Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010787

Physical Location & Seq

Genomic Coordinates Forward (+)

27909524 .. 27910977

Gene Structure 1454 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g25040.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCGGATTCTCAACCATCCCCAACTCATAAAAACTACTCAAAAAGCCCATCCTTCTTCGACTCTCCAAGATTCAGAGGCTTCGCGATAAAGGGCAGTTTCGAAACCGATTCAAATTTGATCAGCCCAACTTCAATTCTTGACACCACCAAGCCATTCCCCTTCGGAAGAAACCCGTTTTCGGGTGACCAAATCCAACCCAAAACCCCAAAAACTCAACCCGGGAACAAACCCTTTTGGGAGAAATCTGAGGCCAAAGGGATTGGCCTTGCTCTGGTTCAAACACTCAAAGATGAAAACTTGGAAGACAAAAATTCAAAAACCAGTAACCGTAAGGTCCTGTTTGGCACTAAGCTCAGAGTTCAAATCCCCAAGACTTTGAATTCCCAGTTTTCAGAAACTGGGTCTGTTAACTCTGGCATCCAAACAGAGAACCCAAATTCGGGTTCGAATTCGGGTGGTTGTGTGAGCGAGAGAAGTGAAATGGAGCTTTCTGAGGATTATACTTGTGTGATTTCTCGTGGGCCGAAGCCGAGAACGACTCACATATTTGATAACTGCATTGTGGAAAGTTACCATACTATGTCGGATCAGTCGAGCTCCGGTTCTGAGAATTTTCTTAGCTTTTGTTACACATGCAGGAAGAATCTTGAACAGAAGATTGACATCTACATTTACAGAGGTGAGAAGGCGTTTTGCAGTCAAGAATGCCGGTACCAAGAAATGCTCTTGGATGAAGTTGGGAACACAGAACTTGATGATACATTTAGGAGTTGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000932 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0010162 GO:0010431 GO:0010494 GO:0021700 GO:0022414 GO:0022611 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033993 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071695 GO:0097305 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

261

Amino Acids

29.11

Weight (kDa)

6.01

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63210
fragaria_vesca	FvH4_2g23270 FvH4_2g23270 FvH4_2g23270
malus_domestica	MD03G1262000.v1.1 MD11G1282700.v1.1
prunus_persica	Prupe.8G238300_v2.0.a1
pyrus_communis	pycom11g25040
rosa_chinensis	RchiOBHm_Chr6g0290641
rosa_laevigata	RLG00000012188
rosa_multiflora	Rmu_sc0006791.1_g000009
rosa_roxburghii	Rroxscaffold_7G00176850
rosa_rugosa	Rorug06G0213800 Rorug06G0213900 Rorug06G0213900 Rorug06G0214000
rosa_samantha	Rh6AG324400 Rh6BG331900 Rh6DG325100
rosa_wichuraiana	Rw6G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	714
AccB1I	GGYRCC	1 cut(s)	714
AccII	CGCG	1 cut(s)	86
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	597
AcsI	RAATTY	6 cut(s)	115, 313, 382, 439, 451, 613
AfaI	GTAC	1 cut(s)	716
AfiI	CCNNNNNNNGG	5 cut(s)	181, 182, 274, 442, 443
AgsI	TTSAA	7 cut(s)	114, 135, 281, 318, 365, 382, 653
AjuI	GAANNNNNNNTTGG	2 cut(s)	430, 462
AluBI	AGCT	4 cut(s)	355, 490, 600, 624
AluI	AGCT	4 cut(s)	355, 490, 600, 624
Alw21I	GWGCWC	1 cut(s)	602
AlwI	GGATC	1 cut(s)	597
AlwNI	CAGNNNCTG	1 cut(s)	401
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	3 cut(s)	252, 265, 524
ApoI	RAATTY	6 cut(s)	115, 313, 382, 439, 451, 613
Asp718I	GGTACC	1 cut(s)	714
AspS9I	GGNCC	2 cut(s)	337, 524
AsuC2I	CCSGG	2 cut(s)	222, 223
AsuHPI	GGTGA	2 cut(s)	197, 695
AsuII	TTCGAA	2 cut(s)	102, 449
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	714
BanII	GRGCYC	1 cut(s)	602
BauI	CACGAG	1 cut(s)	519
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	602
BccI	CCATC	2 cut(s)	25, 58
BclI	TGATCA	1 cut(s)	120
BcnI	CCSGG	2 cut(s)	222, 223
Bme1390I	CCNGG	2 cut(s)	222, 223
Bme18I	GGWCC	1 cut(s)	337
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	2 cut(s)	337, 524
BmiI	GGNNCC	1 cut(s)	716
BmrFI	CCNGG	2 cut(s)	222, 223
BmrI	ACTGGG	2 cut(s)	382, 411
BmsI	GCATC	1 cut(s)	429
BmuI	ACTGGG	2 cut(s)	382, 411
BpiI	GAAGAC	1 cut(s)	312
BplI	GAGNNNNNCTC	2 cut(s)	526, 558
Bpu14I	TTCGAA	2 cut(s)	102, 449
BpuMI	CCSGG	2 cut(s)	222, 223
BsaBI	GATNNNNATC	1 cut(s)	665
BsaJI	CCNNGG	1 cut(s)	221
BsaWI	WCCGGW	1 cut(s)	602
Bsc4I	CCNNNNNNNGG	5 cut(s)	181, 182, 274, 442, 443
Bse118I	RCCGGY	1 cut(s)	711
Bse1I	ACTGG	3 cut(s)	324, 388, 406
Bse8I	GATNNNNATC	1 cut(s)	665
BseDI	CCNNGG	1 cut(s)	221
BseGI	GGATG	4 cut(s)	17, 50, 420, 739
BseJI	GATNNNNATC	1 cut(s)	665
BseLI	CCNNNNNNNGG	5 cut(s)	181, 182, 274, 442, 443
BseMII	CTCAG	4 cut(s)	240, 370, 486, 600
BseNI	ACTGG	3 cut(s)	324, 388, 406
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	3 cut(s)	254, 267, 526
BshNI	GGYRCC	1 cut(s)	714
BsiHKAI	GWGCWC	1 cut(s)	602
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	3 cut(s)	222, 603, 712
BslI	CCNNNNNNNGG	5 cut(s)	181, 182, 274, 442, 443
BsmI	GAATGC	1 cut(s)	713
BsnI	GGCC	3 cut(s)	254, 267, 526
BsoBI	CYCGRG	1 cut(s)	221
Bsp119I	TTCGAA	2 cut(s)	102, 449
Bsp1286I	GDGCHC	1 cut(s)	602
Bsp143I	GATC	2 cut(s)	120, 589
Bsp68I	TCGCGA	1 cut(s)	86
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	3 cut(s)	254, 267, 526
BspCNI	CTCAG	4 cut(s)	241, 369, 487, 601
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	1 cut(s)	716
BspPI	GGATC	1 cut(s)	597
BspT104I	TTCGAA	2 cut(s)	102, 449
BspT107I	GGYRCC	1 cut(s)	714
BsrFI	RCCGGY	1 cut(s)	711
BsrI	ACTGG	3 cut(s)	324, 388, 406
BssAI	RCCGGY	1 cut(s)	711
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	2 cut(s)	120, 589
BssSI	CACGAG	1 cut(s)	519
Bst2BI	CACGAG	1 cut(s)	519
Bst4CI	ACNGT	1 cut(s)	332
BstBI	TTCGAA	2 cut(s)	102, 449
BstDEI	CTNAG	6 cut(s)	249, 351, 356, 495, 609, 620
BstEII	GGTNACC	1 cut(s)	185
BstF5I	GGATG	4 cut(s)	17, 50, 420, 739
BstFNI	CGCG	1 cut(s)	86
BstKTI	GATC	2 cut(s)	123, 592
BstMBI	GATC	2 cut(s)	120, 589
BstNSI	RCATGY	1 cut(s)	639
BstPI	GGTNACC	1 cut(s)	185
BstSCI	CCNGG	2 cut(s)	220, 221
BstUI	CGCG	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	312
BsuRI	GGCC	3 cut(s)	254, 267, 526
BtsCI	GGATG	4 cut(s)	17, 50, 420, 739
BtuMI	TCGCGA	1 cut(s)	86
CaiI	CAGNNNCTG	1 cut(s)	401
Cfr10I	RCCGGY	1 cut(s)	711
Cfr13I	GGNCC	2 cut(s)	337, 524
Cfr9I	CCCGGG	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	715
CviAII	CATG	1 cut(s)	636
CviQI	GTAC	1 cut(s)	715
DdeI	CTNAG	6 cut(s)	249, 351, 356, 495, 609, 620
DpnI	GATC	2 cut(s)	122, 591
DpnII	GATC	2 cut(s)	120, 589
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	600
Eco24I	GRGCYC	1 cut(s)	602
Eco47I	GGWCC	1 cut(s)	337
Eco53kI	GAGCTC	1 cut(s)	600
Eco88I	CYCGRG	1 cut(s)	221
Eco91I	GGTNACC	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	600
EcoO109I	RGGNCCY	1 cut(s)	337
EcoO65I	GGTNACC	1 cut(s)	185
EcoRI	GAATTC	2 cut(s)	382, 451
EcoT38I	GRGCYC	1 cut(s)	602
FaeI	CATG	1 cut(s)	639
FaiI	YATR	6 cut(s)	30, 504, 548, 579, 584, 637
FatI	CATG	1 cut(s)	635
FbaI	TGATCA	1 cut(s)	120
FokI	GGATG	4 cut(s)	4, 37, 407, 746
FriOI	GRGCYC	1 cut(s)	602
HaeIII	GGCC	3 cut(s)	254, 267, 526
HapII	CCGG	3 cut(s)	222, 603, 712
Hin1II	CATG	1 cut(s)	639
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	6 cut(s)	8, 62, 72, 110, 541, 646
HpaI	GTTAAC	1 cut(s)	412
HpaII	CCGG	3 cut(s)	222, 603, 712
HphI	GGTGA	2 cut(s)	197, 695
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	8 cut(s)	77, 167, 250, 359, 397, 496, 589, 610
Hpy188III	TCNNGA	5 cut(s)	85, 140, 650, 704, 780
Hpy8I	GTNNAC	1 cut(s)	412
HpyAV	CCTTC	3 cut(s)	64, 172, 682
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	3 cut(s)	561, 639, 699
HpyF3I	CTNAG	6 cut(s)	249, 351, 356, 495, 609, 620
Hsp92II	CATG	1 cut(s)	639
KpnI	GGTACC	1 cut(s)	718
Ksp22I	TGATCA	1 cut(s)	120
KspAI	GTTAAC	1 cut(s)	412
Kzo9I	GATC	2 cut(s)	120, 589
LmnI	GCTCC	2 cut(s)	487, 605
LweI	GCATC	1 cut(s)	429
MaeIII	GTNAC	4 cut(s)	185, 326, 572, 629
MalI	GATC	2 cut(s)	122, 591
MboI	GATC	2 cut(s)	120, 589
MboII	GAAGA	5 cut(s)	49, 180, 317, 655, 670
MhlI	GDGCHC	1 cut(s)	602
MluCI	AATT	7 cut(s)	115, 135, 313, 382, 439, 451, 613
MlyI	GAGTC	2 cut(s)	56, 535
MmeI	TCCRAC	2 cut(s)	220, 567
MnlI	CCTC	4 cut(s)	71, 244, 490, 674
MseI	TTAA	1 cut(s)	411
MspI	CCGG	3 cut(s)	222, 603, 712
MspR9I	CCNGG	2 cut(s)	222, 223
Mva1269I	GAATGC	1 cut(s)	713
MvnI	CGCG	1 cut(s)	86
NciI	CCSGG	2 cut(s)	222, 223
NdeII	GATC	2 cut(s)	120, 589
NlaIII	CATG	1 cut(s)	639
NlaIV	GGNNCC	1 cut(s)	716
NmeAIII	GCCGAG	1 cut(s)	558
NmuCI	GTSAC	1 cut(s)	185
NruI	TCGCGA	1 cut(s)	86
NspI	RCATGY	1 cut(s)	639
NspV	TTCGAA	2 cut(s)	102, 449
PcsI	WCGNNNNNNNCGW	1 cut(s)	593
PctI	GAATGC	1 cut(s)	713
PfeI	GAWTC	4 cut(s)	8, 72, 110, 646
PleI	GAGTC	2 cut(s)	56, 535
PpsI	GAGTC	2 cut(s)	56, 535
PpuMI	RGGWCCY	1 cut(s)	337
Psp124BI	GAGCTC	1 cut(s)	602
Psp5II	RGGWCCY	1 cut(s)	337
PspEI	GGTNACC	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	716
PspPI	GGNCC	2 cut(s)	337, 524
PspPPI	RGGWCCY	1 cut(s)	337
PstNI	CAGNNNCTG	1 cut(s)	401
RruI	TCGCGA	1 cut(s)	86
RsaI	GTAC	1 cut(s)	716
RsaNI	GTAC	1 cut(s)	715
SacI	GAGCTC	1 cut(s)	602
SaqAI	TTAA	1 cut(s)	411
Sau3AI	GATC	2 cut(s)	120, 589
Sau96I	GGNCC	2 cut(s)	337, 524
SchI	GAGTC	2 cut(s)	56, 535
ScrFI	CCNGG	2 cut(s)	222, 223
SduI	GDGCHC	1 cut(s)	602
SetI	ASST	6 cut(s)	339, 357, 492, 602, 626, 685
SfaNI	GCATC	1 cut(s)	429
SfuI	TTCGAA	2 cut(s)	102, 449
SinI	GGWCC	1 cut(s)	337
SmaI	CCCGGG	1 cut(s)	223
Sse9I	AATT	7 cut(s)	115, 135, 313, 382, 439, 451, 613
SsiI	CCGC	1 cut(s)	5
SstI	GAGCTC	1 cut(s)	602
StyD4I	CCNGG	2 cut(s)	220, 221
TaaI	ACNGT	1 cut(s)	332
TaqI	TCGA	4 cut(s)	60, 102, 449, 596
TasI	AATT	7 cut(s)	115, 135, 313, 382, 439, 451, 613
TfiI	GAWTC	4 cut(s)	8, 72, 110, 646
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseFI	GTSAC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	2 cut(s)	309, 750
TspMI	CCCGGG	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	337
XapI	RAATTY	6 cut(s)	115, 313, 382, 439, 451, 613
XceI	RCATGY	1 cut(s)	639
XmaI	CCCGGG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.