Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010787

Physical Location & Seq

Genomic Coordinates Reverse (-)

16086584 .. 16087601

Gene Structure 1018 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012188

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCTGATCACAGCTCTCAACAATCCCAAAACTACTACACAACCAAGATCCCATCTTTCTTTGGTTCTCCAAGATTCAGAGCCTTCTTCACAATAAAGGGTAGCCACTCTGAAACGGACCAAAACCCTATGATAAGTCCCACTTCAATCCTTGACACCAAGCTTTCACTCCCATTTGGAAACCATTTTTCATGTGACAAAAACCAACCCAGTTTAATCCCAAAGGCTTTGTCAGGGAACAAACGCTCATGGGACAACTCAGAGGCCAAAGGCATTGGCCTTGCTCTTGTTGACACACTCATTGATGAAAAATCTGAAGTGAATAGTAGTAGTGCTTGTCAGCAAAGTAATGGGAATAAGGTCCTATTTGGAACCAAGCTTAGAGTTCAAATACCTCCCTATCCGGCAAAAGGATCTTCTAATTCCGTCATCCAAACAGAGAACTCTAATTCGAATTCGAATTCTCCTCAGGCCTTTTCAAGGTGTGTCTCAGTGAGGGAAATGGAGCTTTCTGAGGACTATACATGTGTGATATCTCGTGGACCTAATCCAAGAACAACTCATATATTCGACAACTGTATTGTCGAAAGCTACAATACCTTATCGGATTCAGGTTACTTCTCCAAATCTGCTCCGGAGAATTTCCTTAGCTTCTGTCACACATGCAAGAAGAATCTTGATCAGAAGAATGACATTTACATCTACAGAGGTGACAAGGCCTTTTGCAGCCGCGAGTGCCGCTACCAAGAAATGCTCCTAGACGAGAAAGCTGGAAACCCAGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000932 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0010162 GO:0010431 GO:0010494 GO:0021700 GO:0022414 GO:0022611 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033993 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071695 GO:0097305 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

263

Amino Acids

29.26

Weight (kDa)

6.94

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-FLZ	PF04570	209 - 256	2.1e-21	zinc-finger of the FCS-type, C2-C2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63210
fragaria_vesca	FvH4_2g23270 FvH4_2g23270 FvH4_2g23270
malus_domestica	MD03G1262000.v1.1 MD11G1282700.v1.1
prunus_persica	Prupe.8G238300_v2.0.a1
pyrus_communis	pycom11g25040
rosa_chinensis	RchiOBHm_Chr6g0290641
rosa_laevigata	RLG00000012188
rosa_multiflora	Rmu_sc0006791.1_g000009
rosa_roxburghii	Rroxscaffold_7G00176850
rosa_rugosa	Rorug06G0213800 Rorug06G0213900 Rorug06G0213900 Rorug06G0214000
rosa_samantha	Rh6AG324400 Rh6BG331900 Rh6DG325100
rosa_wichuraiana	Rw6G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	732
AccIII	TCCGGA	1 cut(s)	634
AciI	CCGC	2 cut(s)	730, 739
AclWI	GGATC	2 cut(s)	43, 421
AcsI	RAATTY	4 cut(s)	454, 460, 640, 782
AcuI	CTGAAG	1 cut(s)	336
AfiI	CCNNNNNNNGG	2 cut(s)	410, 480
AflIII	ACRYGT	1 cut(s)	524
AgsI	TTSAA	3 cut(s)	147, 389, 480
AluBI	AGCT	7 cut(s)	15, 163, 379, 508, 591, 651, 770
AluI	AGCT	7 cut(s)	15, 163, 379, 508, 591, 651, 770
Alw26I	GTCTC	1 cut(s)	493
AlwI	GGATC	2 cut(s)	43, 421
Aor13HI	TCCGGA	1 cut(s)	634
AoxI	GGCC	4 cut(s)	264, 277, 471, 717
ApeKI	GCWGC	1 cut(s)	726
ApoI	RAATTY	4 cut(s)	454, 460, 640, 782
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
AspS9I	GGNCC	3 cut(s)	118, 361, 542
AsuHPI	GGTGA	1 cut(s)	722
AsuII	TTCGAA	2 cut(s)	452, 458
AvaII	GGWCC	3 cut(s)	118, 361, 542
AxyI	CCTNAGG	1 cut(s)	468
BauI	CACGAG	1 cut(s)	537
BbvI	GCAGC	1 cut(s)	738
BccI	CCATC	1 cut(s)	61
BclI	TGATCA	2 cut(s)	7, 679
BcoDI	GTCTC	1 cut(s)	493
BfaI	CTAG	1 cut(s)	758
BfmI	CTRYAG	1 cut(s)	703
BisI	GCNGC	3 cut(s)	727, 730, 739
BlsI	GCNGC	3 cut(s)	728, 731, 740
Bme18I	GGWCC	3 cut(s)	118, 361, 542
BmgT120I	GGNCC	3 cut(s)	118, 361, 542
BmiI	GGNNCC	1 cut(s)	373
BmrI	ACTGGG	1 cut(s)	204
BmuI	ACTGGG	1 cut(s)	204
Bpu10I	CCTNAGC	1 cut(s)	647
Bpu14I	TTCGAA	2 cut(s)	452, 458
BsaWI	WCCGGW	1 cut(s)	634
Bsc4I	CCNNNNNNNGG	2 cut(s)	410, 480
Bse1I	ACTGG	1 cut(s)	210
Bse21I	CCTNAGG	1 cut(s)	468
BseAI	TCCGGA	1 cut(s)	634
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	2 cut(s)	410, 480
BseMII	CTCAG	4 cut(s)	273, 482, 504, 504
BseNI	ACTGG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	456
BseXI	GCAGC	1 cut(s)	738
Bsh1236I	CGCG	1 cut(s)	732
BshFI	GGCC	4 cut(s)	266, 279, 473, 719
BsiSI	CCGG	2 cut(s)	404, 635
BslFI	GGGAC	2 cut(s)	123, 266
BslI	CCNNNNNNNGG	2 cut(s)	410, 480
BsmAI	GTCTC	1 cut(s)	493
BsmFI	GGGAC	2 cut(s)	123, 266
BsnI	GGCC	4 cut(s)	266, 279, 473, 719
Bsp119I	TTCGAA	2 cut(s)	452, 458
Bsp13I	TCCGGA	1 cut(s)	634
Bsp143I	GATC	4 cut(s)	7, 48, 413, 679
BspACI	CCGC	2 cut(s)	730, 739
BspANI	GGCC	4 cut(s)	266, 279, 473, 719
BspCNI	CTCAG	4 cut(s)	272, 481, 503, 505
BspEI	TCCGGA	1 cut(s)	634
BspFNI	CGCG	1 cut(s)	732
BspLI	GGNNCC	1 cut(s)	373
BspPI	GGATC	2 cut(s)	43, 421
BspT104I	TTCGAA	2 cut(s)	452, 458
BsrI	ACTGG	1 cut(s)	210
BssMI	GATC	4 cut(s)	7, 48, 413, 679
BssSI	CACGAG	1 cut(s)	537
Bst2BI	CACGAG	1 cut(s)	537
Bst4CI	ACNGT	1 cut(s)	578
BstBI	TTCGAA	2 cut(s)	452, 458
BstDEI	CTNAG	6 cut(s)	259, 380, 468, 490, 513, 647
BstENI	CCTNNNNNAGG	1 cut(s)	478
BstF5I	GGATG	1 cut(s)	429
BstFNI	CGCG	1 cut(s)	732
BstKTI	GATC	4 cut(s)	10, 51, 416, 682
BstMAI	GTCTC	1 cut(s)	493
BstMBI	GATC	4 cut(s)	7, 48, 413, 679
BstMWI	GCNNNNNNNGC	2 cut(s)	735, 738
BstNSI	RCATGY	2 cut(s)	528, 666
BstSFI	CTRYAG	1 cut(s)	703
BstUI	CGCG	1 cut(s)	732
BstV1I	GCAGC	1 cut(s)	738
BstX2I	RGATCY	2 cut(s)	48, 413
BstYI	RGATCY	2 cut(s)	48, 413
Bsu36I	CCTNAGG	1 cut(s)	468
BsuRI	GGCC	4 cut(s)	266, 279, 473, 719
BtsCI	GGATG	1 cut(s)	429
BtsIMutI	CAGTG	1 cut(s)	498
Cfr13I	GGNCC	3 cut(s)	118, 361, 542
CviAII	CATG	4 cut(s)	192, 249, 525, 663
DdeI	CTNAG	6 cut(s)	259, 380, 468, 490, 513, 647
DpnI	GATC	4 cut(s)	9, 50, 415, 681
DpnII	GATC	4 cut(s)	7, 48, 413, 679
Eco147I	AGGCCT	2 cut(s)	473, 719
Eco32I	GATATC	1 cut(s)	534
Eco47I	GGWCC	3 cut(s)	118, 361, 542
Eco57I	CTGAAG	1 cut(s)	336
Eco81I	CCTNAGG	1 cut(s)	468
EcoNI	CCTNNNNNAGG	1 cut(s)	478
EcoO109I	RGGNCCY	1 cut(s)	361
EcoRI	GAATTC	2 cut(s)	454, 460
EcoRV	GATATC	1 cut(s)	534
FaeI	CATG	4 cut(s)	195, 252, 528, 666
FaiI	YATR	8 cut(s)	131, 193, 250, 522, 526, 564, 566, 664
FalI	AAGNNNNNCTT	2 cut(s)	127, 159
FaqI	GGGAC	2 cut(s)	123, 266
FatI	CATG	4 cut(s)	191, 248, 524, 662
FbaI	TGATCA	2 cut(s)	7, 679
Fnu4HI	GCNGC	3 cut(s)	727, 730, 739
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	3 cut(s)	727, 730, 739
FspBI	CTAG	1 cut(s)	758
GluI	GCNGC	3 cut(s)	727, 730, 739
HaeIII	GGCC	4 cut(s)	266, 279, 473, 719
HapII	CCGG	2 cut(s)	404, 635
Hin1II	CATG	4 cut(s)	195, 252, 528, 666
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HindIII	AAGCTT	2 cut(s)	161, 377
HinfI	GANTC	3 cut(s)	75, 608, 673
HpaII	CCGG	2 cut(s)	404, 635
HphI	GGTGA	1 cut(s)	722
Hpy166II	GTNNAC	2 cut(s)	292, 542
Hpy188I	TCNGA	7 cut(s)	80, 112, 262, 316, 514, 607, 684
Hpy188III	TCNNGA	2 cut(s)	635, 677
Hpy8I	GTNNAC	2 cut(s)	292, 542
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	578
HpyCH4V	TGCA	2 cut(s)	666, 726
HpyF10VI	GCNNNNNNNGC	2 cut(s)	735, 738
HpyF3I	CTNAG	6 cut(s)	259, 380, 468, 490, 513, 647
Hsp92II	CATG	4 cut(s)	195, 252, 528, 666
Kpn2I	TCCGGA	1 cut(s)	634
Ksp22I	TGATCA	2 cut(s)	7, 679
Kzo9I	GATC	4 cut(s)	7, 48, 413, 679
LmnI	GCTCC	3 cut(s)	505, 637, 759
LpnPI	CCDG	7 cut(s)	219, 223, 417, 455, 597, 648, 756
Lsp1109I	GCAGC	1 cut(s)	738
MaeI	CTAG	1 cut(s)	758
MaeIII	GTNAC	4 cut(s)	194, 614, 656, 710
MalI	GATC	4 cut(s)	9, 50, 415, 681
MboI	GATC	4 cut(s)	7, 48, 413, 679
MboII	GAAGA	4 cut(s)	79, 408, 682, 697
MflI	RGATCY	2 cut(s)	48, 413
MluCI	AATT	6 cut(s)	421, 448, 454, 460, 640, 782
MnlI	CCTC	6 cut(s)	256, 405, 477, 489, 508, 701
MroI	TCCGGA	1 cut(s)	634
MseI	TTAA	1 cut(s)	215
MspI	CCGG	2 cut(s)	404, 635
MvnI	CGCG	1 cut(s)	732
MwoI	GCNNNNNNNGC	2 cut(s)	735, 738
NdeII	GATC	4 cut(s)	7, 48, 413, 679
NlaIII	CATG	4 cut(s)	195, 252, 528, 666
NlaIV	GGNNCC	1 cut(s)	373
NmuCI	GTSAC	3 cut(s)	194, 656, 710
NspI	RCATGY	2 cut(s)	528, 666
NspV	TTCGAA	2 cut(s)	452, 458
PceI	AGGCCT	2 cut(s)	473, 719
PciI	ACATGT	1 cut(s)	524
PfeI	GAWTC	3 cut(s)	75, 608, 673
PkrI	GCNGC	3 cut(s)	728, 731, 740
PpuMI	RGGWCCY	1 cut(s)	361
PscI	ACATGT	1 cut(s)	524
Psp5II	RGGWCCY	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	373
PspPI	GGNCC	3 cut(s)	118, 361, 542
PspPPI	RGGWCCY	1 cut(s)	361
PsuI	RGATCY	2 cut(s)	48, 413
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	3 cut(s)	727, 730, 739
Sau3AI	GATC	4 cut(s)	7, 48, 413, 679
Sau96I	GGNCC	3 cut(s)	118, 361, 542
SfcI	CTRYAG	1 cut(s)	703
SfuI	TTCGAA	2 cut(s)	452, 458
SinI	GGWCC	3 cut(s)	118, 361, 542
Sse9I	AATT	6 cut(s)	421, 448, 454, 460, 640, 782
SseBI	AGGCCT	2 cut(s)	473, 719
SsiI	CCGC	2 cut(s)	730, 739
SspMI	CTAG	1 cut(s)	758
StuI	AGGCCT	2 cut(s)	473, 719
TaaI	ACNGT	1 cut(s)	578
TaqI	TCGA	4 cut(s)	452, 458, 570, 585
TasI	AATT	6 cut(s)	421, 448, 454, 460, 640, 782
TauI	GCSGC	2 cut(s)	732, 741
TfiI	GAWTC	3 cut(s)	75, 608, 673
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	3 cut(s)	194, 656, 710
TseI	GCWGC	1 cut(s)	726
Tsp45I	GTSAC	3 cut(s)	194, 656, 710
TspDTI	ATGAA	2 cut(s)	180, 321
TspGWI	ACGGA	2 cut(s)	131, 415
TspRI	CASTG	1 cut(s)	498
VpaK11BI	GGWCC	3 cut(s)	118, 361, 542
XagI	CCTNNNNNAGG	1 cut(s)	478
XapI	RAATTY	4 cut(s)	454, 460, 640, 782
XceI	RCATGY	2 cut(s)	528, 666
XspI	CTAG	1 cut(s)	758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.