Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010787

Physical Location & Seq

Genomic Coordinates Reverse (-)

16471998 .. 16474264

Gene Structure 2267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00176850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGCTGAGGAATAGATCTAGAGCAGTGACCAGCAAGCAAGCTCTAATGGCTGATCACAGCTCTCAACAATCCCAAAACTACTACACAACCAAGATCCCATCTTTCTTTGGTTCTCCAAGATTCAGAGCCTTTTTCACAATAAAGGGTAGCCACTCTGAAACGGACCAAAACCCTATGATAAGTCCCACTTCAATCCTTGACAACAAGCTTTCACTCCCATTTGGAAACCATTTTTCATGTGACAAAAACCAACCCAGTTTAATCCCAAAGGCTTTGTCAGGGAACAAACGCTCATGGGACAACTCAGAGGCCAAAGGCATTGGCCTTGCTCTTGTTGACACACTCATTGATGAAAAATCTGAAGTGAATAGTACTAGTGCTTGTAAGCAAAGTAATGGGAATAAGGTCCTATTTGGAACTAAGCTTAGAGTTCAAATACCTCCCTATCCGGCAAAAGGATCTTCTAATTCCGGCATCCAAACAGAGAATTCTAATTCGAATTCGAATTCTCCTCAGGCCTTTTCAAGTTGTGTCTCAGTGAGGGAAATGGAGCTTTCTGAGGACTATACATGTGTGATATCTCGTGGACCTAATCCAAGAACAACTCATATATTCGACAACTGTATCGTCGAAAGCTACTACACCTTATCGGATTCAGGTCACTTCTCCAAATCTGCTCCAGAGAATTTCCTTAGCTTCTGTCACACATGCAAGAAGAATCTTGAGCAGAAGATTGACATTTACATCTACAGAGGTGACAAGGCCTTTTGCAGCCGCGAGTGCCGCTACCAAGAAATGCTCCTAGACGAGAAAGCTGGAAACCCAGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000932 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0010162 GO:0010431 GO:0010494 GO:0021700 GO:0022414 GO:0022611 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033993 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071695 GO:0097305 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

277

Amino Acids

30.93

Weight (kDa)

8.5

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-FLZ	PF04570	224 - 271	5.4e-21	zinc-finger of the FCS-type, C2-C2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63210
fragaria_vesca	FvH4_2g23270 FvH4_2g23270 FvH4_2g23270
malus_domestica	MD03G1262000.v1.1 MD11G1282700.v1.1
prunus_persica	Prupe.8G238300_v2.0.a1
pyrus_communis	pycom11g25040
rosa_chinensis	RchiOBHm_Chr6g0290641
rosa_laevigata	RLG00000012188
rosa_multiflora	Rmu_sc0006791.1_g000009
rosa_roxburghii	Rroxscaffold_7G00176850
rosa_rugosa	Rorug06G0213800 Rorug06G0213900 Rorug06G0213900 Rorug06G0214000
rosa_samantha	Rh6AG324400 Rh6BG331900 Rh6DG325100
rosa_wichuraiana	Rw6G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	777
AciI	CCGC	2 cut(s)	775, 784
AclWI	GGATC	2 cut(s)	88, 466
AcsI	RAATTY	5 cut(s)	487, 499, 505, 685, 827
AcuI	CTGAAG	1 cut(s)	381
AfaI	GTAC	1 cut(s)	373
AfiI	CCNNNNNNNGG	1 cut(s)	455
AflIII	ACRYGT	1 cut(s)	569
AgsI	TTSAA	3 cut(s)	192, 434, 525
AhlI	ACTAGT	1 cut(s)	374
AluBI	AGCT	8 cut(s)	41, 60, 208, 424, 553, 636, 696, 815
AluI	AGCT	8 cut(s)	41, 60, 208, 424, 553, 636, 696, 815
Alw26I	GTCTC	1 cut(s)	538
AlwI	GGATC	2 cut(s)	88, 466
AoxI	GGCC	4 cut(s)	309, 322, 516, 762
ApeKI	GCWGC	1 cut(s)	771
ApoI	RAATTY	5 cut(s)	487, 499, 505, 685, 827
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AspS9I	GGNCC	3 cut(s)	163, 406, 587
AsuHPI	GGTGA	1 cut(s)	767
AsuII	TTCGAA	2 cut(s)	497, 503
AvaII	GGWCC	3 cut(s)	163, 406, 587
AxyI	CCTNAGG	1 cut(s)	513
BaeI	ACNNNNGTAYC	2 cut(s)	607, 640
BauI	CACGAG	1 cut(s)	582
BbvCI	CCTCAGC	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	783
BccI	CCATC	1 cut(s)	106
BclI	TGATCA	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	538
BcuI	ACTAGT	1 cut(s)	374
BfaI	CTAG	3 cut(s)	18, 375, 803
BfmI	CTRYAG	1 cut(s)	748
BglII	AGATCT	1 cut(s)	14
BisI	GCNGC	3 cut(s)	772, 775, 784
BlsI	GCNGC	3 cut(s)	773, 776, 785
BmcAI	AGTACT	1 cut(s)	373
Bme18I	GGWCC	3 cut(s)	163, 406, 587
BmgT120I	GGNCC	3 cut(s)	163, 406, 587
BmrI	ACTGGG	1 cut(s)	249
BmsI	GCATC	1 cut(s)	483
BmuI	ACTGGG	1 cut(s)	249
BpmI	CTGGAG	1 cut(s)	663
Bpu10I	CCTNAGC	2 cut(s)	5, 692
Bpu14I	TTCGAA	2 cut(s)	497, 503
BpuEI	CTTGAG	1 cut(s)	743
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse1I	ACTGG	1 cut(s)	255
Bse21I	CCTNAGG	1 cut(s)	513
BseGI	GGATG	1 cut(s)	474
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMII	CTCAG	4 cut(s)	318, 527, 549, 549
BseNI	ACTGG	1 cut(s)	255
BseRI	GAGGAG	1 cut(s)	501
BseXI	GCAGC	1 cut(s)	783
Bsh1236I	CGCG	1 cut(s)	777
BshFI	GGCC	4 cut(s)	311, 324, 518, 764
BsiSI	CCGG	2 cut(s)	449, 471
BslFI	GGGAC	2 cut(s)	168, 311
BslI	CCNNNNNNNGG	1 cut(s)	455
BsmAI	GTCTC	1 cut(s)	538
BsmFI	GGGAC	2 cut(s)	168, 311
BsnI	GGCC	4 cut(s)	311, 324, 518, 764
Bsp119I	TTCGAA	2 cut(s)	497, 503
Bsp143I	GATC	4 cut(s)	14, 52, 93, 458
BspACI	CCGC	2 cut(s)	775, 784
BspANI	GGCC	4 cut(s)	311, 324, 518, 764
BspCNI	CTCAG	4 cut(s)	317, 526, 548, 550
BspFNI	CGCG	1 cut(s)	777
BspPI	GGATC	2 cut(s)	88, 466
BspT104I	TTCGAA	2 cut(s)	497, 503
BsrI	ACTGG	1 cut(s)	255
BssMI	GATC	4 cut(s)	14, 52, 93, 458
BssSI	CACGAG	1 cut(s)	582
Bst2BI	CACGAG	1 cut(s)	582
Bst4CI	ACNGT	1 cut(s)	623
BstBI	TTCGAA	2 cut(s)	497, 503
BstC8I	GCNNGC	2 cut(s)	35, 39
BstDEI	CTNAG	8 cut(s)	5, 304, 420, 425, 513, 535, 558, 692
BstF5I	GGATG	1 cut(s)	474
BstFNI	CGCG	1 cut(s)	777
BstKTI	GATC	4 cut(s)	17, 55, 96, 461
BstMAI	GTCTC	1 cut(s)	538
BstMBI	GATC	4 cut(s)	14, 52, 93, 458
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 780, 783
BstNSI	RCATGY	2 cut(s)	573, 711
BstSFI	CTRYAG	1 cut(s)	748
BstUI	CGCG	1 cut(s)	777
BstV1I	GCAGC	1 cut(s)	783
BstX2I	RGATCY	3 cut(s)	14, 93, 458
BstYI	RGATCY	3 cut(s)	14, 93, 458
Bsu36I	CCTNAGG	1 cut(s)	513
BsuRI	GGCC	4 cut(s)	311, 324, 518, 764
BtsCI	GGATG	1 cut(s)	474
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	2 cut(s)	30, 543
Cac8I	GCNNGC	2 cut(s)	35, 39
Cfr13I	GGNCC	3 cut(s)	163, 406, 587
Csp6I	GTAC	1 cut(s)	372
CviAII	CATG	4 cut(s)	237, 294, 570, 708
CviQI	GTAC	1 cut(s)	372
DdeI	CTNAG	8 cut(s)	5, 304, 420, 425, 513, 535, 558, 692
DpnI	GATC	4 cut(s)	16, 54, 95, 460
DpnII	GATC	4 cut(s)	14, 52, 93, 458
Eco147I	AGGCCT	2 cut(s)	518, 764
Eco32I	GATATC	1 cut(s)	579
Eco47I	GGWCC	3 cut(s)	163, 406, 587
Eco57I	CTGAAG	1 cut(s)	381
Eco81I	CCTNAGG	1 cut(s)	513
EcoO109I	RGGNCCY	1 cut(s)	406
EcoRI	GAATTC	3 cut(s)	487, 499, 505
EcoRV	GATATC	1 cut(s)	579
FaeI	CATG	4 cut(s)	240, 297, 573, 711
FaiI	YATR	8 cut(s)	176, 238, 295, 567, 571, 609, 611, 709
FalI	AAGNNNNNCTT	2 cut(s)	172, 204
FaqI	GGGAC	2 cut(s)	168, 311
FatI	CATG	4 cut(s)	236, 293, 569, 707
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	3 cut(s)	772, 775, 784
FokI	GGATG	1 cut(s)	461
Fsp4HI	GCNGC	3 cut(s)	772, 775, 784
FspBI	CTAG	3 cut(s)	18, 375, 803
GluI	GCNGC	3 cut(s)	772, 775, 784
GsuI	CTGGAG	1 cut(s)	663
HaeIII	GGCC	4 cut(s)	311, 324, 518, 764
HapII	CCGG	2 cut(s)	449, 471
Hin1II	CATG	4 cut(s)	240, 297, 573, 711
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	2 cut(s)	206, 422
HinfI	GANTC	3 cut(s)	120, 653, 718
HpaII	CCGG	2 cut(s)	449, 471
HphI	GGTGA	1 cut(s)	767
Hpy166II	GTNNAC	2 cut(s)	337, 587
Hpy188I	TCNGA	6 cut(s)	125, 157, 307, 361, 559, 652
Hpy188III	TCNNGA	3 cut(s)	18, 680, 722
Hpy8I	GTNNAC	2 cut(s)	337, 587
Hpy99I	CGWCG	1 cut(s)	632
HpyCH4III	ACNGT	1 cut(s)	623
HpyCH4V	TGCA	2 cut(s)	711, 771
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 780, 783
HpyF3I	CTNAG	8 cut(s)	5, 304, 420, 425, 513, 535, 558, 692
Hsp92II	CATG	4 cut(s)	240, 297, 573, 711
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	4 cut(s)	14, 52, 93, 458
LmnI	GCTCC	3 cut(s)	550, 682, 804
LpnPI	CCDG	9 cut(s)	43, 264, 268, 462, 484, 500, 642, 693, 801
Lsp1109I	GCAGC	1 cut(s)	783
LweI	GCATC	1 cut(s)	483
MaeI	CTAG	3 cut(s)	18, 375, 803
MaeIII	GTNAC	5 cut(s)	25, 239, 659, 701, 755
MalI	GATC	4 cut(s)	16, 54, 95, 460
MboI	GATC	4 cut(s)	14, 52, 93, 458
MboII	GAAGA	3 cut(s)	453, 727, 742
MflI	RGATCY	3 cut(s)	14, 93, 458
MluCI	AATT	7 cut(s)	466, 487, 493, 499, 505, 685, 827
MnlI	CCTC	6 cut(s)	301, 450, 522, 534, 553, 746
MseI	TTAA	1 cut(s)	260
MspI	CCGG	2 cut(s)	449, 471
MvnI	CGCG	1 cut(s)	777
MwoI	GCNNNNNNNGC	3 cut(s)	47, 780, 783
NdeII	GATC	4 cut(s)	14, 52, 93, 458
NlaIII	CATG	4 cut(s)	240, 297, 573, 711
NmuCI	GTSAC	5 cut(s)	25, 239, 659, 701, 755
NspI	RCATGY	2 cut(s)	573, 711
NspV	TTCGAA	2 cut(s)	497, 503
PceI	AGGCCT	2 cut(s)	518, 764
PciI	ACATGT	1 cut(s)	569
PfeI	GAWTC	3 cut(s)	120, 653, 718
PkrI	GCNGC	3 cut(s)	773, 776, 785
PpuMI	RGGWCCY	1 cut(s)	406
PscI	ACATGT	1 cut(s)	569
Psp5II	RGGWCCY	1 cut(s)	406
PspPI	GGNCC	3 cut(s)	163, 406, 587
PspPPI	RGGWCCY	1 cut(s)	406
PsuI	RGATCY	3 cut(s)	14, 93, 458
RsaI	GTAC	1 cut(s)	373
RsaNI	GTAC	1 cut(s)	372
SaqAI	TTAA	1 cut(s)	260
SatI	GCNGC	3 cut(s)	772, 775, 784
Sau3AI	GATC	4 cut(s)	14, 52, 93, 458
Sau96I	GGNCC	3 cut(s)	163, 406, 587
ScaI	AGTACT	1 cut(s)	373
SfaNI	GCATC	1 cut(s)	483
SfcI	CTRYAG	1 cut(s)	748
SfuI	TTCGAA	2 cut(s)	497, 503
SinI	GGWCC	3 cut(s)	163, 406, 587
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
SpeI	ACTAGT	1 cut(s)	374
Sse9I	AATT	7 cut(s)	466, 487, 493, 499, 505, 685, 827
SseBI	AGGCCT	2 cut(s)	518, 764
SsiI	CCGC	2 cut(s)	775, 784
SspMI	CTAG	3 cut(s)	18, 375, 803
StuI	AGGCCT	2 cut(s)	518, 764
TaaI	ACNGT	1 cut(s)	623
TaqI	TCGA	4 cut(s)	497, 503, 615, 630
TasI	AATT	7 cut(s)	466, 487, 493, 499, 505, 685, 827
TatI	WGTACW	1 cut(s)	371
TauI	GCSGC	2 cut(s)	777, 786
TfiI	GAWTC	3 cut(s)	120, 653, 718
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TscAI	CASTG	2 cut(s)	30, 543
TseFI	GTSAC	5 cut(s)	25, 239, 659, 701, 755
TseI	GCWGC	1 cut(s)	771
Tsp45I	GTSAC	5 cut(s)	25, 239, 659, 701, 755
TspDTI	ATGAA	2 cut(s)	225, 366
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	2 cut(s)	30, 543
VpaK11BI	GGWCC	3 cut(s)	163, 406, 587
XapI	RAATTY	5 cut(s)	487, 499, 505, 685, 827
XbaI	TCTAGA	1 cut(s)	17
XceI	RCATGY	2 cut(s)	573, 711
XspI	CTAG	3 cut(s)	18, 375, 803
ZrmI	AGTACT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.