Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0010787

Physical Location & Seq

Genomic Coordinates Forward (+)

52500072 .. 52502660

Gene Structure 2589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG324400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGCTGAGGAATAGATCTAGAGCAGTGACCAGCAAGCAAGCTCTAATGGCTGATCGCAGCTCTCAACAATCCCAAAACTACTACACAACCAAGATCCCATCTTTCTTTGGTTCTCCAAGATTCAGAGCCTTTTTCACAATAAAGGGTAGCCACTCTGAAACGGACCAAAACCCTATGATAAGTCCCACTTCAATCCTTGACACCAAGCTTTCACTCCCATTTGGAAACCATTTTTCATGTGACAAAAACCAACCCAGTTTAATCCCAAAGGCTTTGTCAGGGAACAAACGCTCTTGGGACAACTCAGAGGTCAAAGGCATTGGCCTTGCTCTTGTTGACACACTCATTGATGAAAAATTTGAAGTGAATAGTAGTAGTGCTTGTAAGCAAAGTAATGGGAATAAGGTCCTGTTTGGAACTAAGCTTAGAGTTCAAATACCTCCCTATCCGGCAAAAGGATCTTCTAATTCCGGCATCCAAACAGAGAATTCTAATTCGAATTCGAATTCTCCTCAGGCCTTTTCAAGGTGTGTCTCAGTGAGGGAAATGGAGCTTTCTGAGGACTATACATGTGTGATATCTCGTGGACCTAATCCAAGAACAACTCATATATTCGACAACTGTATTGTCGAAAGCTACTACACCTTATCGGATTCAGGTCACTTCTCCAAATCTGCTCCGGAGAATTTCCTCAGCTTCTGTCACACATGCAAGAAGAATCTTGAGCAGAACATTGACATTTACATCTACAGGTTTGTTTCGATCACCGAATTTGATATCTCTCATTATTGTTTTGAAAATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000932 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0010162 GO:0010431 GO:0010494 GO:0021700 GO:0022414 GO:0022611 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033993 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071695 GO:0097305 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

268

Amino Acids

30.09

Weight (kDa)

8.57

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-FLZ	PF04570	224 - 251	6.9e-08	zinc-finger of the FCS-type, C2-C2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63210
fragaria_vesca	FvH4_2g23270 FvH4_2g23270 FvH4_2g23270
malus_domestica	MD03G1262000.v1.1 MD11G1282700.v1.1
prunus_persica	Prupe.8G238300_v2.0.a1
pyrus_communis	pycom11g25040
rosa_chinensis	RchiOBHm_Chr6g0290641
rosa_laevigata	RLG00000012188
rosa_multiflora	Rmu_sc0006791.1_g000009
rosa_roxburghii	Rroxscaffold_7G00176850
rosa_rugosa	Rorug06G0213800 Rorug06G0213900 Rorug06G0213900 Rorug06G0214000
rosa_samantha	Rh6AG324400 Rh6BG331900 Rh6DG325100
rosa_wichuraiana	Rw6G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	679
AclWI	GGATC	2 cut(s)	88, 466
AcsI	RAATTY	6 cut(s)	356, 487, 499, 505, 685, 770
AfiI	CCNNNNNNNGG	2 cut(s)	455, 525
AflIII	ACRYGT	1 cut(s)	569
AgsI	TTSAA	5 cut(s)	192, 362, 434, 525, 797
AluBI	AGCT	7 cut(s)	41, 60, 208, 424, 553, 636, 696
AluI	AGCT	7 cut(s)	41, 60, 208, 424, 553, 636, 696
Alw26I	GTCTC	1 cut(s)	538
AlwI	GGATC	2 cut(s)	88, 466
AlwNI	CAGNNNCTG	1 cut(s)	699
Aor13HI	TCCGGA	1 cut(s)	679
AoxI	GGCC	2 cut(s)	322, 516
ApeKI	GCWGC	1 cut(s)	57
ApoI	RAATTY	6 cut(s)	356, 487, 499, 505, 685, 770
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AspS9I	GGNCC	3 cut(s)	163, 406, 587
AsuHPI	GGTGA	1 cut(s)	757
AsuII	TTCGAA	2 cut(s)	497, 503
AvaII	GGWCC	3 cut(s)	163, 406, 587
AxyI	CCTNAGG	1 cut(s)	513
BauI	CACGAG	1 cut(s)	582
BbvCI	CCTCAGC	2 cut(s)	5, 692
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	538
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	748
BglII	AGATCT	1 cut(s)	14
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
Bme18I	GGWCC	3 cut(s)	163, 406, 587
BmgT120I	GGNCC	3 cut(s)	163, 406, 587
BmrI	ACTGGG	1 cut(s)	249
BmsI	GCATC	1 cut(s)	483
BmuI	ACTGGG	1 cut(s)	249
Bpu10I	CCTNAGC	2 cut(s)	5, 692
Bpu14I	TTCGAA	2 cut(s)	497, 503
BpuEI	CTTGAG	1 cut(s)	743
BsaWI	WCCGGW	1 cut(s)	679
Bsc4I	CCNNNNNNNGG	2 cut(s)	455, 525
Bse1I	ACTGG	1 cut(s)	255
Bse21I	CCTNAGG	1 cut(s)	513
BseAI	TCCGGA	1 cut(s)	679
BseGI	GGATG	1 cut(s)	474
BseLI	CCNNNNNNNGG	2 cut(s)	455, 525
BseMII	CTCAG	5 cut(s)	318, 527, 549, 549, 706
BseNI	ACTGG	1 cut(s)	255
BseRI	GAGGAG	1 cut(s)	501
BseXI	GCAGC	1 cut(s)	69
BshFI	GGCC	2 cut(s)	324, 518
BsiSI	CCGG	3 cut(s)	449, 471, 680
BslFI	GGGAC	2 cut(s)	168, 311
BslI	CCNNNNNNNGG	2 cut(s)	455, 525
BsmAI	GTCTC	1 cut(s)	538
BsmFI	GGGAC	2 cut(s)	168, 311
BsnI	GGCC	2 cut(s)	324, 518
Bsp119I	TTCGAA	2 cut(s)	497, 503
Bsp13I	TCCGGA	1 cut(s)	679
Bsp143I	GATC	5 cut(s)	14, 52, 93, 458, 762
BspANI	GGCC	2 cut(s)	324, 518
BspCNI	CTCAG	5 cut(s)	317, 526, 548, 550, 705
BspEI	TCCGGA	1 cut(s)	679
BspPI	GGATC	2 cut(s)	88, 466
BspT104I	TTCGAA	2 cut(s)	497, 503
BsrI	ACTGG	1 cut(s)	255
BssMI	GATC	5 cut(s)	14, 52, 93, 458, 762
BssSI	CACGAG	1 cut(s)	582
Bst2BI	CACGAG	1 cut(s)	582
Bst4CI	ACNGT	1 cut(s)	623
BstBI	TTCGAA	2 cut(s)	497, 503
BstC8I	GCNNGC	2 cut(s)	35, 39
BstDEI	CTNAG	8 cut(s)	5, 304, 420, 425, 513, 535, 558, 692
BstENI	CCTNNNNNAGG	1 cut(s)	523
BstF5I	GGATG	1 cut(s)	474
BstKTI	GATC	5 cut(s)	17, 55, 96, 461, 765
BstMAI	GTCTC	1 cut(s)	538
BstMBI	GATC	5 cut(s)	14, 52, 93, 458, 762
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNSI	RCATGY	2 cut(s)	573, 711
BstSFI	CTRYAG	1 cut(s)	748
BstV1I	GCAGC	1 cut(s)	69
BstX2I	RGATCY	3 cut(s)	14, 93, 458
BstYI	RGATCY	3 cut(s)	14, 93, 458
Bsu36I	CCTNAGG	1 cut(s)	513
BsuRI	GGCC	2 cut(s)	324, 518
BtsCI	GGATG	1 cut(s)	474
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	2 cut(s)	30, 543
Cac8I	GCNNGC	2 cut(s)	35, 39
CaiI	CAGNNNCTG	1 cut(s)	699
Cfr13I	GGNCC	3 cut(s)	163, 406, 587
CviAII	CATG	3 cut(s)	237, 570, 708
DdeI	CTNAG	8 cut(s)	5, 304, 420, 425, 513, 535, 558, 692
DpnI	GATC	5 cut(s)	16, 54, 95, 460, 764
DpnII	GATC	5 cut(s)	14, 52, 93, 458, 762
Eco147I	AGGCCT	1 cut(s)	518
Eco32I	GATATC	2 cut(s)	579, 778
Eco47I	GGWCC	3 cut(s)	163, 406, 587
Eco81I	CCTNAGG	1 cut(s)	513
EcoNI	CCTNNNNNAGG	1 cut(s)	523
EcoO109I	RGGNCCY	1 cut(s)	406
EcoRI	GAATTC	3 cut(s)	487, 499, 505
EcoRV	GATATC	2 cut(s)	579, 778
FaeI	CATG	3 cut(s)	240, 573, 711
FaiI	YATR	7 cut(s)	176, 238, 567, 571, 609, 611, 709
FalI	AAGNNNNNCTT	2 cut(s)	172, 204
FaqI	GGGAC	2 cut(s)	168, 311
FatI	CATG	3 cut(s)	236, 569, 707
Fnu4HI	GCNGC	1 cut(s)	58
FokI	GGATG	1 cut(s)	461
Fsp4HI	GCNGC	1 cut(s)	58
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	324, 518
HapII	CCGG	3 cut(s)	449, 471, 680
Hin1II	CATG	3 cut(s)	240, 573, 711
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	2 cut(s)	206, 422
HinfI	GANTC	3 cut(s)	120, 653, 718
HpaII	CCGG	3 cut(s)	449, 471, 680
HphI	GGTGA	1 cut(s)	757
Hpy166II	GTNNAC	2 cut(s)	337, 587
Hpy188I	TCNGA	5 cut(s)	125, 157, 307, 559, 652
Hpy188III	TCNNGA	3 cut(s)	18, 680, 722
Hpy8I	GTNNAC	2 cut(s)	337, 587
HpyCH4III	ACNGT	1 cut(s)	623
HpyCH4V	TGCA	1 cut(s)	711
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	8 cut(s)	5, 304, 420, 425, 513, 535, 558, 692
Hsp92II	CATG	3 cut(s)	240, 573, 711
Kpn2I	TCCGGA	1 cut(s)	679
Kzo9I	GATC	5 cut(s)	14, 52, 93, 458, 762
LmnI	GCTCC	2 cut(s)	550, 682
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	1 cut(s)	483
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	4 cut(s)	25, 239, 659, 701
MalI	GATC	5 cut(s)	16, 54, 95, 460, 764
MboI	GATC	5 cut(s)	14, 52, 93, 458, 762
MboII	GAAGA	2 cut(s)	453, 727
MflI	RGATCY	3 cut(s)	14, 93, 458
MluCI	AATT	9 cut(s)	356, 466, 487, 493, 499, 505, 685, 770, 802
MnlI	CCTC	6 cut(s)	301, 450, 522, 534, 553, 701
MroI	TCCGGA	1 cut(s)	679
MseI	TTAA	1 cut(s)	260
MspI	CCGG	3 cut(s)	449, 471, 680
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	5 cut(s)	14, 52, 93, 458, 762
NlaIII	CATG	3 cut(s)	240, 573, 711
NmuCI	GTSAC	4 cut(s)	25, 239, 659, 701
NspI	RCATGY	2 cut(s)	573, 711
NspV	TTCGAA	2 cut(s)	497, 503
PceI	AGGCCT	1 cut(s)	518
PciI	ACATGT	1 cut(s)	569
PfeI	GAWTC	3 cut(s)	120, 653, 718
PkrI	GCNGC	1 cut(s)	59
PpuMI	RGGWCCY	1 cut(s)	406
PscI	ACATGT	1 cut(s)	569
Psp5II	RGGWCCY	1 cut(s)	406
PspPI	GGNCC	3 cut(s)	163, 406, 587
PspPPI	RGGWCCY	1 cut(s)	406
PstNI	CAGNNNCTG	1 cut(s)	699
PsuI	RGATCY	3 cut(s)	14, 93, 458
SaqAI	TTAA	1 cut(s)	260
SatI	GCNGC	1 cut(s)	58
Sau3AI	GATC	5 cut(s)	14, 52, 93, 458, 762
Sau96I	GGNCC	3 cut(s)	163, 406, 587
SfaNI	GCATC	1 cut(s)	483
SfcI	CTRYAG	1 cut(s)	748
SfuI	TTCGAA	2 cut(s)	497, 503
SinI	GGWCC	3 cut(s)	163, 406, 587
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
Sse9I	AATT	9 cut(s)	356, 466, 487, 493, 499, 505, 685, 770, 802
SseBI	AGGCCT	1 cut(s)	518
SspMI	CTAG	1 cut(s)	18
StuI	AGGCCT	1 cut(s)	518
TaaI	ACNGT	1 cut(s)	623
TaqI	TCGA	5 cut(s)	497, 503, 615, 630, 761
TasI	AATT	9 cut(s)	356, 466, 487, 493, 499, 505, 685, 770, 802
TfiI	GAWTC	3 cut(s)	120, 653, 718
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TscAI	CASTG	2 cut(s)	30, 543
TseFI	GTSAC	4 cut(s)	25, 239, 659, 701
TseI	GCWGC	1 cut(s)	57
Tsp45I	GTSAC	4 cut(s)	25, 239, 659, 701
TspDTI	ATGAA	2 cut(s)	225, 366
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	2 cut(s)	30, 543
VpaK11BI	GGWCC	3 cut(s)	163, 406, 587
XagI	CCTNNNNNAGG	1 cut(s)	523
XapI	RAATTY	6 cut(s)	356, 487, 499, 505, 685, 770
XbaI	TCTAGA	1 cut(s)	17
XceI	RCATGY	2 cut(s)	573, 711
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.