Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010787

Physical Location & Seq

Genomic Coordinates Forward (+)

34809694 .. 34811733

Gene Structure 2040 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1262000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCGGATTCTCAACCATCTCCAACTCAAAAGAACTACTCAAACATCCCATCTTTTTTCGATTCTCCAAGGTTCAGAGCCTTCACAATAAAGGGCAGTTCTGAAAACGATCCAAATTTTATCAGCCCAACTTCAATTCTTGACACTACCAGGCCATTTGCTTTCGGAAAAAACCCGTTTTCGGGTGATCAAATCCAACCCAGAACCCCAAAAACTCAATCCGGAAACAAACCCTTATGGGAAAAATCTGAGGCCAAAGGCATTGGCCTTGCTATGCTTCAAACACTAAAAGATGAAAACTTTGAAGACAAACATTCAAAAACCAGTAACAGTAAGGTCCTGTTTGGCACTAAGCTCAGAGTTCAAATCCCCAAGACTGAGAATTCCCAGTTTTCAGAAACTGGGTCTGTTAACTCAGGCACCCAAACAGAGAACCCGAATTCGGGTTCGAATTCGGGTTCATGGAGTGGTTGCGTGAGTGAGAGAAGTGAAATGGAGCTTTCTGAGGATTATACTTGTGTGATTTCTCGTGGGGCGAATCCGAGAACGACTCACATATTTGATAACTGCATTGTGGAAAGTTACCATACTTTGTCAGATCAGTCGAGCTCGTGTTCTGCGAATTTTCTTAGCTTTTGTTACACATGCAAGAAGAACCTTGAGCAGAAGATTGACATATACATTTACAGAGGTGAGAAGGCTTTTTGCAGTCGAGAATGCCGCAACCAAGAAATGCTCTTGGATGAAGTTGGGAGCACAGAACTTGATGATACATTTAGGGGTTGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000932 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0010162 GO:0010431 GO:0010494 GO:0021700 GO:0022414 GO:0022611 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033993 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071695 GO:0097305 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

264

Amino Acids

29.32

Weight (kDa)

5.55

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-FLZ	PF04570	203 - 249	4.9e-20	zinc-finger of the FCS-type, C2-C2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63210
fragaria_vesca	FvH4_2g23270 FvH4_2g23270 FvH4_2g23270
malus_domestica	MD03G1262000.v1.1 MD11G1282700.v1.1
prunus_persica	Prupe.8G238300_v2.0.a1
pyrus_communis	pycom11g25040
rosa_chinensis	RchiOBHm_Chr6g0290641
rosa_laevigata	RLG00000012188
rosa_multiflora	Rmu_sc0006791.1_g000009
rosa_roxburghii	Rroxscaffold_7G00176850
rosa_rugosa	Rorug06G0213800 Rorug06G0213900 Rorug06G0213900 Rorug06G0214000
rosa_samantha	Rh6AG324400 Rh6BG331900 Rh6DG325100
rosa_wichuraiana	Rw6G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	419
AccIII	TCCGGA	1 cut(s)	221
AciI	CCGC	2 cut(s)	5, 721
AclWI	GGATC	1 cut(s)	104
AcsI	RAATTY	5 cut(s)	115, 382, 439, 451, 622
AfiI	CCNNNNNNNGG	4 cut(s)	181, 182, 442, 443
AgsI	TTSAA	5 cut(s)	135, 281, 305, 318, 365
AjnI	CCWGG	1 cut(s)	149
AluBI	AGCT	4 cut(s)	355, 499, 609, 633
AluI	AGCT	4 cut(s)	355, 499, 609, 633
Alw21I	GWGCWC	2 cut(s)	611, 758
AlwI	GGATC	1 cut(s)	104
AlwNI	CAGNNNCTG	1 cut(s)	401
Aor13HI	TCCGGA	1 cut(s)	221
AoxI	GGCC	3 cut(s)	152, 252, 265
ApoI	RAATTY	5 cut(s)	115, 382, 439, 451, 622
AspS9I	GGNCC	1 cut(s)	337
AsuHPI	GGTGA	2 cut(s)	197, 704
AsuII	TTCGAA	1 cut(s)	449
AvaII	GGWCC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	419
BanII	GRGCYC	1 cut(s)	611
BauI	CACGAG	2 cut(s)	528, 610
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	2 cut(s)	611, 758
BccI	CCATC	2 cut(s)	25, 58
BciT130I	CCWGG	1 cut(s)	151
BclI	TGATCA	1 cut(s)	187
BisI	GCNGC	1 cut(s)	721
BlsI	GCNGC	1 cut(s)	722
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	1 cut(s)	151
BmrI	ACTGGG	2 cut(s)	382, 411
BmuI	ACTGGG	2 cut(s)	382, 411
BpiI	GAAGAC	1 cut(s)	312
BplI	GAGNNNNNCTC	2 cut(s)	535, 567
Bpu14I	TTCGAA	1 cut(s)	449
BpuEI	CTTGAG	1 cut(s)	680
BsaJI	CCNNGG	1 cut(s)	68
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	4 cut(s)	181, 182, 442, 443
Bse1I	ACTGG	3 cut(s)	324, 388, 406
BseAI	TCCGGA	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	2 cut(s)	45, 748
BseLI	CCNNNNNNNGG	4 cut(s)	181, 182, 442, 443
BseMII	CTCAG	5 cut(s)	240, 369, 370, 429, 495
BseNI	ACTGG	3 cut(s)	324, 388, 406
BshFI	GGCC	3 cut(s)	154, 254, 267
BshNI	GGYRCC	1 cut(s)	419
BsiHKAI	GWGCWC	2 cut(s)	611, 758
BsiSI	CCGG	1 cut(s)	222
BslI	CCNNNNNNNGG	4 cut(s)	181, 182, 442, 443
BsmI	GAATGC	1 cut(s)	722
BsnI	GGCC	3 cut(s)	154, 254, 267
Bsp119I	TTCGAA	1 cut(s)	449
Bsp1286I	GDGCHC	2 cut(s)	611, 758
Bsp13I	TCCGGA	1 cut(s)	221
Bsp143I	GATC	3 cut(s)	109, 187, 598
BspACI	CCGC	2 cut(s)	5, 721
BspANI	GGCC	3 cut(s)	154, 254, 267
BspCNI	CTCAG	5 cut(s)	241, 369, 370, 428, 496
BspEI	TCCGGA	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	421
BspPI	GGATC	1 cut(s)	104
BspT104I	TTCGAA	1 cut(s)	449
BspT107I	GGYRCC	1 cut(s)	419
BsrI	ACTGG	3 cut(s)	324, 388, 406
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	3 cut(s)	109, 187, 598
BssSI	CACGAG	2 cut(s)	528, 610
BssT1I	CCWWGG	1 cut(s)	68
Bst2BI	CACGAG	2 cut(s)	528, 610
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	332
BstBI	TTCGAA	1 cut(s)	449
BstDEI	CTNAG	7 cut(s)	249, 351, 356, 378, 415, 504, 629
BstF5I	GGATG	2 cut(s)	45, 748
BstKTI	GATC	3 cut(s)	112, 190, 601
BstMBI	GATC	3 cut(s)	109, 187, 598
BstNI	CCWGG	1 cut(s)	151
BstNSI	RCATGY	1 cut(s)	648
BstSCI	CCNGG	1 cut(s)	149
BstV2I	GAAGAC	1 cut(s)	312
BsuRI	GGCC	3 cut(s)	154, 254, 267
BtsCI	GGATG	2 cut(s)	45, 748
CaiI	CAGNNNCTG	1 cut(s)	401
Cfr13I	GGNCC	1 cut(s)	337
CviAII	CATG	2 cut(s)	462, 645
DdeI	CTNAG	7 cut(s)	249, 351, 356, 378, 415, 504, 629
DpnI	GATC	3 cut(s)	111, 189, 600
DpnII	GATC	3 cut(s)	109, 187, 598
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	609
Eco130I	CCWWGG	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	611
Eco47I	GGWCC	1 cut(s)	337
Eco53kI	GAGCTC	1 cut(s)	609
EcoICRI	GAGCTC	1 cut(s)	609
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRI	GAATTC	3 cut(s)	382, 439, 451
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	611
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	2 cut(s)	465, 648
FaiI	YATR	9 cut(s)	238, 275, 463, 513, 557, 588, 646, 677, 679
FatI	CATG	2 cut(s)	461, 644
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	1 cut(s)	721
FokI	GGATG	2 cut(s)	32, 755
FriOI	GRGCYC	1 cut(s)	611
Fsp4HI	GCNGC	1 cut(s)	721
GluI	GCNGC	1 cut(s)	721
HaeIII	GGCC	3 cut(s)	154, 254, 267
HapII	CCGG	1 cut(s)	222
Hin1II	CATG	2 cut(s)	465, 648
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	4 cut(s)	8, 62, 538, 550
HpaI	GTTAAC	1 cut(s)	412
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	2 cut(s)	197, 704
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	9 cut(s)	77, 103, 167, 250, 359, 397, 505, 543, 598
Hpy188III	TCNNGA	4 cut(s)	140, 222, 713, 789
Hpy8I	GTNNAC	1 cut(s)	412
HpyAV	CCTTC	2 cut(s)	91, 691
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	3 cut(s)	570, 648, 708
HpyF3I	CTNAG	7 cut(s)	249, 351, 356, 378, 415, 504, 629
Hsp92II	CATG	2 cut(s)	465, 648
Kpn2I	TCCGGA	1 cut(s)	221
Ksp22I	TGATCA	1 cut(s)	187
KspAI	GTTAAC	1 cut(s)	412
Kzo9I	GATC	3 cut(s)	109, 187, 598
LmnI	GCTCC	2 cut(s)	496, 753
LpnPI	CCDG	9 cut(s)	136, 163, 214, 235, 337, 353, 387, 401, 402
MaeIII	GTNAC	3 cut(s)	326, 581, 638
MalI	GATC	3 cut(s)	111, 189, 600
MboI	GATC	3 cut(s)	109, 187, 598
MboII	GAAGA	3 cut(s)	317, 664, 679
MhlI	GDGCHC	2 cut(s)	611, 758
MluCI	AATT	6 cut(s)	115, 135, 382, 439, 451, 622
MlyI	GAGTC	1 cut(s)	544
MmeI	TCCRAC	2 cut(s)	47, 220
MnlI	CCTC	3 cut(s)	244, 499, 683
MroI	TCCGGA	1 cut(s)	221
MseI	TTAA	1 cut(s)	411
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	151
Mva1269I	GAATGC	1 cut(s)	722
MvaI	CCWGG	1 cut(s)	151
NdeII	GATC	3 cut(s)	109, 187, 598
NlaIII	CATG	2 cut(s)	465, 648
NlaIV	GGNNCC	1 cut(s)	421
NspI	RCATGY	1 cut(s)	648
NspV	TTCGAA	1 cut(s)	449
PcsI	WCGNNNNNNNCGW	1 cut(s)	617
PctI	GAATGC	1 cut(s)	722
PfeI	GAWTC	3 cut(s)	8, 62, 538
PkrI	GCNGC	1 cut(s)	722
PleI	GAGTC	1 cut(s)	544
PpsI	GAGTC	1 cut(s)	544
PpuMI	RGGWCCY	1 cut(s)	337
Psp124BI	GAGCTC	1 cut(s)	611
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	421
PspPI	GGNCC	1 cut(s)	337
PspPPI	RGGWCCY	1 cut(s)	337
PstNI	CAGNNNCTG	1 cut(s)	401
SacI	GAGCTC	1 cut(s)	611
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	1 cut(s)	721
Sau3AI	GATC	3 cut(s)	109, 187, 598
Sau96I	GGNCC	1 cut(s)	337
SchI	GAGTC	1 cut(s)	544
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	2 cut(s)	611, 758
SetI	ASST	8 cut(s)	74, 339, 357, 501, 611, 635, 660, 694
SfuI	TTCGAA	1 cut(s)	449
SinI	GGWCC	1 cut(s)	337
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
Sse9I	AATT	6 cut(s)	115, 135, 382, 439, 451, 622
SsiI	CCGC	2 cut(s)	5, 721
SstI	GAGCTC	1 cut(s)	611
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	332
TaqI	TCGA	4 cut(s)	60, 449, 605, 712
TasI	AATT	6 cut(s)	115, 135, 382, 439, 451, 622
TauI	GCSGC	1 cut(s)	723
TfiI	GAWTC	3 cut(s)	8, 62, 538
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TspDTI	ATGAA	3 cut(s)	309, 450, 759
VpaK11BI	GGWCC	1 cut(s)	337
XapI	RAATTY	5 cut(s)	115, 382, 439, 451, 622
XceI	RCATGY	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.