Rorug01G0273000
ERF Family

A domain family that is part of the cupin metalloenzyme superfamily.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002674
Physical Location & Seq
Forward (+)
38559416 .. 38559988
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0273000.1

Sequence Viewer

Length: 573 bp
ATGGACAACACCCAAAGGCAACTTGATAATCACTGTGCTGCCCTCCGCCGTAAAATTAAATTGTTGATTTGTGGAGTAGCCGTGGTAATTTGTCTTATCTTCTTTATGAGTTTGGTCCTCACCAAGAGCCCGAATAACGTCAACTGTCATGTAACCAGTGCATTGCTCACCGATTCCAACCTCACCGTTGAGATCACTATTCGAAACCCGAACAGTTTCTACCGTGTCCACCATGATCACATTGACATTACTGCCAACTACAAAAACCAGACGTTGGGTTCGACATTGAATTATGCCTCCTTCTCGCAAGGACGTAATCGCGAAACACGGCTAACACCGTCCTTCAACGGGCTGATCCTTGGCGGAGGCGATGACCTCCGCGGGTCGAACAACTGCGGAAATAACTATTACGATATTATTGTCAAGCTCAACATGCAAGACGAGTACAAGAAACAGATTGTTCCCAAGAAGAGATTTCAAAGGAATTTGGAGTATACGTGCGAGTTGAAGGTTCCTTCTGGCAGTGGAAGTAGCTTCAACACCACCCTGTGCCGCTATCTACAAATTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC WRC zf-4CXXC_R1

Protein Analysis

190

Amino Acids

21.51

Weight (kDa)

9.23

Isoelectric Point (pI)

38.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 65 - 112 7.6e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 274
AccI GTMKAC 1 cut(s) 494
AccII CGCG 2 cut(s) 321, 381
AciI CCGC 6 cut(s) 46, 363, 379, 381, 396, 553
AclWI GGATC 1 cut(s) 349
AcsI RAATTY 2 cut(s) 484, 564
AdeI CACNNNGTG 1 cut(s) 549
AfaI GTAC 1 cut(s) 446
AfiI CCNNNNNNNGG 2 cut(s) 274, 348
AgsI TTSAA 5 cut(s) 289, 346, 479, 508, 538
AluBI AGCT 2 cut(s) 427, 534
AluI AGCT 2 cut(s) 427, 534
AlwI GGATC 1 cut(s) 349
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 2 cut(s) 484, 564
ArsI GACNNNNNNTTYG 2 cut(s) 262, 294
Asp700I GAANNNNTTC 1 cut(s) 215
AspS9I GGNCC 1 cut(s) 115
AsuHPI GGTGA 3 cut(s) 112, 160, 175
AsuII TTCGAA 1 cut(s) 202
AvaII GGWCC 1 cut(s) 115
BanII GRGCYC 1 cut(s) 131
BbvI GCAGC 1 cut(s) 25
BceAI ACGGC 3 cut(s) 33, 65, 344
BclI TGATCA 1 cut(s) 235
BisI GCNGC 2 cut(s) 39, 553
BlsI GCNGC 2 cut(s) 40, 554
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 513
Bpu14I TTCGAA 1 cut(s) 202
BsaAI YACGTR 1 cut(s) 498
BsaJI CCNNGG 3 cut(s) 81, 358, 379
BsaXI ACNNNNNCTCC 4 cut(s) 66, 96, 482, 512
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 348
Bse1I ACTGG 1 cut(s) 156
Bse3DI GCAATG 1 cut(s) 161
BseDI CCNNGG 3 cut(s) 81, 358, 379
BseLI CCNNNNNNNGG 2 cut(s) 274, 348
BseMI GCAATG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 156
BseXI GCAGC 1 cut(s) 25
Bsh1236I CGCG 2 cut(s) 321, 381
BslI CCNNNNNNNGG 2 cut(s) 274, 348
Bsp119I TTCGAA 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 3 cut(s) 192, 235, 354
Bsp68I TCGCGA 1 cut(s) 321
BspACI CCGC 6 cut(s) 46, 363, 379, 381, 396, 553
BspFNI CGCG 2 cut(s) 321, 381
BspLI GGNNCC 1 cut(s) 513
BspPI GGATC 1 cut(s) 349
BspT104I TTCGAA 1 cut(s) 202
BsrDI GCAATG 1 cut(s) 161
BsrI ACTGG 1 cut(s) 156
BssECI CCNNGG 3 cut(s) 81, 358, 379
BssMI GATC 3 cut(s) 192, 235, 354
BssNAI GTATAC 1 cut(s) 495
BssT1I CCWWGG 1 cut(s) 358
Bst1107I GTATAC 1 cut(s) 495
Bst4CI ACNGT 6 cut(s) 35, 146, 187, 215, 224, 339
Bst6I CTCTTC 1 cut(s) 464
BstBAI YACGTR 1 cut(s) 498
BstBI TTCGAA 1 cut(s) 202
BstDSI CCRYGG 2 cut(s) 81, 379
BstFNI CGCG 2 cut(s) 321, 381
BstKTI GATC 3 cut(s) 195, 238, 357
BstMBI GATC 3 cut(s) 192, 235, 354
BstMWI GCNNNNNNNGC 1 cut(s) 433
BstNSI RCATGY 1 cut(s) 436
BstUI CGCG 2 cut(s) 321, 381
BstV1I GCAGC 1 cut(s) 25
BstZ17I GTATAC 1 cut(s) 495
BtgI CCRYGG 2 cut(s) 81, 379
BtgZI GCGATG 1 cut(s) 384
BtsI GCAGTG 1 cut(s) 529
BtsIMutI CAGTG 3 cut(s) 31, 163, 529
BtuMI TCGCGA 1 cut(s) 321
Cfr13I GGNCC 1 cut(s) 115
Cfr42I CCGCGG 1 cut(s) 382
Csp6I GTAC 1 cut(s) 445
CviAII CATG 4 cut(s) 149, 233, 433, 570
CviJI RGCY 6 cut(s) 80, 129, 331, 352, 427, 534
CviKI_1 RGCY 6 cut(s) 80, 129, 331, 352, 427, 534
CviQI GTAC 1 cut(s) 445
DpnI GATC 3 cut(s) 194, 237, 356
DpnII GATC 3 cut(s) 192, 235, 354
DraIII CACNNNGTG 1 cut(s) 549
Eam1104I CTCTTC 1 cut(s) 464
EarI CTCTTC 1 cut(s) 464
EciI GGCGGA 2 cut(s) 35, 378
Eco130I CCWWGG 1 cut(s) 358
Eco24I GRGCYC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 358
EcoT38I GRGCYC 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 358
FaeI CATG 4 cut(s) 152, 236, 436, 573
FaiI YATR 7 cut(s) 107, 150, 234, 294, 434, 495, 571
FatI CATG 4 cut(s) 148, 232, 432, 569
FauI CCCGC 1 cut(s) 374
FbaI TGATCA 1 cut(s) 235
FblI GTMKAC 1 cut(s) 494
Fnu4HI GCNGC 2 cut(s) 39, 553
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 2 cut(s) 39, 553
GluI GCNGC 2 cut(s) 39, 553
Hin1II CATG 4 cut(s) 152, 236, 436, 573
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 1 cut(s) 173
HphI GGTGA 3 cut(s) 112, 160, 175
Hpy166II GTNNAC 3 cut(s) 142, 229, 495
Hpy188III TCNNGA 1 cut(s) 320
Hpy8I GTNNAC 3 cut(s) 142, 229, 495
HpyAV CCTTC 4 cut(s) 310, 352, 502, 525
HpyCH4III ACNGT 6 cut(s) 35, 146, 187, 215, 224, 339
HpyCH4IV ACGT 4 cut(s) 138, 272, 313, 497
HpyCH4V TGCA 2 cut(s) 161, 436
HpyF10VI GCNNNNNNNGC 1 cut(s) 433
HpySE526I ACGT 4 cut(s) 138, 272, 313, 497
Hsp92II CATG 4 cut(s) 152, 236, 436, 573
Ksp22I TGATCA 1 cut(s) 235
KspI CCGCGG 1 cut(s) 382
Kzo9I GATC 3 cut(s) 192, 235, 354
LpnPI CCDG 4 cut(s) 169, 281, 504, 560
Lsp1109I GCAGC 1 cut(s) 25
MaeII ACGT 4 cut(s) 138, 272, 313, 497
MaeIII GTNAC 1 cut(s) 151
MalI GATC 3 cut(s) 194, 237, 356
MboI GATC 3 cut(s) 192, 235, 354
MboII GAAGA 2 cut(s) 91, 481
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 6 cut(s) 54, 59, 87, 289, 484, 564
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 6 cut(s) 53, 128, 191, 307, 359, 386
MroXI GAANNNNTTC 1 cut(s) 215
MseI TTAA 1 cut(s) 57
MspA1I CMGCKG 1 cut(s) 381
MvnI CGCG 2 cut(s) 321, 381
MwoI GCNNNNNNNGC 1 cut(s) 433
NdeII GATC 3 cut(s) 192, 235, 354
NlaIII CATG 4 cut(s) 152, 236, 436, 573
NlaIV GGNNCC 1 cut(s) 513
NruI TCGCGA 1 cut(s) 321
NspI RCATGY 1 cut(s) 436
NspV TTCGAA 1 cut(s) 202
PcsI WCGNNNNNNNCGW 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 1 cut(s) 173
PflMI CCANNNNNTGG 1 cut(s) 274
PkrI GCNGC 2 cut(s) 40, 554
Ppu21I YACGTR 1 cut(s) 498
PspN4I GGNNCC 1 cut(s) 513
PspPI GGNCC 1 cut(s) 115
PsrI GAACNNNNNNTAC 2 cut(s) 203, 235
RruI TCGCGA 1 cut(s) 321
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
SacII CCGCGG 1 cut(s) 382
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 2 cut(s) 39, 553
Sau3AI GATC 3 cut(s) 192, 235, 354
Sau96I GGNCC 1 cut(s) 115
SduI GDGCHC 1 cut(s) 131
SetI ASST 9 cut(s) 141, 183, 275, 316, 378, 429, 500, 513, 536
Sfr303I CCGCGG 1 cut(s) 382
SfuI TTCGAA 1 cut(s) 202
SgrBI CCGCGG 1 cut(s) 382
SinI GGWCC 1 cut(s) 115
Sse9I AATT 6 cut(s) 54, 59, 87, 289, 484, 564
SsiI CCGC 6 cut(s) 46, 363, 379, 381, 396, 553
StyI CCWWGG 1 cut(s) 358
TaaI ACNGT 6 cut(s) 35, 146, 187, 215, 224, 339
TaiI ACGT 4 cut(s) 141, 275, 316, 500
TaqI TCGA 3 cut(s) 202, 281, 386
TasI AATT 6 cut(s) 54, 59, 87, 289, 484, 564
TatI WGTACW 1 cut(s) 444
TauI GCSGC 1 cut(s) 555
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 3 cut(s) 38, 163, 529
TseI GCWGC 1 cut(s) 38
TspRI CASTG 3 cut(s) 38, 163, 529
Van91I CCANNNNNTGG 1 cut(s) 274
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 2 cut(s) 484, 564
XceI RCATGY 1 cut(s) 436
XmiI GTMKAC 1 cut(s) 494
XmnI GAANNNNTTC 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.