Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000371.1

Orthogroup ID

OG0002674

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 7018

Gene Structure 7018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000371.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1283 bp

cgctcccctacagtgactatactgatcccaaagattcaaatgctggtattctcaatcttgctacaagacttcctgaagggtcgctgaaacctgatatgggaccaaaaacatacattgcttatggattctccgaagagcttggtagaggtgattcagtgactaagctgcactgtgatatgtctgatgcggtaaatgttctgacacacacagcaacagtgaagattgagccgtggcagcacaatgccataaagaatgtgaaaagcaaacatgaagctgaagacctttgtgatctctacaatgaaaaaaatcagaaaaagggcagggttagaggaacattgttgaagaaaactcgcaacgtcctggttaagggtgctgattcttctgaatatactaaaagtggtaaagttgtggagaatgaccatctagtgtcaactctgcaggatgggaagggaaacaaactggacagagcacaatcatgtagaacttcacttttgtcagattctgtcgatccaggcatccttagatctgatgaaacagaacatcttccggaacctcttgctactactgaactaaatgaagtaaaggttgcgagtgttggtcatcagaggaatgatgtgctaaaatccacctcgccttgtgcaaatggagttgaaaaagagcaagagtgtgttcaatgttccagtgacatgatcagtggaaggcttgaagggaaagatgcttcaagggatgcaagtgtaaacacacatgcaacaaaggatttcaaaggtagtgacaagttggacattgtccatagtggtgctgtttgggacatctttcgtatccaggacactcccaagttaatagagtacctggagaaacacaaaaaagaatttcgccaccttaataatcatcctgtagattctgttgttcatcctattcacgatcagactctgtacttgaatgagagacataagaaacaactaaaggaggagttcgatgtggagccttggacatttgagcaacatcttggtgaggcagtttttattccagctggatgtcctcatcaagtgagaaatagacaatcttgtataaaggtagcacttgattttgtatctcctgagaatcttgaagtatgtctgcgattaactgaagagttccgtttactcccaaaaacccacagagccaaggaagataaattggaggtgaagaagatgacactctatgctgtaagttcagcacttcgagaagccaaaaatttgatgccggggcttggaacgtcaaatgcagagaaagatgacaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

JmjC WRC zf-4CXXC_R1

Protein Analysis

426

Amino Acids

47.75

Weight (kDa)

6.34

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00990
fragaria_vesca	FvH4_7g16681 FvH4_7g16681 FvH4_7g16681 FvH4_7g16681 FvH4_7g16681
malus_domestica	MD01G1082300.v1.1
prunus_persica	Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0359841
rosa_laevigata	RLG00000027849
rosa_multiflora	Rmu_sc0003191.1_g000008 Rmu_ssc0000371.1_g000001
rosa_roxburghii	Rroxscaffold_4G00296770
rosa_rugosa	Rorug01G0273000
rosa_samantha	Rh1AG287100 Rh1BG252900 Rh1DG281900
rosa_wichuraiana	Rw1G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	546
AciI	CCGC	1 cut(s)	187
AclWI	GGATC	2 cut(s)	19, 502
AcsI	RAATTY	2 cut(s)	868, 1233
AcuI	CTGAAG	3 cut(s)	95, 296, 1148
AfaI	GTAC	2 cut(s)	847, 934
AfiI	CCNNNNNNNGG	3 cut(s)	97, 366, 1249
AgsI	TTSAA	9 cut(s)	38, 342, 652, 673, 706, 722, 762, 939, 1108
AjnI	CCWGG	4 cut(s)	359, 510, 821, 848
AluBI	AGCT	4 cut(s)	138, 165, 274, 1030
AluI	AGCT	4 cut(s)	138, 165, 274, 1030
Alw21I	GWGCWC	1 cut(s)	471
Alw26I	GTCTC	1 cut(s)	939
AlwI	GGATC	2 cut(s)	19, 502
AlwNI	CAGNNNCTG	2 cut(s)	502, 930
Aor13HI	TCCGGA	1 cut(s)	546
ApeKI	GCWGC	2 cut(s)	165, 234
ApoI	RAATTY	2 cut(s)	868, 1233
Asp700I	GAANNNNTTC	1 cut(s)	542
AspS9I	GGNCC	1 cut(s)	100
AsuC2I	CCSGG	1 cut(s)	1244
AsuHPI	GGTGA	3 cut(s)	160, 1021, 1194
AvaII	GGWCC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	471
BbvI	GCAGC	2 cut(s)	152, 246
BccI	CCATC	2 cut(s)	428, 436
BceAI	ACGGC	1 cut(s)	213
BciT130I	CCWGG	4 cut(s)	361, 512, 823, 850
BciVI	GTATCC	1 cut(s)	829
BclI	TGATCA	1 cut(s)	689
BcnI	CCSGG	1 cut(s)	1244
BcoDI	GTCTC	1 cut(s)	939
BfaI	CTAG	1 cut(s)	424
BfmI	CTRYAG	3 cut(s)	9, 436, 893
BfuI	GTATCC	1 cut(s)	829
BglII	AGATCT	1 cut(s)	523
BisI	GCNGC	2 cut(s)	166, 235
BlsI	GCNGC	2 cut(s)	167, 236
Bme1390I	CCNGG	5 cut(s)	361, 512, 823, 850, 1244
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	3 cut(s)	101, 551, 983
BmrFI	CCNGG	5 cut(s)	361, 512, 823, 850, 1244
BmsI	GCATC	5 cut(s)	174, 524, 705, 717, 1229
BpiI	GAAGAC	1 cut(s)	284
BpmI	CTGGAG	1 cut(s)	871
BpuMI	CCSGG	1 cut(s)	1244
BsaJI	CCNNGG	4 cut(s)	229, 985, 1163, 1243
BsaWI	WCCGGW	1 cut(s)	546
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 366, 1249
Bse1I	ACTGG	2 cut(s)	464, 680
Bse3DI	GCAATG	1 cut(s)	113
BseAI	TCCGGA	1 cut(s)	546
BseBI	CCWGG	4 cut(s)	361, 512, 823, 850
BseDI	CCNNGG	4 cut(s)	229, 985, 1163, 1243
BseGI	GGATG	6 cut(s)	447, 515, 732, 888, 909, 1039
BseLI	CCNNNNNNNGG	3 cut(s)	97, 366, 1249
BseMI	GCAATG	1 cut(s)	113
BseMII	CTCAG	1 cut(s)	1088
BseNI	ACTGG	2 cut(s)	464, 680
BseRI	GAGGAG	1 cut(s)	982
BseXI	GCAGC	2 cut(s)	152, 246
BsgI	GTGCAG	1 cut(s)	151
BsiHKAI	GWGCWC	1 cut(s)	471
BsiSI	CCGG	2 cut(s)	547, 1243
BslFI	GGGAC	2 cut(s)	113, 820
BslI	CCNNNNNNNGG	3 cut(s)	97, 366, 1249
BsmAI	GTCTC	1 cut(s)	939
BsmFI	GGGAC	2 cut(s)	113, 820
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp13I	TCCGGA	1 cut(s)	546
Bsp143I	GATC	6 cut(s)	24, 288, 507, 523, 689, 921
BspACI	CCGC	1 cut(s)	187
BspCNI	CTCAG	1 cut(s)	1089
BspEI	TCCGGA	1 cut(s)	546
BspLI	GGNNCC	3 cut(s)	101, 551, 983
BspMAI	CTGCAG	1 cut(s)	440
BspPI	GGATC	2 cut(s)	19, 502
BspQI	GCTCTTC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	464, 680
BssECI	CCNNGG	4 cut(s)	229, 985, 1163, 1243
BssMI	GATC	6 cut(s)	24, 288, 507, 523, 689, 921
BssT1I	CCWWGG	2 cut(s)	985, 1163
Bst2UI	CCWGG	4 cut(s)	361, 512, 823, 850
Bst4CI	ACNGT	3 cut(s)	13, 172, 216
Bst6I	CTCTTC	2 cut(s)	128, 1124
BstDEI	CTNAG	3 cut(s)	161, 520, 1097
BstDSI	CCRYGG	1 cut(s)	229
BstENI	CCTNNNNNAGG	1 cut(s)	364
BstF5I	GGATG	6 cut(s)	447, 515, 732, 888, 909, 1039
BstKTI	GATC	6 cut(s)	27, 291, 510, 526, 692, 924
BstMAI	GTCTC	1 cut(s)	939
BstMBI	GATC	6 cut(s)	24, 288, 507, 523, 689, 921
BstMWI	GCNNNNNNNGC	1 cut(s)	234
BstNI	CCWGG	4 cut(s)	361, 512, 823, 850
BstNSI	RCATGY	1 cut(s)	748
BstSCI	CCNGG	5 cut(s)	359, 510, 821, 848, 1242
BstSFI	CTRYAG	3 cut(s)	9, 436, 893
BstV1I	GCAGC	2 cut(s)	152, 246
BstV2I	GAAGAC	1 cut(s)	284
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
BsuI	GTATCC	1 cut(s)	829
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	6 cut(s)	447, 515, 732, 888, 909, 1039
BtsIMutI	CAGTG	6 cut(s)	18, 161, 168, 221, 687, 699
CaiI	CAGNNNCTG	2 cut(s)	502, 930
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	846, 933
CviAII	CATG	4 cut(s)	268, 476, 687, 745
CviQI	GTAC	2 cut(s)	846, 933
DdeI	CTNAG	3 cut(s)	161, 520, 1097
DpnI	GATC	6 cut(s)	26, 290, 509, 525, 691, 923
DpnII	GATC	6 cut(s)	24, 288, 507, 523, 689, 921
Eam1104I	CTCTTC	2 cut(s)	128, 1124
EarI	CTCTTC	2 cut(s)	128, 1124
Eco130I	CCWWGG	2 cut(s)	985, 1163
Eco47I	GGWCC	1 cut(s)	100
Eco57I	CTGAAG	3 cut(s)	95, 296, 1148
EcoNI	CCTNNNNNAGG	1 cut(s)	364
EcoRII	CCWGG	4 cut(s)	359, 510, 821, 848
EcoT14I	CCWWGG	2 cut(s)	985, 1163
ErhI	CCWWGG	2 cut(s)	985, 1163
FaeI	CATG	4 cut(s)	271, 479, 690, 748
FaqI	GGGAC	2 cut(s)	113, 820
FatI	CATG	4 cut(s)	267, 475, 686, 744
FbaI	TGATCA	1 cut(s)	689
Fnu4HI	GCNGC	2 cut(s)	166, 235
FokI	GGATG	6 cut(s)	454, 502, 739, 875, 896, 1046
Fsp4HI	GCNGC	2 cut(s)	166, 235
FspBI	CTAG	1 cut(s)	424
GluI	GCNGC	2 cut(s)	166, 235
GsuI	CTGGAG	1 cut(s)	871
HapII	CCGG	2 cut(s)	547, 1243
Hin1II	CATG	4 cut(s)	271, 479, 690, 748
HincII	GTYRAC	1 cut(s)	431
HindII	GTYRAC	1 cut(s)	431
HinfI	GANTC	8 cut(s)	34, 125, 151, 376, 499, 898, 927, 1101
HpaII	CCGG	2 cut(s)	547, 1243
HphI	GGTGA	3 cut(s)	160, 1021, 1194
Hpy166II	GTNNAC	3 cut(s)	431, 738, 1141
Hpy188I	TCNGA	9 cut(s)	132, 183, 200, 311, 384, 498, 528, 605, 926
Hpy188III	TCNNGA	6 cut(s)	73, 547, 919, 1096, 1105, 1222
Hpy8I	GTNNAC	3 cut(s)	431, 738, 1141
HpyAV	CCTTC	4 cut(s)	70, 441, 692, 700
HpyCH4III	ACNGT	3 cut(s)	13, 172, 216
HpyCH4IV	ACGT	2 cut(s)	356, 1255
HpyCH4V	TGCA	6 cut(s)	168, 438, 640, 730, 748, 1264
HpyF10VI	GCNNNNNNNGC	1 cut(s)	234
HpyF3I	CTNAG	3 cut(s)	161, 520, 1097
HpySE526I	ACGT	2 cut(s)	356, 1255
Hsp92II	CATG	4 cut(s)	271, 479, 690, 748
Kpn2I	TCCGGA	1 cut(s)	546
Ksp22I	TGATCA	1 cut(s)	689
Kzo9I	GATC	6 cut(s)	24, 288, 507, 523, 689, 921
LguI	GCTCTTC	1 cut(s)	128
LmnI	GCTCC	2 cut(s)	8, 981
Lsp1109I	GCAGC	2 cut(s)	152, 246
LweI	GCATC	5 cut(s)	174, 524, 705, 717, 1229
MaeI	CTAG	1 cut(s)	424
MaeII	ACGT	2 cut(s)	356, 1255
MaeIII	GTNAC	4 cut(s)	13, 156, 682, 769
MalI	GATC	6 cut(s)	26, 290, 509, 525, 691, 923
MboI	GATC	6 cut(s)	24, 288, 507, 523, 689, 921
MflI	RGATCY	1 cut(s)	523
MhlI	GDGCHC	1 cut(s)	471
MluCI	AATT	3 cut(s)	868, 1174, 1233
MlyI	GAGTC	1 cut(s)	921
MmeI	TCCRAC	1 cut(s)	758
MnlI	CCTC	9 cut(s)	139, 322, 563, 599, 639, 960, 1005, 1049, 1173
MroI	TCCGGA	1 cut(s)	546
MroXI	GAANNNNTTC	1 cut(s)	542
MseI	TTAA	4 cut(s)	365, 838, 881, 1123
MslI	CAYNNNNRTG	3 cut(s)	474, 794, 1007
MspA1I	CMGCKG	1 cut(s)	1030
MspI	CCGG	2 cut(s)	547, 1243
MspR9I	CCNGG	5 cut(s)	361, 512, 823, 850, 1244
MvaI	CCWGG	4 cut(s)	361, 512, 823, 850
MwoI	GCNNNNNNNGC	1 cut(s)	234
NciI	CCSGG	1 cut(s)	1244
NdeII	GATC	6 cut(s)	24, 288, 507, 523, 689, 921
NlaIII	CATG	4 cut(s)	271, 479, 690, 748
NlaIV	GGNNCC	3 cut(s)	101, 551, 983
NmuCI	GTSAC	4 cut(s)	13, 156, 682, 769
NspI	RCATGY	1 cut(s)	748
PciSI	GCTCTTC	1 cut(s)	128
PdmI	GAANNNNTTC	1 cut(s)	542
PfeI	GAWTC	7 cut(s)	34, 125, 151, 376, 499, 898, 1101
PflFI	GACNNNGTC	1 cut(s)	784
PfoI	TCCNGGA	1 cut(s)	821
PkrI	GCNGC	2 cut(s)	167, 236
PleI	GAGTC	1 cut(s)	921
PpsI	GAGTC	1 cut(s)	921
Psp6I	CCWGG	4 cut(s)	359, 510, 821, 848
PspGI	CCWGG	4 cut(s)	359, 510, 821, 848
PspN4I	GGNNCC	3 cut(s)	101, 551, 983
PspPI	GGNCC	1 cut(s)	100
PstI	CTGCAG	1 cut(s)	440
PstNI	CAGNNNCTG	2 cut(s)	502, 930
PsuI	RGATCY	1 cut(s)	523
PsyI	GACNNNGTC	1 cut(s)	784
PvuII	CAGCTG	1 cut(s)	1030
RsaI	GTAC	2 cut(s)	847, 934
RsaNI	GTAC	2 cut(s)	846, 933
RseI	CAYNNNNRTG	3 cut(s)	474, 794, 1007
SapI	GCTCTTC	1 cut(s)	128
SaqAI	TTAA	4 cut(s)	365, 838, 881, 1123
SatI	GCNGC	2 cut(s)	166, 235
Sau3AI	GATC	6 cut(s)	24, 288, 507, 523, 689, 921
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	1 cut(s)	921
ScrFI	CCNGG	5 cut(s)	361, 512, 823, 850, 1244
SduI	GDGCHC	1 cut(s)	471
SfaNI	GCATC	5 cut(s)	174, 524, 705, 717, 1229
SfcI	CTRYAG	3 cut(s)	9, 436, 893
SinI	GGWCC	1 cut(s)	100
SmiMI	CAYNNNNRTG	3 cut(s)	474, 794, 1007
Sse9I	AATT	3 cut(s)	868, 1174, 1233
SsiI	CCGC	1 cut(s)	187
SspMI	CTAG	1 cut(s)	424
StyD4I	CCNGG	5 cut(s)	359, 510, 821, 848, 1242
StyI	CCWWGG	2 cut(s)	985, 1163
TaaI	ACNGT	3 cut(s)	13, 172, 216
TaiI	ACGT	2 cut(s)	359, 1258
TaqI	TCGA	3 cut(s)	506, 974, 1221
TasI	AATT	3 cut(s)	868, 1174, 1233
TatI	WGTACW	1 cut(s)	932
TfiI	GAWTC	7 cut(s)	34, 125, 151, 376, 499, 898, 1101
Tru1I	TTAA	4 cut(s)	365, 838, 881, 1123
Tru9I	TTAA	4 cut(s)	365, 838, 881, 1123
TscAI	CASTG	6 cut(s)	18, 161, 175, 221, 687, 699
TseFI	GTSAC	4 cut(s)	13, 156, 682, 769
TseI	GCWGC	2 cut(s)	165, 234
Tsp45I	GTSAC	4 cut(s)	13, 156, 682, 769
TspDTI	ATGAA	5 cut(s)	284, 314, 545, 590, 898
TspGWI	ACGGA	1 cut(s)	1126
TspRI	CASTG	6 cut(s)	18, 161, 175, 221, 687, 699
Tth111I	GACNNNGTC	1 cut(s)	784
VpaK11BI	GGWCC	1 cut(s)	100
XagI	CCTNNNNNAGG	1 cut(s)	364
XapI	RAATTY	2 cut(s)	868, 1233
XceI	RCATGY	1 cut(s)	748
XmnI	GAANNNNTTC	1 cut(s)	542
XspI	CTAG	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.