AT4G00990

transcription factor jumonji (jmjC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002674
Physical Location & Seq
Forward (+)
426847 .. 431862
5016 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G00990.1

Sequence Viewer

Length: 2523 bp
ATGGAGAAAATGAGAGGGAAGCGAATCAGACCAAGAGATTCCGGCGAGTTAGTCGAAGATGGGAGATCTGAAAGCGAGCGTAAGACGAGGAAGAAAGAGAATGATGTTGTGAGCAAAGGAAGAATCGGAAGAGGAAGAGGAAGAGGAGAGGTTTCGAAGCGATCTATTGAAATAGACATTTCTAATCCCGAGAAGGATATTAAGCCTGACGGAAGCAGAAAGTGTTTGGGTTCGACGTGTCATCATTGTAAGATCTTGACGAGTGAGAGTGATCTTATCTTCTGTTCAAAGTGTAACAAGAAGTGTTATTGCTTTGACTGCATCAAGAGATCGTATTCAGAAAGAACACATGAGGAAGTTAGAGCTGCTTGTCCATTCTGTATGATGACTTGCATTTGCAGAGCTTGTTTGCGGTTGCCTTTGGTTATCAAGCCTCCAAGTGAAAAAGATACAGATGTCAAGCTTAAGCAGCTGCAGTATCTGTTAGTCAAAGTTCTCCCAGTTCTTAAGGATATTTATACGGAGCAGAACCGTGAACTAGAGATTGAATCAACAATTAGAGGACACCCTGTGACAGAAGCTAATATCAAGAGGTGCAAACTTGACCCAAGCGAACGCATATACTGTGATCTCTGCCGCACATCCATTGCCAATTTTCACAGAAGCTGTCCGAACAAAAATTGTTCAGTCGATATATGTCTTTCTTGCTGCAAGGAACTAAGTGAGGGCTTCCATCAAGAGAGAGATGGGAAGAAAAATGCAGAAGGGAAAGGATATGAATGTCGAATCCCAGCAGGTCAAGGAAAAGACTCGGACGCATATGTTCCACTGCATTTCTCGACTTGGAAGCTTAACTCAGACAGTAGCATTCCATGCCCTCCAAAAGAGTGTGGTGGTTGTGGTACTTCAACACTGGAGTTGAGACGCTTATGGAAAAGAGATTGGGTTGAAAAATTAATAACGAATGCCGAGAAATGTACTCTGAATTTTAGGCCAACAGATGTGGATATTGTTCATGAATGTTCCTCATGCTCTACCAATTCTGATTCCATTAGAAGGCAGGCAGCTTTTAGGAAGAATGCTCATGATAATTTCTTATACTCCCCAAATGCTGTTGATCTGGCTGAAGACGATATTGCTCATTTTCAGTTTCATTGGATGAAGGCAGAACCTGTGATAGTCAGAAATGTTCTCGAGAAGACATCTGGACTAAGTTGGGAACCAATGGTTATGTGGAGGGCTTGTAGGGAAATGGATCCAAAGCGTAAAGGTACAGAAGAAGAGACAACAAAAGTGAAAGCTTTGGATTGCTTGGACTGGTGTGAGGTTGAAATAAATCTGCATCAGTTTTTTGAGGGCTACTTAGAAGGCCGCATGCATAAAAACGGTTGGCCAGAAATGTTGAAATTGAAGGACTGGCCTCCCTCAGATTTATTTGAAAAGCGCCTTCCAAGGCATAATGCTGAGTTTATTGCCGCATTGCCTTTCTTTGATTACACTGACCCAAAGTCTGGTATCCTAAATCTCGCAACAAGATTTCCGGAAGGATCCTTGAAGCCAGATCTTGGACCCAAGACATACATTGCGTACGGTTTCCATGAAGAGCTTAATAGAGGAGATTCGGTGACAAAACTTCATTGTGACATTTCTGACGCGGTCAATGTGTTGACACACACAGCTAAAGTGGAAATCCCTCCCGTCAAATACCAAAACATAAAAGTACATCAGAAAAAATATGCAGAAGCCATGTTGCAGAAACAACAATACAGTGGTCAAGTGAAAGAAGCCAGCGAACTTGAAAACAAGTCAATGAAAGAAGTGGATGAAAGTAAAAAGGATTTAAAAGACAAGGCAGCTAACGAAGAACAATCAAATAACAGTTCAAGACCGTCGGGCTCAGGAGAAGCTGAGAAAGTAATTATTTCAAAAGAGGATAATCCCACACAACCTGCTGTGAGTACAAGTGTGGAATCCATACAAGAACAGAAGCTGGATGCTCCAAAAGAAACTGATGGCAATACCAATGAGAGGTCAAAGGCTGTGCATGGTGGTGCTGTCTGGGATATCTTTCGAAGAGAGGATGTTCCAAAACTTATTCAGTTTTTGAAAAGGCACGAGCATGAGTTTCGTCACTTCAATAACGAACCCCTGGAATCCGTTATTCACCCAATTCATGACCAGACTATGTTCTTGAGTGATAGCCAGAAGAAACAGCTGAAAGAAGAATTTGATATAGAACCATGGACCTTTGAGCAACACCTCGGCGAAGCAGTCTTCATACCTGCAGGTTGTCCTCACCAAGTGAGGAATAGACAGTCTTGCATAAAGGTGGCACTAGACTTTGTGGCTCCTGAAAGCGTCGAAGAATGCCTTAGGCTAACACAGGAGTTCCGGAGATTGCCTAAAGACCACAGTTCTAGCGAGGATAAATTGGAGCTTAAGAAAATTGCACTGTATGCTGCGAGTTCAGCCATAAGAGAGGTAAAAGGGCTAATGCAAAGCTCCCGACGCAGTGATACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC WRC zf-4CXXC_R1

Protein Analysis

840

Amino Acids

96.1

Weight (kDa)

7.45

Isoelectric Point (pI)

53.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjC PF02373 685 - 781 1.7e-15 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 4 cut(s) 785, 1957, 2276, 2290
AccB7I CCANNNNNTGG 2 cut(s) 1511, 1565
AccII CGCG 1 cut(s) 1655
AccIII TCCGGA 2 cut(s) 1540, 2391
AciI CCGC 5 cut(s) 412, 637, 1372, 1476, 1655
AclWI GGATC 4 cut(s) 1250, 1263, 1542, 1555
AcoI YGGCCR 1 cut(s) 1391
AcsI RAATTY 2 cut(s) 985, 2225
AcuI CTGAAG 1 cut(s) 1146
AdeI CACNNNGTG 2 cut(s) 571, 2302
AfaI GTAC 6 cut(s) 904, 979, 1273, 1589, 1722, 1960
AfiI CCNNNNNNNGG 4 cut(s) 1056, 1511, 1565, 2028
AflII CTTAAG 3 cut(s) 464, 506, 2438
AflIII ACRYGT 1 cut(s) 236
AhdI GACNNNNNGTC 1 cut(s) 1507
AjiI CACGTC 1 cut(s) 237
AjnI CCWGG 1 cut(s) 2148
Alw26I GTCTC 2 cut(s) 916, 1277
AlwI GGATC 4 cut(s) 1250, 1263, 1542, 1555
AlwNI CAGNNNCTG 4 cut(s) 481, 666, 1172, 1990
Ama87I CYCGRG 2 cut(s) 188, 1193
Aor13HI TCCGGA 2 cut(s) 1540, 2391
AoxI GGCC 4 cut(s) 992, 1369, 1391, 1418
ApeKI GCWGC 7 cut(s) 365, 469, 472, 708, 1064, 1853, 2459
ApoI RAATTY 2 cut(s) 985, 2225
AseI ATTAAT 1 cut(s) 956
AspLEI GCGC 1 cut(s) 1446
AspS9I GGNCC 2 cut(s) 1568, 2244
AsuHPI GGTGA 3 cut(s) 1636, 2156, 2288
AsuII TTCGAA 2 cut(s) 155, 2071
AvaI CYCGRG 2 cut(s) 188, 1193
AvaII GGWCC 2 cut(s) 1568, 2244
AxyI CCTNAGG 1 cut(s) 2372
BaeI ACNNNNGTAYC 2 cut(s) 441, 474
BalI TGGCCA 1 cut(s) 1393
BamHI GGATCC 2 cut(s) 1255, 1547
BanII GRGCYC 1 cut(s) 1898
BauI CACGAG 1 cut(s) 2114
BbsI GAAGAC 3 cut(s) 1134, 1205, 2266
BbvI GCAGC 7 cut(s) 352, 459, 481, 695, 1076, 1865, 2446
BccI CCATC 4 cut(s) 53, 740, 741, 2006
BcgI CGANNNNNNTGC 2 cut(s) 2108, 2142
BciT130I CCWGG 1 cut(s) 2150
BciVI GTATCC 1 cut(s) 1526
BcoDI GTCTC 2 cut(s) 916, 1277
BfaI CTAG 3 cut(s) 539, 2336, 2418
BfmI CTRYAG 2 cut(s) 473, 2283
BfoI RGCGCY 1 cut(s) 1447
BfrI CTTAAG 3 cut(s) 464, 506, 2438
BfuAI ACCTGC 4 cut(s) 785, 1957, 2276, 2290
BfuI GTATCC 1 cut(s) 1526
BglII AGATCT 3 cut(s) 65, 252, 1561
Bme1390I CCNGG 1 cut(s) 2150
Bme18I GGWCC 2 cut(s) 1568, 2244
BmeRI GACNNNNNGTC 1 cut(s) 1507
BmeT110I CYCGRG 2 cut(s) 188, 1193
BmgBI CACGTC 1 cut(s) 237
BmgT120I GGNCC 2 cut(s) 1568, 2244
BmiI GGNNCC 5 cut(s) 1221, 1257, 1549, 1570, 2349
BmrFI CCNGG 1 cut(s) 2150
BmrI ACTGGG 1 cut(s) 494
BmsI GCATC 3 cut(s) 330, 1351, 1984
BmuI ACTGGG 1 cut(s) 494
BpiI GAAGAC 3 cut(s) 1134, 1205, 2266
BpmI CTGGAG 1 cut(s) 935
Bpu10I CCTNAGC 1 cut(s) 1897
Bpu14I TTCGAA 2 cut(s) 155, 2071
BpuEI CTTGAG 1 cut(s) 2212
BsaJI CCNNGG 4 cut(s) 1451, 2148, 2240, 2260
BsaWI WCCGGW 2 cut(s) 1540, 2391
BsaXI ACNNNNNCTCC 4 cut(s) 1228, 1258, 1608, 1638
Bsc4I CCNNNNNNNGG 4 cut(s) 1056, 1511, 1565, 2028
Bse1I ACTGG 4 cut(s) 500, 918, 1322, 1421
Bse21I CCTNAGG 1 cut(s) 2372
Bse3DI GCAATG 3 cut(s) 645, 1478, 1581
BseAI TCCGGA 2 cut(s) 1540, 2391
BseBI CCWGG 1 cut(s) 2150
BseDI CCNNGG 4 cut(s) 1451, 2148, 2240, 2260
BseGI GGATG 5 cut(s) 641, 1164, 1828, 1999, 2086
BseLI CCNNNNNNNGG 4 cut(s) 1056, 1511, 1565, 2028
BseMI GCAATG 3 cut(s) 645, 1478, 1581
BseMII CTCAG 5 cut(s) 870, 1440, 1455, 1899, 1911
BseNI ACTGG 4 cut(s) 500, 918, 1322, 1421
BseRI GAGGAG 2 cut(s) 159, 1629
BseXI GCAGC 7 cut(s) 352, 459, 481, 695, 1076, 1865, 2446
BseYI CCCAGC 1 cut(s) 790
Bsh1236I CGCG 1 cut(s) 1655
BshFI GGCC 4 cut(s) 994, 1371, 1393, 1420
BsiHKCI CYCGRG 2 cut(s) 188, 1193
BsiSI CCGG 3 cut(s) 42, 1541, 2392
BsiWI CGTACG 1 cut(s) 1587
BslI CCNNNNNNNGG 4 cut(s) 1056, 1511, 1565, 2028
BsmAI GTCTC 2 cut(s) 916, 1277
BsmBI CGTCTC 1 cut(s) 916
BsmI GAATGC 4 cut(s) 867, 970, 1084, 2372
BsnI GGCC 4 cut(s) 994, 1371, 1393, 1420
BsoBI CYCGRG 2 cut(s) 188, 1193
Bsp119I TTCGAA 2 cut(s) 155, 2071
Bsp1286I GDGCHC 1 cut(s) 1898
Bsp13I TCCGGA 2 cut(s) 1540, 2391
Bsp19I CCATGG 1 cut(s) 2240
BspACI CCGC 5 cut(s) 412, 637, 1372, 1476, 1655
BspANI GGCC 4 cut(s) 994, 1371, 1393, 1420
BspCNI CTCAG 5 cut(s) 869, 1439, 1456, 1900, 1910
BspEI TCCGGA 2 cut(s) 1540, 2391
BspFNI CGCG 1 cut(s) 1655
BspHI TCATGA 3 cut(s) 1015, 1084, 2173
BspLI GGNNCC 5 cut(s) 1221, 1257, 1549, 1570, 2349
BspMAI CTGCAG 2 cut(s) 477, 2287
BspMI ACCTGC 4 cut(s) 785, 1957, 2276, 2290
BspPI GGATC 4 cut(s) 1250, 1263, 1542, 1555
BspQI GCTCTTC 1 cut(s) 1596
BspT104I TTCGAA 2 cut(s) 155, 2071
BspTI CTTAAG 3 cut(s) 464, 506, 2438
BsrDI GCAATG 3 cut(s) 645, 1478, 1581
BsrI ACTGG 4 cut(s) 500, 918, 1322, 1421
BssECI CCNNGG 4 cut(s) 1451, 2148, 2240, 2260
BssSI CACGAG 1 cut(s) 2114
BssT1I CCWWGG 2 cut(s) 1451, 2240
Bst2BI CACGAG 1 cut(s) 2114
Bst2UI CCWGG 1 cut(s) 2150
Bst6I CTCTTC 6 cut(s) 124, 130, 136, 1275, 1596, 2068
BstAFI CTTAAG 3 cut(s) 464, 506, 2438
BstAPI GCANNNNNTGC 2 cut(s) 873, 2456
BstBI TTCGAA 2 cut(s) 155, 2071
BstC8I GCNNGC 4 cut(s) 77, 1062, 1376, 1789
BstDEI CTNAG 9 cut(s) 719, 856, 1211, 1363, 1426, 1464, 1897, 1908, 2372
BstDSI CCRYGG 1 cut(s) 2240
BstF5I GGATG 5 cut(s) 641, 1164, 1828, 1999, 2086
BstFNI CGCG 1 cut(s) 1655
BstH2I RGCGCY 1 cut(s) 1447
BstHHI GCGC 1 cut(s) 1446
BstMAI GTCTC 2 cut(s) 916, 1277
BstMWI GCNNNNNNNGC 6 cut(s) 318, 469, 873, 2456, 2468, 2508
BstNI CCWGG 1 cut(s) 2150
BstNSI RCATGY 1 cut(s) 1378
BstSCI CCNGG 1 cut(s) 2148
BstSFI CTRYAG 2 cut(s) 473, 2283
BstUI CGCG 1 cut(s) 1655
BstV1I GCAGC 7 cut(s) 352, 459, 481, 695, 1076, 1865, 2446
BstV2I GAAGAC 3 cut(s) 1134, 1205, 2266
BstX2I RGATCY 5 cut(s) 65, 252, 1255, 1547, 1561
BstYI RGATCY 5 cut(s) 65, 252, 1255, 1547, 1561
Bsu36I CCTNAGG 1 cut(s) 2372
BsuI GTATCC 1 cut(s) 1526
BsuRI GGCC 4 cut(s) 994, 1371, 1393, 1420
BtgI CCRYGG 1 cut(s) 2240
BtrI CACGTC 1 cut(s) 237
BtsCI GGATG 5 cut(s) 641, 1164, 1828, 1999, 2086
BtsI GCAGTG 2 cut(s) 827, 2518
BtsIMutI CAGTG 6 cut(s) 827, 911, 1497, 1774, 2450, 2518
BveI ACCTGC 4 cut(s) 785, 1957, 2276, 2290
Cac8I GCNNGC 4 cut(s) 77, 1062, 1376, 1789
CaiI CAGNNNCTG 4 cut(s) 481, 666, 1172, 1990
CciI TCATGA 3 cut(s) 1015, 1084, 2173
CfoI GCGC 1 cut(s) 1446
Cfr13I GGNCC 2 cut(s) 1568, 2244
CseI GACGC 5 cut(s) 824, 933, 1661, 2347, 2517
Csp6I GTAC 6 cut(s) 903, 978, 1272, 1588, 1721, 1959
CspCI CAANNNNNGTGG 2 cut(s) 984, 1019
CviQI GTAC 6 cut(s) 903, 978, 1272, 1588, 1721, 1959
DdeI CTNAG 9 cut(s) 719, 856, 1211, 1363, 1426, 1464, 1897, 1908, 2372
DraI TTTAAA 1 cut(s) 1842
DraIII CACNNNGTG 2 cut(s) 571, 2302
DriI GACNNNNNGTC 1 cut(s) 1507
EaeI YGGCCR 1 cut(s) 1391
Eam1104I CTCTTC 6 cut(s) 124, 130, 136, 1275, 1596, 2068
Eam1105I GACNNNNNGTC 1 cut(s) 1507
EarI CTCTTC 6 cut(s) 124, 130, 136, 1275, 1596, 2068
Eco130I CCWWGG 2 cut(s) 1451, 2240
Eco24I GRGCYC 1 cut(s) 1898
Eco32I GATATC 1 cut(s) 2065
Eco47I GGWCC 2 cut(s) 1568, 2244
Eco57I CTGAAG 1 cut(s) 1146
Eco81I CCTNAGG 1 cut(s) 2372
Eco88I CYCGRG 2 cut(s) 188, 1193
EcoRII CCWGG 1 cut(s) 2148
EcoRV GATATC 1 cut(s) 2065
EcoT14I CCWWGG 2 cut(s) 1451, 2240
EcoT22I ATGCAT 1 cut(s) 1380
EcoT38I GRGCYC 1 cut(s) 1898
ErhI CCWWGG 2 cut(s) 1451, 2240
Esp3I CGTCTC 1 cut(s) 916
FalI AAGNNNNNCTT 2 cut(s) 2355, 2387
FauNDI CATATG 1 cut(s) 820
FokI GGATG 5 cut(s) 628, 1171, 1835, 2006, 2093
FriOI GRGCYC 1 cut(s) 1898
FspBI CTAG 3 cut(s) 539, 2336, 2418
GlaI GCGC 1 cut(s) 1445
GsaI CCCAGC 1 cut(s) 794
GsuI CTGGAG 1 cut(s) 935
HaeII RGCGCY 1 cut(s) 1447
HaeIII GGCC 4 cut(s) 994, 1371, 1393, 1420
HapII CCGG 3 cut(s) 42, 1541, 2392
HgaI GACGC 5 cut(s) 824, 933, 1661, 2347, 2517
HhaI GCGC 1 cut(s) 1446
Hin6I GCGC 1 cut(s) 1444
HinP1I GCGC 1 cut(s) 1444
HincII GTYRAC 1 cut(s) 1668
HindII GTYRAC 1 cut(s) 1668
HindIII AAGCTT 3 cut(s) 461, 848, 1299
HpaII CCGG 3 cut(s) 42, 1541, 2392
HphI GGTGA 3 cut(s) 1636, 2156, 2288
Hpy166II GTNNAC 2 cut(s) 536, 1668
Hpy8I GTNNAC 2 cut(s) 536, 1668
Hpy99I CGWCG 4 cut(s) 238, 1894, 2363, 2511
HpyAV CCTTC 8 cut(s) 187, 758, 1050, 1156, 1361, 1405, 1457, 1538
HpyCH4IV ACGT 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 6 cut(s) 318, 469, 873, 2456, 2468, 2508
HpyF3I CTNAG 9 cut(s) 719, 856, 1211, 1363, 1426, 1464, 1897, 1908, 2372
HpySE526I ACGT 1 cut(s) 236
HspAI GCGC 1 cut(s) 1444
Kpn2I TCCGGA 2 cut(s) 1540, 2391
LguI GCTCTTC 1 cut(s) 1596
LmnI GCTCC 5 cut(s) 523, 2002, 2353, 2434, 2507
Lsp1109I GCAGC 7 cut(s) 352, 459, 481, 695, 1076, 1865, 2446
LweI GCATC 3 cut(s) 330, 1351, 1984
MaeI CTAG 3 cut(s) 539, 2336, 2418
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 5 cut(s) 293, 571, 1624, 1640, 2129
MflI RGATCY 5 cut(s) 65, 252, 1255, 1547, 1561
MhlI GDGCHC 1 cut(s) 1898
MlsI TGGCCA 1 cut(s) 1393
MluNI TGGCCA 1 cut(s) 1393
MlyI GAGTC 1 cut(s) 803
Mox20I TGGCCA 1 cut(s) 1393
Mph1103I ATGCAT 1 cut(s) 1380
MroI TCCGGA 2 cut(s) 1540, 2391
MscI TGGCCA 1 cut(s) 1393
MseI TTAA 8 cut(s) 201, 465, 507, 852, 956, 1608, 1841, 2439
MslI CAYNNNNRTG 3 cut(s) 2049, 2118, 2327
Msp20I TGGCCA 1 cut(s) 1393
MspA1I CMGCKG 2 cut(s) 472, 2215
MspCI CTTAAG 3 cut(s) 464, 506, 2438
MspI CCGG 3 cut(s) 42, 1541, 2392
MspR9I CCNGG 1 cut(s) 2150
Mva1269I GAATGC 4 cut(s) 867, 970, 1084, 2372
MvaI CCWGG 1 cut(s) 2150
MvnI CGCG 1 cut(s) 1655
MwoI GCNNNNNNNGC 6 cut(s) 318, 469, 873, 2456, 2468, 2508
NcoI CCATGG 1 cut(s) 2240
NdeI CATATG 1 cut(s) 820
NlaIV GGNNCC 5 cut(s) 1221, 1257, 1549, 1570, 2349
NmeAIII GCCGAG 2 cut(s) 994, 2241
NmuCI GTSAC 4 cut(s) 571, 1624, 1640, 2129
NsiI ATGCAT 1 cut(s) 1380
NspI RCATGY 1 cut(s) 1378
NspV TTCGAA 2 cut(s) 155, 2071
PaeI GCATGC 1 cut(s) 1378
PaeR7I CTCGAG 1 cut(s) 1193
PagI TCATGA 3 cut(s) 1015, 1084, 2173
PciSI GCTCTTC 1 cut(s) 1596
PctI GAATGC 4 cut(s) 867, 970, 1084, 2372
PfeI GAWTC 9 cut(s) 24, 38, 123, 548, 786, 1046, 1619, 1970, 2153
Pfl23II CGTACG 1 cut(s) 1587
PflFI GACNNNGTC 1 cut(s) 1655
PflMI CCANNNNNTGG 2 cut(s) 1511, 1565
PleI GAGTC 1 cut(s) 803
PpsI GAGTC 1 cut(s) 803
PshBI ATTAAT 1 cut(s) 956
Psp6I CCWGG 1 cut(s) 2148
PspFI CCCAGC 1 cut(s) 790
PspGI CCWGG 1 cut(s) 2148
PspLI CGTACG 1 cut(s) 1587
PspN4I GGNNCC 5 cut(s) 1221, 1257, 1549, 1570, 2349
PspPI GGNCC 2 cut(s) 1568, 2244
PstI CTGCAG 2 cut(s) 477, 2287
PstNI CAGNNNCTG 4 cut(s) 481, 666, 1172, 1990
PsuI RGATCY 5 cut(s) 65, 252, 1255, 1547, 1561
PsyI GACNNNGTC 1 cut(s) 1655
PvuII CAGCTG 2 cut(s) 472, 2215
RsaI GTAC 6 cut(s) 904, 979, 1273, 1589, 1722, 1960
RsaNI GTAC 6 cut(s) 903, 978, 1272, 1588, 1721, 1959
RseI CAYNNNNRTG 3 cut(s) 2049, 2118, 2327
SapI GCTCTTC 1 cut(s) 1596
SaqAI TTAA 8 cut(s) 201, 465, 507, 852, 956, 1608, 1841, 2439
Sau96I GGNCC 2 cut(s) 1568, 2244
SbfI CCTGCAGG 1 cut(s) 2287
SchI GAGTC 1 cut(s) 803
ScrFI CCNGG 1 cut(s) 2150
SdaI CCTGCAGG 1 cut(s) 2287
SduI GDGCHC 1 cut(s) 1898
SfaNI GCATC 3 cut(s) 330, 1351, 1984
SfcI CTRYAG 2 cut(s) 473, 2283
Sfr274I CTCGAG 1 cut(s) 1193
SfuI TTCGAA 2 cut(s) 155, 2071
SinI GGWCC 2 cut(s) 1568, 2244
SlaI CTCGAG 1 cut(s) 1193
SmiMI CAYNNNNRTG 3 cut(s) 2049, 2118, 2327
SmlI CTYRAG 5 cut(s) 464, 506, 1193, 2191, 2438
SmoI CTYRAG 5 cut(s) 464, 506, 1193, 2191, 2438
SphI GCATGC 1 cut(s) 1378
Sse8387I CCTGCAGG 1 cut(s) 2287
SsiI CCGC 5 cut(s) 412, 637, 1372, 1476, 1655
SspMI CTAG 3 cut(s) 539, 2336, 2418
StyD4I CCNGG 1 cut(s) 2148
StyI CCWWGG 2 cut(s) 1451, 2240
TaiI ACGT 1 cut(s) 239
TaqI TCGA 9 cut(s) 54, 155, 233, 690, 784, 839, 1194, 2071, 2361
TatI WGTACW 3 cut(s) 977, 1720, 1958
TauI GCSGC 3 cut(s) 639, 1374, 1478
TfiI GAWTC 9 cut(s) 24, 38, 123, 548, 786, 1046, 1619, 1970, 2153
Tru1I TTAA 8 cut(s) 201, 465, 507, 852, 956, 1608, 1841, 2439
Tru9I TTAA 8 cut(s) 201, 465, 507, 852, 956, 1608, 1841, 2439
TscAI CASTG 6 cut(s) 834, 918, 1504, 1774, 2457, 2518
TseFI GTSAC 4 cut(s) 571, 1624, 1640, 2129
TseI GCWGC 7 cut(s) 365, 469, 472, 708, 1064, 1853, 2459
Tsp45I GTSAC 4 cut(s) 571, 1624, 1640, 2129
TspGWI ACGGA 3 cut(s) 225, 536, 2146
TspRI CASTG 6 cut(s) 834, 918, 1504, 1774, 2457, 2518
Tth111I GACNNNGTC 1 cut(s) 1655
Van91I CCANNNNNTGG 2 cut(s) 1511, 1565
Vha464I CTTAAG 3 cut(s) 464, 506, 2438
VpaK11BI GGWCC 2 cut(s) 1568, 2244
VspI ATTAAT 1 cut(s) 956
XapI RAATTY 2 cut(s) 985, 2225
XceI RCATGY 1 cut(s) 1378
XcmI CCANNNNNNNNNTGG 1 cut(s) 1230
XhoI CTCGAG 1 cut(s) 1193
XspI CTAG 3 cut(s) 539, 2336, 2418
Zsp2I ATGCAT 1 cut(s) 1380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.