Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010787

Physical Location & Seq

Genomic Coordinates Forward (+)

19052492 .. 19054732

Gene Structure 2241 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23270.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGCTGAGATATAGATCTAGAGCAGTGACCAGCAAGCAAGCTCCAATGGCTGATCACAGCTCTCAACAATCTCAAAACTACTACACCACCAAGATCCCATCTTTCTTTGGTTCTCCAAGATTCAGAGCCTTTTTCACAATAAAGGGTAGTCACTCTGAAACTGACCAAAGCCCTATGATAAGTCCTACTTCAATCCTTGACACCAAGCTTATTTCTCTCCCTTTTGGAAACCCTTTTCCATGTGACAAAAACCAACCCCAGTTAATCCCAAAAGCTTTGTCAGGGACCAAACACTCTTGGGACAACTCAGAGGCCAAAGGCATTGGCCTTGCTCTAGTTGACACACTCATTGATGAAAAATCTGAAGTTAATTGTAGCACTGCTTGTAAGCAAAGTAATGGGAATAAGGTCCTGTTTGGAACTAAGCTTAGAGTTCAAATACCACCCTATCCGGCAAAAGGGTCTGCTAATTCCGGCATCCAAACAGAGAATTCGAATTCGAATTCGTATTCTCCTCAGGCTTTTTCAAGGTGTGTTTCAGTGAGGGAAATGGAGCTTTCTGAGGACTATACATGTGTGATATCTCGTGGACCTAATCCAAGAACAACTCATATATTCGACAACTGCATTGTTGAAAGCTACTACACCTTATCGGATTCAGGCCACTTCTCCAAATCTGCTCCGGAGAATTTCCTTAGCTTCTGTCACACATGCAAGAAGAATCTTGAGCAGAAGATTGACATTTATATCTACAGGGGTGACAAGGCCTTCTGCAGCCGTGAGTGCCGCTACCAAGAAATGCTCCTAGACGATAAAGTTGGAAACCCAGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000932 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0010162 GO:0010431 GO:0010494 GO:0021700 GO:0022414 GO:0022611 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033993 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071695 GO:0097305 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

279

Amino Acids

31.14

Weight (kDa)

8.46

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-FLZ	PF04570	225 - 271	1.3e-20	zinc-finger of the FCS-type, C2-C2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63210
fragaria_vesca	FvH4_2g23270 FvH4_2g23270 FvH4_2g23270
malus_domestica	MD03G1262000.v1.1 MD11G1282700.v1.1
prunus_persica	Prupe.8G238300_v2.0.a1
pyrus_communis	pycom11g25040
rosa_chinensis	RchiOBHm_Chr6g0290641
rosa_laevigata	RLG00000012188
rosa_multiflora	Rmu_sc0006791.1_g000009
rosa_roxburghii	Rroxscaffold_7G00176850
rosa_rugosa	Rorug06G0213800 Rorug06G0213900 Rorug06G0213900 Rorug06G0214000
rosa_samantha	Rh6AG324400 Rh6BG331900 Rh6DG325100
rosa_wichuraiana	Rw6G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	682
AciI	CCGC	1 cut(s)	787
AclWI	GGATC	1 cut(s)	88
AcsI	RAATTY	5 cut(s)	490, 496, 502, 688, 830
AcuI	CTGAAG	1 cut(s)	384
AfiI	CCNNNNNNNGG	1 cut(s)	458
AflIII	ACRYGT	1 cut(s)	572
AgsI	TTSAA	4 cut(s)	192, 437, 528, 635
AluBI	AGCT	8 cut(s)	41, 60, 208, 275, 427, 556, 639, 699
AluI	AGCT	8 cut(s)	41, 60, 208, 275, 427, 556, 639, 699
AlwI	GGATC	1 cut(s)	88
Aor13HI	TCCGGA	1 cut(s)	682
AoxI	GGCC	4 cut(s)	312, 325, 661, 765
ApeKI	GCWGC	1 cut(s)	774
ApoI	RAATTY	5 cut(s)	490, 496, 502, 688, 830
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
AspS9I	GGNCC	3 cut(s)	285, 409, 590
AsuHPI	GGTGA	1 cut(s)	770
AsuII	TTCGAA	2 cut(s)	494, 500
AvaII	GGWCC	3 cut(s)	285, 409, 590
AxyI	CCTNAGG	1 cut(s)	516
BauI	CACGAG	1 cut(s)	585
BbvI	GCAGC	1 cut(s)	786
BccI	CCATC	1 cut(s)	106
BceAI	ACGGC	1 cut(s)	762
BclI	TGATCA	1 cut(s)	52
BfaI	CTAG	3 cut(s)	18, 335, 806
BfmI	CTRYAG	2 cut(s)	751, 772
BglII	AGATCT	1 cut(s)	14
BisI	GCNGC	2 cut(s)	775, 787
BlsI	GCNGC	2 cut(s)	776, 788
Bme18I	GGWCC	3 cut(s)	285, 409, 590
BmgT120I	GGNCC	3 cut(s)	285, 409, 590
BmiI	GGNNCC	1 cut(s)	286
BmrI	ACTGGG	1 cut(s)	253
BmsI	GCATC	1 cut(s)	486
BmuI	ACTGGG	1 cut(s)	253
Bpu10I	CCTNAGC	1 cut(s)	695
Bpu14I	TTCGAA	2 cut(s)	494, 500
BpuEI	CTTGAG	1 cut(s)	746
BsaBI	GATNNNNATC	1 cut(s)	13
BsaWI	WCCGGW	1 cut(s)	682
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	259
Bse21I	CCTNAGG	1 cut(s)	516
Bse8I	GATNNNNATC	1 cut(s)	13
BseAI	TCCGGA	1 cut(s)	682
BseGI	GGATG	1 cut(s)	477
BseJI	GATNNNNATC	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseMII	CTCAG	3 cut(s)	321, 530, 552
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	1 cut(s)	504
BseXI	GCAGC	1 cut(s)	786
BshFI	GGCC	4 cut(s)	314, 327, 663, 767
BsiSI	CCGG	3 cut(s)	452, 474, 683
BslFI	GGGAC	2 cut(s)	298, 314
BslI	CCNNNNNNNGG	1 cut(s)	458
BsmFI	GGGAC	2 cut(s)	298, 314
BsnI	GGCC	4 cut(s)	314, 327, 663, 767
Bsp119I	TTCGAA	2 cut(s)	494, 500
Bsp13I	TCCGGA	1 cut(s)	682
Bsp143I	GATC	3 cut(s)	14, 52, 93
BspACI	CCGC	1 cut(s)	787
BspANI	GGCC	4 cut(s)	314, 327, 663, 767
BspCNI	CTCAG	3 cut(s)	320, 529, 553
BspEI	TCCGGA	1 cut(s)	682
BspLI	GGNNCC	1 cut(s)	286
BspMAI	CTGCAG	1 cut(s)	776
BspPI	GGATC	1 cut(s)	88
BspT104I	TTCGAA	2 cut(s)	494, 500
BsrI	ACTGG	1 cut(s)	259
BssMI	GATC	3 cut(s)	14, 52, 93
BssSI	CACGAG	1 cut(s)	585
Bst2BI	CACGAG	1 cut(s)	585
BstBI	TTCGAA	2 cut(s)	494, 500
BstC8I	GCNNGC	2 cut(s)	35, 39
BstDEI	CTNAG	7 cut(s)	5, 307, 423, 428, 516, 561, 695
BstF5I	GGATG	1 cut(s)	477
BstKTI	GATC	3 cut(s)	17, 55, 96
BstMBI	GATC	3 cut(s)	14, 52, 93
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 783
BstNSI	RCATGY	2 cut(s)	576, 714
BstSFI	CTRYAG	2 cut(s)	751, 772
BstV1I	GCAGC	1 cut(s)	786
BstX2I	RGATCY	2 cut(s)	14, 93
BstYI	RGATCY	2 cut(s)	14, 93
Bsu36I	CCTNAGG	1 cut(s)	516
BsuRI	GGCC	4 cut(s)	314, 327, 663, 767
BtsCI	GGATG	1 cut(s)	477
BtsI	GCAGTG	2 cut(s)	30, 378
BtsIMutI	CAGTG	3 cut(s)	30, 378, 546
Cac8I	GCNNGC	2 cut(s)	35, 39
Cfr13I	GGNCC	3 cut(s)	285, 409, 590
CviAII	CATG	3 cut(s)	240, 573, 711
DdeI	CTNAG	7 cut(s)	5, 307, 423, 428, 516, 561, 695
DpnI	GATC	3 cut(s)	16, 54, 95
DpnII	GATC	3 cut(s)	14, 52, 93
Eco147I	AGGCCT	1 cut(s)	767
Eco32I	GATATC	1 cut(s)	582
Eco47I	GGWCC	3 cut(s)	285, 409, 590
Eco57I	CTGAAG	1 cut(s)	384
Eco81I	CCTNAGG	1 cut(s)	516
EcoO109I	RGGNCCY	1 cut(s)	409
EcoRI	GAATTC	3 cut(s)	490, 496, 502
EcoRV	GATATC	1 cut(s)	582
FaeI	CATG	3 cut(s)	243, 576, 714
FaiI	YATR	9 cut(s)	12, 176, 241, 570, 574, 612, 614, 712, 747
FalI	AAGNNNNNCTT	2 cut(s)	172, 204
FaqI	GGGAC	2 cut(s)	298, 314
FatI	CATG	3 cut(s)	239, 572, 710
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	2 cut(s)	775, 787
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	2 cut(s)	775, 787
FspBI	CTAG	3 cut(s)	18, 335, 806
GluI	GCNGC	2 cut(s)	775, 787
HaeIII	GGCC	4 cut(s)	314, 327, 663, 767
HapII	CCGG	3 cut(s)	452, 474, 683
Hin1II	CATG	3 cut(s)	243, 576, 714
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	3 cut(s)	206, 273, 425
HinfI	GANTC	3 cut(s)	120, 656, 721
HpaII	CCGG	3 cut(s)	452, 474, 683
HphI	GGTGA	1 cut(s)	770
Hpy166II	GTNNAC	2 cut(s)	340, 590
Hpy188I	TCNGA	6 cut(s)	125, 157, 310, 364, 562, 655
Hpy188III	TCNNGA	3 cut(s)	18, 683, 725
Hpy8I	GTNNAC	2 cut(s)	340, 590
HpyAV	CCTTC	1 cut(s)	778
HpyCH4V	TGCA	3 cut(s)	627, 714, 774
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 783
HpyF3I	CTNAG	7 cut(s)	5, 307, 423, 428, 516, 561, 695
Hsp92II	CATG	3 cut(s)	243, 576, 714
Kpn2I	TCCGGA	1 cut(s)	682
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	3 cut(s)	14, 52, 93
LmnI	GCTCC	4 cut(s)	46, 553, 685, 807
Lsp1109I	GCAGC	1 cut(s)	786
LweI	GCATC	1 cut(s)	486
MaeI	CTAG	3 cut(s)	18, 335, 806
MaeIII	GTNAC	5 cut(s)	25, 149, 242, 704, 758
MalI	GATC	3 cut(s)	16, 54, 95
MboI	GATC	3 cut(s)	14, 52, 93
MboII	GAAGA	2 cut(s)	730, 745
MflI	RGATCY	2 cut(s)	14, 93
MluCI	AATT	7 cut(s)	370, 469, 490, 496, 502, 688, 830
MmeI	TCCRAC	1 cut(s)	799
MnlI	CCTC	4 cut(s)	304, 525, 537, 556
MroI	TCCGGA	1 cut(s)	682
MseI	TTAA	2 cut(s)	263, 369
MspI	CCGG	3 cut(s)	452, 474, 683
MwoI	GCNNNNNNNGC	2 cut(s)	47, 783
NdeII	GATC	3 cut(s)	14, 52, 93
NlaIII	CATG	3 cut(s)	243, 576, 714
NlaIV	GGNNCC	1 cut(s)	286
NmuCI	GTSAC	5 cut(s)	25, 149, 242, 704, 758
NspI	RCATGY	2 cut(s)	576, 714
NspV	TTCGAA	2 cut(s)	494, 500
PceI	AGGCCT	1 cut(s)	767
PciI	ACATGT	1 cut(s)	572
PfeI	GAWTC	3 cut(s)	120, 656, 721
PkrI	GCNGC	2 cut(s)	776, 788
PpuMI	RGGWCCY	1 cut(s)	409
PscI	ACATGT	1 cut(s)	572
Psp5II	RGGWCCY	1 cut(s)	409
PspN4I	GGNNCC	1 cut(s)	286
PspPI	GGNCC	3 cut(s)	285, 409, 590
PspPPI	RGGWCCY	1 cut(s)	409
PstI	CTGCAG	1 cut(s)	776
PsuI	RGATCY	2 cut(s)	14, 93
SaqAI	TTAA	2 cut(s)	263, 369
SatI	GCNGC	2 cut(s)	775, 787
Sau3AI	GATC	3 cut(s)	14, 52, 93
Sau96I	GGNCC	3 cut(s)	285, 409, 590
SfaNI	GCATC	1 cut(s)	486
SfcI	CTRYAG	2 cut(s)	751, 772
SfuI	TTCGAA	2 cut(s)	494, 500
SinI	GGWCC	3 cut(s)	285, 409, 590
SmlI	CTYRAG	1 cut(s)	725
SmoI	CTYRAG	1 cut(s)	725
Sse9I	AATT	7 cut(s)	370, 469, 490, 496, 502, 688, 830
SseBI	AGGCCT	1 cut(s)	767
SsiI	CCGC	1 cut(s)	787
SspMI	CTAG	3 cut(s)	18, 335, 806
StuI	AGGCCT	1 cut(s)	767
TaqI	TCGA	3 cut(s)	494, 500, 618
TasI	AATT	7 cut(s)	370, 469, 490, 496, 502, 688, 830
TauI	GCSGC	1 cut(s)	789
TfiI	GAWTC	3 cut(s)	120, 656, 721
Tru1I	TTAA	2 cut(s)	263, 369
Tru9I	TTAA	2 cut(s)	263, 369
TscAI	CASTG	3 cut(s)	30, 385, 546
TseFI	GTSAC	5 cut(s)	25, 149, 242, 704, 758
TseI	GCWGC	1 cut(s)	774
Tsp45I	GTSAC	5 cut(s)	25, 149, 242, 704, 758
TspDTI	ATGAA	1 cut(s)	369
TspRI	CASTG	3 cut(s)	30, 385, 546
VpaK11BI	GGWCC	3 cut(s)	285, 409, 590
XapI	RAATTY	5 cut(s)	490, 496, 502, 688, 830
XbaI	TCTAGA	1 cut(s)	17
XceI	RCATGY	2 cut(s)	576, 714
XspI	CTAG	3 cut(s)	18, 335, 806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.