Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010787

Physical Location & Seq

Genomic Coordinates Forward (+)

40109983 .. 40112669

Gene Structure 2687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1282700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGCTGAGGAACAGATCCAGAACAGTGACCAGCAAGCAACCTCTAATGGCGGATTCTCAACCGTCTCTAACTCAAAAAAACTACTCAAAAAGCCCATCCTTCTTCGACTCTCCAAGATTCAGAGGCTTCACGATGAAGGGCAGTTCCGAAACCGATTCAAATTTGATCAGCCCAACTTCAATTCTTGACACCACCAAGCCATTCCCCTTCGGAAAAAACCCGTTTTCGGGTGACCAAATCCAACCCAAAACCCCAAAAATTCAACCCGGAAACAAACCCTTTTGGGAGAAATCTGAGGCCAAAGGCATTGGCCTTGCTCTGGTTCAAACACTCAAAGATGAAAACTTGGAAGACAAAAATTCAAAAACCAGTAACCGTAAGGTCCTGTTTGGCACTAAGCTCAGAGTTCAAATCCCCAAGACTTTGAATTCCCAGTTTTCAGAAACTGGGTCTGTTAACTCTGGCATCCAAACAGAGAACCCGAATTCGGGTTCAGGGTCTGGTTGTGTGAGTGAGAGAAGTGAAATGGAGCTTTCTGAGGATTATACTTGTGTGATTTCTCGTGGGCCGAAGCCGAGAACGACTCACATATTTGATAACTGCATTGTGGAAAGTTACCATACTTTGTCGGATCAGTCGAGCTCCGGTTCTGAGAATTTCCTTAGCTTTTGTTACACATGCAGGAAGAATCTTGAGCAGAAGATTGACATCTACATTTACAGAGGCGAGAAGGCGTTTTGCAGTCAAGAATGCCGGTACCAAGAAATGCTCTTGGATGAAGTTGGGAACACACAACTTGATGATACATTTAGGAGTTGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000932 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0010162 GO:0010431 GO:0010494 GO:0021700 GO:0022414 GO:0022611 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033993 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071695 GO:0097305 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

275

Amino Acids

30.72

Weight (kDa)

8.34

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-FLZ	PF04570	212 - 260	1.3e-20	zinc-finger of the FCS-type, C2-C2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63210
fragaria_vesca	FvH4_2g23270 FvH4_2g23270 FvH4_2g23270
malus_domestica	MD03G1262000.v1.1 MD11G1282700.v1.1
prunus_persica	Prupe.8G238300_v2.0.a1
pyrus_communis	pycom11g25040
rosa_chinensis	RchiOBHm_Chr6g0290641
rosa_laevigata	RLG00000012188
rosa_multiflora	Rmu_sc0006791.1_g000009
rosa_roxburghii	Rroxscaffold_7G00176850
rosa_rugosa	Rorug06G0213800 Rorug06G0213900 Rorug06G0213900 Rorug06G0214000
rosa_samantha	Rh6AG324400 Rh6BG331900 Rh6DG325100
rosa_wichuraiana	Rw6G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	756
AccB1I	GGYRCC	1 cut(s)	756
AciI	CCGC	1 cut(s)	50
AclWI	GGATC	2 cut(s)	9, 639
AcsI	RAATTY	6 cut(s)	160, 258, 358, 427, 484, 655
AfaI	GTAC	1 cut(s)	758
AfiI	CCNNNNNNNGG	5 cut(s)	226, 227, 319, 487, 488
AgsI	TTSAA	7 cut(s)	159, 180, 263, 326, 363, 410, 427
AluBI	AGCT	4 cut(s)	400, 532, 642, 666
AluI	AGCT	4 cut(s)	400, 532, 642, 666
Alw21I	GWGCWC	1 cut(s)	644
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	2 cut(s)	9, 639
AlwNI	CAGNNNCTG	2 cut(s)	446, 500
AoxI	GGCC	3 cut(s)	297, 310, 566
ApoI	RAATTY	6 cut(s)	160, 258, 358, 427, 484, 655
Asp718I	GGTACC	1 cut(s)	756
AspS9I	GGNCC	2 cut(s)	382, 566
AsuC2I	CCSGG	1 cut(s)	267
AsuHPI	GGTGA	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	382
BanI	GGYRCC	1 cut(s)	756
BanII	GRGCYC	1 cut(s)	644
BauI	CACGAG	1 cut(s)	561
BbsI	GAAGAC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	644
BbvCI	CCTCAGC	1 cut(s)	5
BccI	CCATC	1 cut(s)	103
BclI	TGATCA	1 cut(s)	165
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	267
Bme18I	GGWCC	1 cut(s)	382
BmgT120I	GGNCC	2 cut(s)	382, 566
BmiI	GGNNCC	1 cut(s)	758
BmrFI	CCNGG	1 cut(s)	267
BmrI	ACTGGG	2 cut(s)	427, 456
BmsI	GCATC	1 cut(s)	474
BmuI	ACTGGG	2 cut(s)	427, 456
BpiI	GAAGAC	1 cut(s)	357
BplI	GAGNNNNNCTC	2 cut(s)	568, 600
Bpu10I	CCTNAGC	2 cut(s)	5, 662
BpuEI	CTTGAG	1 cut(s)	713
BpuMI	CCSGG	1 cut(s)	267
BsaBI	GATNNNNATC	1 cut(s)	707
BsaWI	WCCGGW	1 cut(s)	644
Bsc4I	CCNNNNNNNGG	5 cut(s)	226, 227, 319, 487, 488
Bse118I	RCCGGY	1 cut(s)	753
Bse1I	ACTGG	3 cut(s)	369, 433, 451
Bse8I	GATNNNNATC	1 cut(s)	707
BseGI	GGATG	3 cut(s)	95, 465, 781
BseJI	GATNNNNATC	1 cut(s)	707
BseLI	CCNNNNNNNGG	5 cut(s)	226, 227, 319, 487, 488
BseMII	CTCAG	4 cut(s)	285, 415, 528, 642
BseNI	ACTGG	3 cut(s)	369, 433, 451
BshFI	GGCC	3 cut(s)	299, 312, 568
BshNI	GGYRCC	1 cut(s)	756
BsiHKAI	GWGCWC	1 cut(s)	644
BsiSI	CCGG	3 cut(s)	267, 645, 754
BslI	CCNNNNNNNGG	5 cut(s)	226, 227, 319, 487, 488
BsmAI	GTCTC	1 cut(s)	69
BsmBI	CGTCTC	1 cut(s)	69
BsmI	GAATGC	1 cut(s)	755
BsnI	GGCC	3 cut(s)	299, 312, 568
Bsp1286I	GDGCHC	1 cut(s)	644
Bsp143I	GATC	3 cut(s)	14, 165, 631
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	3 cut(s)	299, 312, 568
BspCNI	CTCAG	4 cut(s)	286, 414, 529, 643
BspLI	GGNNCC	1 cut(s)	758
BspPI	GGATC	2 cut(s)	9, 639
BspT107I	GGYRCC	1 cut(s)	756
BsrFI	RCCGGY	1 cut(s)	753
BsrI	ACTGG	3 cut(s)	369, 433, 451
BssAI	RCCGGY	1 cut(s)	753
BssMI	GATC	3 cut(s)	14, 165, 631
BssSI	CACGAG	1 cut(s)	561
Bst2BI	CACGAG	1 cut(s)	561
Bst4CI	ACNGT	3 cut(s)	25, 63, 377
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	7 cut(s)	5, 294, 396, 401, 537, 651, 662
BstEII	GGTNACC	1 cut(s)	230
BstF5I	GGATG	3 cut(s)	95, 465, 781
BstKTI	GATC	3 cut(s)	17, 168, 634
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	3 cut(s)	14, 165, 631
BstNSI	RCATGY	1 cut(s)	681
BstPI	GGTNACC	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	265
BstV2I	GAAGAC	1 cut(s)	357
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
BsuRI	GGCC	3 cut(s)	299, 312, 568
BtsCI	GGATG	3 cut(s)	95, 465, 781
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	35
CaiI	CAGNNNCTG	2 cut(s)	446, 500
Cfr10I	RCCGGY	1 cut(s)	753
Cfr13I	GGNCC	2 cut(s)	382, 566
Csp6I	GTAC	1 cut(s)	757
CviAII	CATG	1 cut(s)	678
CviQI	GTAC	1 cut(s)	757
DdeI	CTNAG	7 cut(s)	5, 294, 396, 401, 537, 651, 662
DpnI	GATC	3 cut(s)	16, 167, 633
DpnII	GATC	3 cut(s)	14, 165, 631
EciI	GGCGGA	1 cut(s)	65
Ecl136II	GAGCTC	1 cut(s)	642
Eco24I	GRGCYC	1 cut(s)	644
Eco47I	GGWCC	1 cut(s)	382
Eco53kI	GAGCTC	1 cut(s)	642
Eco91I	GGTNACC	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	642
EcoO109I	RGGNCCY	1 cut(s)	382
EcoO65I	GGTNACC	1 cut(s)	230
EcoRI	GAATTC	2 cut(s)	427, 484
EcoT38I	GRGCYC	1 cut(s)	644
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	1 cut(s)	681
FaiI	YATR	4 cut(s)	546, 590, 621, 679
FatI	CATG	1 cut(s)	677
FbaI	TGATCA	1 cut(s)	165
FokI	GGATG	3 cut(s)	82, 452, 788
FriOI	GRGCYC	1 cut(s)	644
HaeIII	GGCC	3 cut(s)	299, 312, 568
HapII	CCGG	3 cut(s)	267, 645, 754
Hin1II	CATG	1 cut(s)	681
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	6 cut(s)	53, 107, 117, 155, 583, 688
HpaI	GTTAAC	1 cut(s)	457
HpaII	CCGG	3 cut(s)	267, 645, 754
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	9 cut(s)	122, 148, 212, 295, 404, 442, 538, 631, 652
Hpy188III	TCNNGA	6 cut(s)	18, 130, 185, 692, 746, 822
Hpy8I	GTNNAC	1 cut(s)	457
HpyAV	CCTTC	4 cut(s)	109, 130, 217, 724
HpyCH4III	ACNGT	3 cut(s)	25, 63, 377
HpyCH4V	TGCA	3 cut(s)	603, 681, 741
HpyF3I	CTNAG	7 cut(s)	5, 294, 396, 401, 537, 651, 662
Hsp92II	CATG	1 cut(s)	681
KpnI	GGTACC	1 cut(s)	760
Ksp22I	TGATCA	1 cut(s)	165
KspAI	GTTAAC	1 cut(s)	457
Kzo9I	GATC	3 cut(s)	14, 165, 631
LmnI	GCTCC	2 cut(s)	529, 647
LweI	GCATC	1 cut(s)	474
MaeIII	GTNAC	5 cut(s)	25, 230, 371, 614, 671
MalI	GATC	3 cut(s)	16, 167, 633
MboI	GATC	3 cut(s)	14, 165, 631
MboII	GAAGA	4 cut(s)	94, 362, 697, 712
MflI	RGATCY	1 cut(s)	14
MhlI	GDGCHC	1 cut(s)	644
MluCI	AATT	7 cut(s)	160, 180, 258, 358, 427, 484, 655
MlyI	GAGTC	2 cut(s)	101, 577
MmeI	TCCRAC	2 cut(s)	265, 609
MnlI	CCTC	5 cut(s)	51, 116, 289, 532, 716
MseI	TTAA	1 cut(s)	456
MspI	CCGG	3 cut(s)	267, 645, 754
MspR9I	CCNGG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	755
NciI	CCSGG	1 cut(s)	267
NdeII	GATC	3 cut(s)	14, 165, 631
NlaIII	CATG	1 cut(s)	681
NlaIV	GGNNCC	1 cut(s)	758
NmeAIII	GCCGAG	1 cut(s)	600
NmuCI	GTSAC	2 cut(s)	25, 230
NspI	RCATGY	1 cut(s)	681
PcsI	WCGNNNNNNNCGW	1 cut(s)	635
PctI	GAATGC	1 cut(s)	755
PfeI	GAWTC	4 cut(s)	53, 117, 155, 688
PleI	GAGTC	2 cut(s)	101, 577
PpsI	GAGTC	2 cut(s)	101, 577
PpuMI	RGGWCCY	1 cut(s)	382
Psp124BI	GAGCTC	1 cut(s)	644
Psp5II	RGGWCCY	1 cut(s)	382
PspEI	GGTNACC	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	758
PspPI	GGNCC	2 cut(s)	382, 566
PspPPI	RGGWCCY	1 cut(s)	382
PstNI	CAGNNNCTG	2 cut(s)	446, 500
PsuI	RGATCY	1 cut(s)	14
RsaI	GTAC	1 cut(s)	758
RsaNI	GTAC	1 cut(s)	757
SacI	GAGCTC	1 cut(s)	644
SaqAI	TTAA	1 cut(s)	456
Sau3AI	GATC	3 cut(s)	14, 165, 631
Sau96I	GGNCC	2 cut(s)	382, 566
SchI	GAGTC	2 cut(s)	101, 577
ScrFI	CCNGG	1 cut(s)	267
SduI	GDGCHC	1 cut(s)	644
SetI	ASST	6 cut(s)	43, 384, 402, 534, 644, 668
SfaNI	GCATC	1 cut(s)	474
SinI	GGWCC	1 cut(s)	382
SmlI	CTYRAG	1 cut(s)	692
SmoI	CTYRAG	1 cut(s)	692
Sse9I	AATT	7 cut(s)	160, 180, 258, 358, 427, 484, 655
SsiI	CCGC	1 cut(s)	50
SstI	GAGCTC	1 cut(s)	644
StyD4I	CCNGG	1 cut(s)	265
TaaI	ACNGT	3 cut(s)	25, 63, 377
TaqI	TCGA	2 cut(s)	105, 638
TasI	AATT	7 cut(s)	160, 180, 258, 358, 427, 484, 655
TfiI	GAWTC	4 cut(s)	53, 117, 155, 688
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	2 cut(s)	25, 230
Tsp45I	GTSAC	2 cut(s)	25, 230
TspDTI	ATGAA	3 cut(s)	149, 354, 792
TspRI	CASTG	1 cut(s)	30
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	6 cut(s)	160, 258, 358, 427, 484, 655
XceI	RCATGY	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.