut(s) 303
BstAPI GCANNNNNTGC 1 cut(s) 750
BstDEI CTNAG 7 cut(s) 5, 36, 147, 398, 467, 493, 662
BstDSI CCRYGG 1 cut(s) 633
BstF5I GGATG 1 cut(s) 218
BstFNI CGCG 2 cut(s) 532, 534
BstHHI GCGC 1 cut(s) 534
BstKTI GATC 4 cut(s) 67, 322, 411, 778
BstMAI GTCTC 4 cut(s) 330, 342, 632, 779
BstMBI GATC 4 cut(s) 64, 319, 408, 775
BstMWI GCNNNNNNNGC 2 cut(s) 678, 750
BstNI CCWGG 1 cut(s) 761
BstSCI CCNGG 1 cut(s) 759
BstUI CGCG 2 cut(s) 532, 534
BstV1I GCAGC 3 cut(s) 35, 753, 756
BstX2I RGATCY 1 cut(s) 408
BstYI RGATCY 1 cut(s) 408
BsuRI GGCC 1 cut(s) 312
BtgI CCRYGG 1 cut(s) 633
BtsCI GGATG 1 cut(s) 218
BtsI GCAGTG 2 cut(s) 97, 504
BtsIMutI CAGTG 2 cut(s) 97, 504
BveI ACCTGC 2 cut(s) 686, 744
CfoI GCGC 1 cut(s) 534
Cfr10I RCCGGY 1 cut(s) 440
Cfr13I GGNCC 2 cut(s) 379, 548
CseI GACGC 1 cut(s) 523
Csp6I GTAC 1 cut(s) 757
CviAII CATG 1 cut(s) 634
CviQI GTAC 1 cut(s) 757
DdeI CTNAG 7 cut(s) 5, 36, 147, 398, 467, 493, 662
DpnI GATC 4 cut(s) 66, 321, 410, 777
DpnII GATC 4 cut(s) 64, 319, 408, 775
Eco130I CCWWGG 1 cut(s) 633
Eco31I GGTCTC 3 cut(s) 342, 632, 779
Eco32I GATATC 1 cut(s) 452
Eco47I GGWCC 2 cut(s) 379, 548
EcoRII CCWGG 1 cut(s) 759
EcoRV GATATC 1 cut(s) 452
EcoT14I CCWWGG 1 cut(s) 633
ErhI CCWWGG 1 cut(s) 633
FaeI CATG 1 cut(s) 637
FaiI YATR 5 cut(s) 203, 570, 635, 716, 718
FatI CATG 1 cut(s) 633
FbaI TGATCA 2 cut(s) 64, 775
Fnu4HI GCNGC 3 cut(s) 24, 742, 745
FokI GGATG 1 cut(s) 205
Fsp4HI GCNGC 3 cut(s) 24, 742, 745
FspBI CTAG 4 cut(s) 18, 314, 357, 790
GlaI GCGC 1 cut(s) 533
GluI GCNGC 3 cut(s) 24, 742, 745
GsaI CCCAGC 1 cut(s) 286
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 1 cut(s) 312
HapII CCGG 1 cut(s) 441
HgaI GACGC 1 cut(s) 523
HhaI GCGC 1 cut(s) 534
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 1 cut(s) 637
Hin6I GCGC 1 cut(s) 532
HinP1I GCGC 1 cut(s) 532
HincII GTYRAC 2 cut(s) 370, 464
HindII GTYRAC 2 cut(s) 370, 464
HinfI GANTC 4 cut(s) 160, 170, 402, 688
HpaII CCGG 1 cut(s) 441
HphI GGTGA 2 cut(s) 96, 667
Hpy166II GTNNAC 2 cut(s) 370, 464
Hpy188I TCNGA 3 cut(s) 175, 401, 449
Hpy188III TCNNGA 6 cut(s) 299, 325, 357, 406, 692, 773
Hpy8I GTNNAC 2 cut(s) 370, 464
HpyAV CCTTC 1 cut(s) 481
HpyCH4III ACNGT 2 cut(s) 341, 548
HpyCH4IV ACGT 2 cut(s) 197, 303
HpyCH4V TGCA 3 cut(s) 681, 741, 753
HpyF10VI GCNNNNNNNGC 2 cut(s) 678, 750
HpyF3I CTNAG 7 cut(s) 5, 36, 147, 398, 467, 493, 662
HpySE526I ACGT 2 cut(s) 197, 303
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 1 cut(s) 637
HspAI GCGC 1 cut(s) 532
KpnI GGTACC 1 cut(s) 760
Ksp22I TGATCA 2 cut(s) 64, 775
Kzo9I GATC 4 cut(s) 64, 319, 408, 775
Lsp1109I GCAGC 3 cut(s) 35, 753, 756
LweI GCATC 2 cut(s) 453, 756
MaeI CTAG 4 cut(s) 18, 314, 357, 790
MaeII ACGT 2 cut(s) 197, 303
MaeIII GTNAC 2 cut(s) 28, 341
MalI GATC 4 cut(s) 66, 321, 410, 777
MboI GATC 4 cut(s) 64, 319, 408, 775
MboII GAAGA 3 cut(s) 217, 565, 697
MflI RGATCY 1 cut(s) 408
MhlI GDGCHC 1 cut(s) 650
MlyI GAGTC 3 cut(s) 154, 164, 411
MnlI CCTC 6 cut(s) 81, 87, 241, 465, 514, 589
MseI TTAA 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 1 cut(s) 441
MspR9I CCNGG 1 cut(s) 761
MvaI CCWGG 1 cut(s) 761
MvnI CGCG 2 cut(s) 532, 534
MwoI GCNNNNNNNGC 2 cut(s) 678, 750
NcoI CCATGG 1 cut(s) 633
NdeII GATC 4 cut(s) 64, 319, 408, 775
NlaIII CATG 1 cut(s) 637
NlaIV GGNNCC 1 cut(s) 758
NmuCI GTSAC 1 cut(s) 28
PaqCI CACCTGC 1 cut(s) 686
PfeI GAWTC 1 cut(s) 688
PkrI GCNGC 3 cut(s) 25, 743, 746
PleI GAGTC 3 cut(s) 154, 164, 410
PpsI GAGTC 3 cut(s) 154, 164, 410
Psp6I CCWGG 1 cut(s) 759
PspFI CCCAGC 1 cut(s) 282
PspGI CCWGG 1 cut(s) 759
PspN4I GGNNCC 1 cut(s) 758
PspPI GGNCC 2 cut(s) 379, 548
PsuI RGATCY 1 cut(s) 408
PvuII CAGCTG 1 cut(s) 422
RsaI GTAC 1 cut(s) 758
RsaNI GTAC 1 cut(s) 757
SaqAI TTAA 1 cut(s) 56
SatI GCNGC 3 cut(s) 24, 742, 745
Sau3AI GATC 4 cut(s) 64, 319, 408, 775
Sau96I GGNCC 2 cut(s) 379, 548
SchI GAGTC 3 cut(s) 154, 164, 411
ScrFI CCNGG 1 cut(s) 761
SduI GDGCHC 1 cut(s) 650
SfaNI GCATC 2 cut(s) 453, 756
SinI GGWCC 2 cut(s) 379, 548
SspMI CTAG 4 cut(s) 18, 314, 357, 790
StyD4I CCNGG 1 cut(s) 759
StyI CCWWGG 1 cut(s) 633
TaaI ACNGT 2 cut(s) 341, 548
TaiI ACGT 2 cut(s) 200, 306
TaqI TCGA 3 cut(s) 207, 261, 576
TfiI GAWTC 1 cut(s) 688
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TscAI CASTG 2 cut(s) 104, 504
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 3 cut(s) 23, 741, 744
Tsp45I GTSAC 1 cut(s) 28
TspGWI ACGGA 2 cut(s) 348, 533
TspRI CASTG 2 cut(s) 104, 504
VpaK11BI GGWCC 2 cut(s) 379, 548
XbaI TCTAGA 1 cut(s) 356
XspI CTAG 4 cut(s) 18, 314, 357, 790
ZraI GACGTC 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.