RLG00000027849
ERF Family

A domain family that is part of the cupin metalloenzyme superfamily.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002674
Physical Location & Seq
Forward (+)
16037795 .. 16047840
10046 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027849

Sequence Viewer

Length: 3357 bp
ATGGAATCAACGCCGCCGCACGACCGCCGGTGCGAGCCCATCGCCGGCCAGAAGTCGCGGCCGGGCGAGCTCAAGAGCGACGGGGATAAGAAGATCAAGAGAGACAGTGAAGTGGTCGAGGAGGATCGCCGCTGCAATCGCCGCGCCGGAGCGTGGCGGTGTGGCGAGGCGGCGGCGGCTGGGAAGCCGATGTGTCGACATCACTTGGCGCAGAGCAAGAGTTACCAGGAGAGGAAGAAGAAGAGAGAGGGAAGCGGTGACAGTGATTCCGGCGAAGAAGACGGACGTGACCGGAAAATCAACGCCGGCGGATCGGAGAATAAGAAGAAGAAGAGGAGGAGGAGGACCGCGAGTGAGTCTGAATCGGAGTCGGAGCACAGGTCGAGGAATCGGACTGTGAAAGCGAAGGTGAATGGTAAATCTGCAGATTCCGGTAGTGTTATGAAGAAGAGTAAACTAAACGAGGAAAAGCCAATGGAAAAGGGTAAGTCTAACAAAATCAAGGGGAGCTTGATGTGTCACCAGTGTCAGCGGAACGATAAGAGTGGTGTTGTACACTGCTCTCTGTGTAAATCTAAGCGGTTTTGCTATGAGTGCATTGAAAGATGGTACCCTGGGAAATCAAGAGAGGAATTTGAGGATGCTTGCCCATTTTGCCGTGGCAACTGCAACTGCAAAGCGTGCCTGCGCGAGTTTTTGGTTAAACCTTGCCGAGAAGTTGAGCCCAGTGTTAAGCTACAGCGACTGCGTTACCTGTTATATAAGGCTTTGCCTGTGCTGAGGCATATATATAGTGAGCAGAGCTCTGAACTGGAGATAGAAGCCAAAATCAGAGGTGTACACTTGACTGAAATGGACATAAAGAGAACTAAAGTACACCAAAAGGAGCGAATGTACTGTGACAATTGTTCTACATCTATTGTGGATTTCCACAGAAGCTGTCCAAACCCCAATTGTTCCTATGACCTGTGTCTTACTTGTTGCAAAGAGCTAAGGGATGGTCGGCAACCTGGAGGTAATGAAGGAGAAACATCTCACCAGCAAGCTCTAGAAAGAGCTCATAAAGAAGTGAAAGGACATTGCTGGGAGAGTAAAGTTGCCTCTACTTCTGATGATTCTAAAGTGGACCCATCCATTTCTTTTCCTAATTGGAGAGCTGATTCTGATGGCAGTATTCCATGCCCTCCAAAAGAACGTGGAGGTTGTGGCAATGCGAAGCTGGAATTGAAGCGTAAATTCAAAGCTAATTGGGTAATGAAGCTGCTAAAAAATGCAGAAGATGTTACTACTGACTTCAAGTGGCAAGAAGTTGATATTTCTCAAGGATGTTCCTGGTGCCAGCCAAATGATTCCGAGGAAACCAATGATAGGAAGCCTGAAAGGAGGCAAGCAGCTTTCAGGAAAAACAGTCATGATAACTTCTTATACTGTCCAGATGCTATTGACATTTCAGACGATGAGATCGAGCATTTTCAGAGGCACTGGATGAAAGGGGAACCGGTGATTGTCAGAAATGTTCTTGACAAGACATCTGGTCTTAGTTGGGAACCTATGGTTATGTGGAGGGCTTTTAGAGAAACGGGTGCTAAAGTAAAGTTCAAAGAGGAGACTAAAAGTGTAAAAGCCATTGATTGCTTGGATTGGAATGAGGTTGAGATTAATATTCACCAATTTTTCGCGGGCTACTTAGCGGGTCGCATGCATAAAGATAAGTGGCCAGAGATGTTAAAATTAAAGGATTGGCCATCATCAACTTTGTTTGAGGAACGCTTGCCAAGACACTGTGCAGAATTCATTGCAGCGCTCCCCTACAGTGACTATACTGATCCCAAAGATTCAAATGCTGGTATTCTCAATCTTGCTACAAGACTTCCTGAAGGGTCGCTGAAACCTGATATGGGACCAAAAACATACATTGCTTATGGATTCTCCGAAGAGCTTGGTAGAGGTGATTCAGTGACTAAGCTGCACTGCGATATGTCTGATGCGGTAAATGTTCTGACACACACAGCAACAGTGAAGATTGAGCCATGGCAGCACAATTCCATAAAGAATTTGAAGAGCAAACATGAAGCTGAAGACCTTTGTGGACTCTACAATGAAAAAAATCACAAAAAGGGCAGGGTTAGAGGAACATTGCTGAAGAAAACTCGCAACATCCTGGTTAAGGGTGCTGATTCTTCTGAATATACTAAAAGTGGTAAAGTTGTGGAGAATGACCATCTAGTGTCAACTCTGCAGGATGGGAAGGGAAACAAACTGGACAGAGCACAATCATGTAGAACTTCACTTTTGTCAGATTCTGTCGATCCAGGCATCCTTAGATCTGATGAAACAGAATATGTTCCGGAGGTTCTTGCTACTACTGAACTAAATGAAGTAAAGGTTGCGAGTGTTGATCATCAGAGGAATGATGTGCTAAAATCCACCTCGCCTCGTGCAAATGGAGTTGAAAAAGAGCAAGAGCGTGTTCAATGTTCCAGTGACATGATCAGTGGAAGGCTTGAAGGGAAAGATGCTTCAAGGGATGCAAGTGTAAACATGCATGCAACAAAGGATTTCAAAGGTAGTGACGAGTTGGACATTGTCCATGGTGGTGCTGTTTGGGACATCTTTCGTATCCGGGACACTCCCAAGTTAATAGAGTACCTGGAGAAATACAAAAAAGAATTTCGCCACCTTAATAATCATCCTGTAGATTCTGTTGTTCATCCTATTCATGATCAGACTCTGTACTTGAATGAGAGACATAAGAAACAACTAAAGGAGGAGTTCGATGTGGAGCCTTGGACATTTGAGCAACATCTTGGTGAGGCAGTTTTTATTCCAGCGGGATGTCCTCATCAAGTGAGAAATAGACAATCTTGTATAAAGGTAGCACTTGATTTTGTATCTCCTGAGAATCTTGAAGTGTGTCTGCGATTAACTGAAGAGTTCCGTTTACTCCCAAAAACCCACAGAGCCAAGGAAGATAAATTGGAGGTGAAGAAGATGACACTCTATGCTGTAAGTTCAGCACTGCGAGAAGCCAAAATTTTGATGCTGGGGCTTGGTTCAAGAGTAGGGAGGAAGCCGCAACAATTTGTTGACAACAACACCAAAGAGAAGGTGGAGTTGTTGATCAAGTGCATCACTTTCTTCCAAGAACGTCAAATGCAGAGAAAGATGACAAGCAATACTGAAATTGGCAGCGGTGGGCACGGTGGTTGGCGGTATACAGCGCCGTGGTCTACAATTGTTGGCTTGCTCTGGTATCTTCAGGCGATGTGTGGTGGTCTGCTATTGGAGGGGATGTGCAAAAGTTTTTCGTACTACGGCGGCGGCCTTGCCTTTGGGCAAGGCTTTGTAGTTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC WRC zf-4CXXC_R1

Protein Analysis

1119

Amino Acids

127.36

Weight (kDa)

8.7

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjC PF02373 867 - 963 1.8e-14 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 609
AccB1I GGYRCC 2 cut(s) 609, 1335
AccI GTMKAC 3 cut(s) 196, 3215, 3230
AccII CGCG 5 cut(s) 58, 144, 350, 690, 1679
AccIII TCCGGA 1 cut(s) 2347
AclWI GGATC 4 cut(s) 132, 319, 1820, 2303
AcoI YGGCCR 4 cut(s) 46, 59, 1715, 1742
AcsI RAATTY 6 cut(s) 632, 1235, 1790, 2053, 2669, 3033
AcuI CTGAAG 5 cut(s) 1896, 2097, 2162, 2949, 3242
AfaI GTAC 8 cut(s) 555, 611, 840, 876, 896, 2648, 2735, 3311
AfeI AGCGCT 1 cut(s) 1803
AfiI CCNNNNNNNGG 5 cut(s) 44, 153, 1368, 1898, 2167
AgeI ACCGGT 1 cut(s) 1498
AhdI GACNNNNNGTC 1 cut(s) 1533
AjiI CACGTC 1 cut(s) 287
AjnI CCWGG 7 cut(s) 225, 613, 1009, 1331, 2160, 2311, 2649
Alw21I GWGCWC 5 cut(s) 72, 378, 806, 1060, 2272
Alw26I GTCTC 3 cut(s) 96, 1601, 2740
AlwI GGATC 4 cut(s) 132, 319, 1820, 2303
AlwNI CAGNNNCTG 4 cut(s) 745, 939, 2303, 2731
Aor13HI TCCGGA 1 cut(s) 2347
Aor51HI AGCGCT 1 cut(s) 1803
AoxI GGCC 5 cut(s) 46, 59, 1715, 1742, 3322
ApeKI GCWGC 7 cut(s) 132, 1261, 1391, 1799, 1966, 2035, 3189
ApoI RAATTY 6 cut(s) 632, 1235, 1790, 2053, 2669, 3033
AseI ATTAAT 1 cut(s) 1659
AsiGI ACCGGT 1 cut(s) 1498
Asp700I GAANNNNTTC 1 cut(s) 2343
Asp718I GGTACC 1 cut(s) 609
AspLEI GCGC 5 cut(s) 146, 211, 690, 1804, 3223
AspS9I GGNCC 3 cut(s) 345, 1126, 1901
AsuC2I CCSGG 2 cut(s) 63, 2624
AsuHPI GGTGA 9 cut(s) 269, 421, 512, 1028, 1513, 1658, 1961, 2822, 2995
AvaII GGWCC 3 cut(s) 345, 1126, 1901
BaeGI GKGCMC 1 cut(s) 3201
BalI TGGCCA 2 cut(s) 1717, 1744
BanI GGYRCC 2 cut(s) 609, 1335
BanII GRGCYC 5 cut(s) 39, 72, 726, 806, 1060
BauI CACGAG 1 cut(s) 2436
BbsI GAAGAC 2 cut(s) 285, 2085
Bbv12I GWGCWC 5 cut(s) 72, 378, 806, 1060, 2272
BbvCI CCTCAGC 1 cut(s) 779
BbvI GCAGC 7 cut(s) 119, 1248, 1403, 1811, 1953, 2047, 3201
BccI CCATC 8 cut(s) 47, 600, 992, 1138, 1160, 1753, 2229, 2237
BceAI ACGGC 3 cut(s) 642, 3208, 3331
BciT130I CCWGG 7 cut(s) 227, 615, 1011, 1333, 2162, 2313, 2651
BciVI GTATCC 1 cut(s) 2630
BclI TGATCA 4 cut(s) 2398, 2490, 2722, 3120
BcnI CCSGG 2 cut(s) 63, 2624
BcoDI GTCTC 3 cut(s) 96, 1601, 2740
BfaI CTAG 2 cut(s) 1049, 2225
BfmI CTRYAG 5 cut(s) 423, 737, 1810, 2237, 2694
BfoI RGCGCY 2 cut(s) 1805, 3224
BfuI GTATCC 1 cut(s) 2630
BglII AGATCT 1 cut(s) 2324
Bme1390I CCNGG 9 cut(s) 63, 227, 615, 1011, 1333, 2162, 2313, 2624, 2651
Bme18I GGWCC 3 cut(s) 345, 1126, 1901
BmeRI GACNNNNNGTC 1 cut(s) 1533
BmgBI CACGTC 1 cut(s) 287
BmgT120I GGNCC 3 cut(s) 345, 1126, 1901
BmiI GGNNCC 7 cut(s) 611, 1128, 1337, 1497, 1548, 1902, 2784
BmrFI CCNGG 9 cut(s) 63, 227, 615, 1011, 1333, 2162, 2313, 2624, 2651
BmrI ACTGGG 1 cut(s) 720
BmsI GCATC 8 cut(s) 631, 1426, 1975, 2325, 2506, 2518, 3030, 3138
BmuI ACTGGG 1 cut(s) 720
BoxI GACNNNNGTC 1 cut(s) 969
BpiI GAAGAC 2 cut(s) 285, 2085
BplI GAGNNNNNCTC 2 cut(s) 788, 820
BpmI CTGGAG 3 cut(s) 833, 1032, 2672
Bpu10I CCTNAGC 2 cut(s) 779, 992
BpuEI CTTGAG 2 cut(s) 56, 1305
BpuMI CCSGG 2 cut(s) 63, 2624
BsaJI CCNNGG 9 cut(s) 613, 614, 658, 1353, 2030, 2590, 2786, 2964, 3224
BsaWI WCCGGW 4 cut(s) 291, 431, 1498, 2347
BsaXI ACNNNNNCTCC 6 cut(s) 365, 395, 878, 908, 3278, 3308
Bsc4I CCNNNNNNNGG 5 cut(s) 44, 153, 1368, 1898, 2167
Bse118I RCCGGY 4 cut(s) 27, 44, 305, 1498
Bse1I ACTGG 6 cut(s) 523, 726, 816, 1487, 2265, 2481
Bse3DI GCAATG 5 cut(s) 1078, 1216, 1794, 1914, 2135
BseAI TCCGGA 1 cut(s) 2347
BseBI CCWGG 7 cut(s) 227, 615, 1011, 1333, 2162, 2313, 2651
BseDI CCNNGG 9 cut(s) 613, 614, 658, 1353, 2030, 2590, 2786, 2964, 3224
BseLI CCNNNNNNNGG 5 cut(s) 44, 153, 1368, 1898, 2167
BseMI GCAATG 5 cut(s) 1078, 1216, 1794, 1914, 2135
BseMII CTCAG 2 cut(s) 770, 2889
BseNI ACTGG 6 cut(s) 523, 726, 816, 1487, 2265, 2481
BseRI GAGGAG 6 cut(s) 134, 349, 352, 355, 1619, 2783
BseSI GKGCMC 1 cut(s) 3201
BseX3I CGGCCG 1 cut(s) 59
BseXI GCAGC 7 cut(s) 119, 1248, 1403, 1811, 1953, 2047, 3201
BseYI CCCAGC 3 cut(s) 179, 1083, 3043
BsgI GTGCAG 2 cut(s) 1806, 1952
Bsh1236I CGCG 5 cut(s) 58, 144, 350, 690, 1679
Bsh1285I CGRYCG 2 cut(s) 25, 62
BshFI GGCC 5 cut(s) 48, 61, 1717, 1744, 3324
BshNI GGYRCC 2 cut(s) 609, 1335
BshTI ACCGGT 1 cut(s) 1498
BsiEI CGRYCG 2 cut(s) 25, 62
BsiHKAI GWGCWC 5 cut(s) 72, 378, 806, 1060, 2272
BslFI GGGAC 3 cut(s) 1914, 2621, 2639
BslI CCNNNNNNNGG 5 cut(s) 44, 153, 1368, 1898, 2167
BsmAI GTCTC 3 cut(s) 96, 1601, 2740
BsmFI GGGAC 3 cut(s) 1914, 2621, 2639
BsnI GGCC 5 cut(s) 48, 61, 1717, 1744, 3324
Bsp1286I GDGCHC 8 cut(s) 39, 72, 378, 726, 806, 1060, 2272, 3201
Bsp13I TCCGGA 1 cut(s) 2347
Bsp1407I TGTACA 2 cut(s) 553, 838
Bsp19I CCATGG 2 cut(s) 2030, 2590
BspANI GGCC 5 cut(s) 48, 61, 1717, 1744, 3324
BspCNI CTCAG 2 cut(s) 771, 2890
BspEI TCCGGA 1 cut(s) 2347
BspFNI CGCG 5 cut(s) 58, 144, 350, 690, 1679
BspHI TCATGA 2 cut(s) 1411, 2719
BspLI GGNNCC 7 cut(s) 611, 1128, 1337, 1497, 1548, 1902, 2784
BspMAI CTGCAG 2 cut(s) 427, 2241
BspPI GGATC 4 cut(s) 132, 319, 1820, 2303
BspQI GCTCTTC 2 cut(s) 1929, 2054
BspT107I GGYRCC 2 cut(s) 609, 1335
BsrDI GCAATG 5 cut(s) 1078, 1216, 1794, 1914, 2135
BsrFI RCCGGY 4 cut(s) 27, 44, 305, 1498
BsrGI TGTACA 2 cut(s) 553, 838
BsrI ACTGG 6 cut(s) 523, 726, 816, 1487, 2265, 2481
BssAI RCCGGY 4 cut(s) 27, 44, 305, 1498
BssECI CCNNGG 9 cut(s) 613, 614, 658, 1353, 2030, 2590, 2786, 2964, 3224
BssNAI GTATAC 1 cut(s) 3216
BssSI CACGAG 1 cut(s) 2436
BssT1I CCWWGG 4 cut(s) 2030, 2590, 2786, 2964
Bst1107I GTATAC 1 cut(s) 3216
Bst2BI CACGAG 1 cut(s) 2436
Bst2UI CCWGG 7 cut(s) 227, 615, 1011, 1333, 2162, 2313, 2651
Bst6I CTCTTC 6 cut(s) 236, 326, 443, 1929, 2054, 2925
BstAPI GCANNNNNTGC 1 cut(s) 681
BstAUI TGTACA 2 cut(s) 553, 838
BstDEI CTNAG 8 cut(s) 576, 779, 992, 1538, 1687, 1962, 2321, 2898
BstDSI CCRYGG 4 cut(s) 658, 2030, 2590, 3224
BstENI CCTNNNNNAGG 1 cut(s) 2165
BstFNI CGCG 5 cut(s) 58, 144, 350, 690, 1679
BstH2I RGCGCY 2 cut(s) 1805, 3224
BstHHI GCGC 5 cut(s) 146, 211, 690, 1804, 3223
BstMAI GTCTC 3 cut(s) 96, 1601, 2740
BstMCI CGRYCG 2 cut(s) 25, 62
BstMWI GCNNNNNNNGC 8 cut(s) 67, 138, 141, 176, 594, 654, 681, 2035
BstNI CCWGG 7 cut(s) 227, 615, 1011, 1333, 2162, 2313, 2651
BstNSI RCATGY 3 cut(s) 1702, 2545, 2549
BstPAI GACNNNNGTC 1 cut(s) 969
BstSCI CCNGG 9 cut(s) 61, 225, 613, 1009, 1331, 2160, 2311, 2622, 2649
BstSFI CTRYAG 5 cut(s) 423, 737, 1810, 2237, 2694
BstSLI GKGCMC 1 cut(s) 3201
BstUI CGCG 5 cut(s) 58, 144, 350, 690, 1679
BstV1I GCAGC 7 cut(s) 119, 1248, 1403, 1811, 1953, 2047, 3201
BstV2I GAAGAC 2 cut(s) 285, 2085
BstX2I RGATCY 1 cut(s) 2324
BstYI RGATCY 1 cut(s) 2324
BstZ17I GTATAC 1 cut(s) 3216
BstZI CGGCCG 1 cut(s) 59
BsuI GTATCC 1 cut(s) 2630
BsuRI GGCC 5 cut(s) 48, 61, 1717, 1744, 3324
BtgI CCRYGG 4 cut(s) 658, 2030, 2590, 3224
BtgZI GCGATG 2 cut(s) 25, 3278
BtrI CACGTC 1 cut(s) 287
BtsI GCAGTG 3 cut(s) 556, 1969, 3017
CaiI CAGNNNCTG 4 cut(s) 745, 939, 2303, 2731
CciI TCATGA 2 cut(s) 1411, 2719
CfoI GCGC 5 cut(s) 146, 211, 690, 1804, 3223
Cfr10I RCCGGY 4 cut(s) 27, 44, 305, 1498
Cfr13I GGNCC 3 cut(s) 345, 1126, 1901
Csp6I GTAC 8 cut(s) 554, 610, 839, 875, 895, 2647, 2734, 3310
CspAI ACCGGT 1 cut(s) 1498
CviQI GTAC 8 cut(s) 554, 610, 839, 875, 895, 2647, 2734, 3310
DdeI CTNAG 8 cut(s) 576, 779, 992, 1538, 1687, 1962, 2321, 2898
DriI GACNNNNNGTC 1 cut(s) 1533
EaeI YGGCCR 4 cut(s) 46, 59, 1715, 1742
EagI CGGCCG 1 cut(s) 59
Eam1104I CTCTTC 6 cut(s) 236, 326, 443, 1929, 2054, 2925
Eam1105I GACNNNNNGTC 1 cut(s) 1533
EarI CTCTTC 6 cut(s) 236, 326, 443, 1929, 2054, 2925
EciI GGCGGA 1 cut(s) 324
Ecl136II GAGCTC 3 cut(s) 70, 804, 1058
EclXI CGGCCG 1 cut(s) 59
Eco130I CCWWGG 4 cut(s) 2030, 2590, 2786, 2964
Eco24I GRGCYC 5 cut(s) 39, 72, 726, 806, 1060
Eco47I GGWCC 3 cut(s) 345, 1126, 1901
Eco47III AGCGCT 1 cut(s) 1803
Eco52I CGGCCG 1 cut(s) 59
Eco53kI GAGCTC 3 cut(s) 70, 804, 1058
Eco57I CTGAAG 5 cut(s) 1896, 2097, 2162, 2949, 3242
EcoICRI GAGCTC 3 cut(s) 70, 804, 1058
EcoNI CCTNNNNNAGG 1 cut(s) 2165
EcoRI GAATTC 1 cut(s) 1790
EcoRII CCWGG 7 cut(s) 225, 613, 1009, 1331, 2160, 2311, 2649
EcoT14I CCWWGG 4 cut(s) 2030, 2590, 2786, 2964
EcoT22I ATGCAT 2 cut(s) 1704, 2547
EcoT38I GRGCYC 5 cut(s) 39, 72, 726, 806, 1060
ErhI CCWWGG 4 cut(s) 2030, 2590, 2786, 2964
FalI AAGNNNNNCTT 2 cut(s) 494, 526
FaqI GGGAC 3 cut(s) 1914, 2621, 2639
FauI CCCGC 3 cut(s) 1672, 1684, 2824
FbaI TGATCA 4 cut(s) 2398, 2490, 2722, 3120
FblI GTMKAC 3 cut(s) 196, 3215, 3230
FriOI GRGCYC 5 cut(s) 39, 72, 726, 806, 1060
FspBI CTAG 2 cut(s) 1049, 2225
GlaI GCGC 5 cut(s) 145, 210, 689, 1803, 3222
GsaI CCCAGC 3 cut(s) 183, 1087, 3047
GsuI CTGGAG 3 cut(s) 833, 1032, 2672
HaeII RGCGCY 2 cut(s) 1805, 3224
HaeIII GGCC 5 cut(s) 48, 61, 1717, 1744, 3324
HhaI GCGC 5 cut(s) 146, 211, 690, 1804, 3223
Hin6I GCGC 5 cut(s) 144, 209, 688, 1802, 3221
HinP1I GCGC 5 cut(s) 144, 209, 688, 1802, 3221
HincII GTYRAC 3 cut(s) 197, 2232, 3088
HindII GTYRAC 3 cut(s) 197, 2232, 3088
HphI GGTGA 9 cut(s) 269, 421, 512, 1028, 1513, 1658, 1961, 2822, 2995
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 7 cut(s) 400, 1016, 1871, 2242, 2493, 2501, 3100
HpyCH4IV ACGT 3 cut(s) 286, 1195, 3148
HpyF10VI GCNNNNNNNGC 8 cut(s) 67, 138, 141, 176, 594, 654, 681, 2035
HpyF3I CTNAG 8 cut(s) 576, 779, 992, 1538, 1687, 1962, 2321, 2898
HpySE526I ACGT 3 cut(s) 286, 1195, 3148
HspAI GCGC 5 cut(s) 144, 209, 688, 1802, 3221
Kpn2I TCCGGA 1 cut(s) 2347
KpnI GGTACC 1 cut(s) 613
KroI GCCGGC 2 cut(s) 44, 305
KroNI GCCGGC 2 cut(s) 46, 307
Ksp22I TGATCA 4 cut(s) 2398, 2490, 2722, 3120
LguI GCTCTTC 2 cut(s) 1929, 2054
LmnI GCTCC 6 cut(s) 149, 373, 507, 886, 1809, 2782
Lsp1109I GCAGC 7 cut(s) 119, 1248, 1403, 1811, 1953, 2047, 3201
LweI GCATC 8 cut(s) 631, 1426, 1975, 2325, 2506, 2518, 3030, 3138
MaeI CTAG 2 cut(s) 1049, 2225
MaeII ACGT 3 cut(s) 286, 1195, 3148
MfeI CAATTG 3 cut(s) 904, 952, 3234
MflI RGATCY 1 cut(s) 2324
MhlI GDGCHC 8 cut(s) 39, 72, 378, 726, 806, 1060, 2272, 3201
MlsI TGGCCA 2 cut(s) 1717, 1744
MluNI TGGCCA 2 cut(s) 1717, 1744
MlyI GAGTC 4 cut(s) 365, 377, 2085, 2722
MmeI TCCRAC 2 cut(s) 351, 2559
Mox20I TGGCCA 2 cut(s) 1717, 1744
Mph1103I ATGCAT 2 cut(s) 1704, 2547
MreI CGCCGGCG 1 cut(s) 305
MroI TCCGGA 1 cut(s) 2347
MroNI GCCGGC 2 cut(s) 44, 305
MroXI GAANNNNTTC 1 cut(s) 2343
MscI TGGCCA 2 cut(s) 1717, 1744
MseI TTAA 9 cut(s) 702, 732, 1659, 1727, 1733, 2166, 2639, 2682, 2924
MslI CAYNNNNRTG 3 cut(s) 2275, 2595, 2808
Msp20I TGGCCA 2 cut(s) 1717, 1744
MspA1I CMGCKG 4 cut(s) 132, 532, 2831, 3192
MspR9I CCNGG 9 cut(s) 63, 227, 615, 1011, 1333, 2162, 2313, 2624, 2651
MunI CAATTG 3 cut(s) 904, 952, 3234
MvaI CCWGG 7 cut(s) 227, 615, 1011, 1333, 2162, 2313, 2651
MvnI CGCG 5 cut(s) 58, 144, 350, 690, 1679
MwoI GCNNNNNNNGC 8 cut(s) 67, 138, 141, 176, 594, 654, 681, 2035
NaeI GCCGGC 2 cut(s) 46, 307
NciI CCSGG 2 cut(s) 63, 2624
NcoI CCATGG 2 cut(s) 2030, 2590
NgoMIV GCCGGC 2 cut(s) 44, 305
NlaIV GGNNCC 7 cut(s) 611, 1128, 1337, 1497, 1548, 1902, 2784
NmeAIII GCCGAG 1 cut(s) 737
NmuCI GTSAC 8 cut(s) 257, 287, 518, 899, 1814, 1957, 2483, 2570
NsiI ATGCAT 2 cut(s) 1704, 2547
NspI RCATGY 3 cut(s) 1702, 2545, 2549
PaeI GCATGC 2 cut(s) 1702, 2549
PagI TCATGA 2 cut(s) 1411, 2719
PasI CCCWGGG 1 cut(s) 614
PciSI GCTCTTC 2 cut(s) 1929, 2054
PcsI WCGNNNNNNNCGW 1 cut(s) 1461
PdiI GCCGGC 2 cut(s) 46, 307
PdmI GAANNNNTTC 1 cut(s) 2343
PflFI GACNNNGTC 1 cut(s) 2585
PfoI TCCNGGA 1 cut(s) 2622
PinAI ACCGGT 1 cut(s) 1498
PleI GAGTC 4 cut(s) 364, 376, 2085, 2722
PpsI GAGTC 4 cut(s) 364, 376, 2085, 2722
PshAI GACNNNNGTC 1 cut(s) 969
PshBI ATTAAT 1 cut(s) 1659
Psp124BI GAGCTC 3 cut(s) 72, 806, 1060
Psp6I CCWGG 7 cut(s) 225, 613, 1009, 1331, 2160, 2311, 2649
PspFI CCCAGC 3 cut(s) 179, 1083, 3043
PspGI CCWGG 7 cut(s) 225, 613, 1009, 1331, 2160, 2311, 2649
PspN4I GGNNCC 7 cut(s) 611, 1128, 1337, 1497, 1548, 1902, 2784
PspPI GGNCC 3 cut(s) 345, 1126, 1901
PstI CTGCAG 2 cut(s) 427, 2241
PstNI CAGNNNCTG 4 cut(s) 745, 939, 2303, 2731
PsuI RGATCY 1 cut(s) 2324
PsyI GACNNNGTC 1 cut(s) 2585
RsaI GTAC 8 cut(s) 555, 611, 840, 876, 896, 2648, 2735, 3311
RsaNI GTAC 8 cut(s) 554, 610, 839, 875, 895, 2647, 2734, 3310
RseI CAYNNNNRTG 3 cut(s) 2275, 2595, 2808
SacI GAGCTC 3 cut(s) 72, 806, 1060
SalI GTCGAC 1 cut(s) 195
SapI GCTCTTC 2 cut(s) 1929, 2054
SaqAI TTAA 9 cut(s) 702, 732, 1659, 1727, 1733, 2166, 2639, 2682, 2924
Sau96I GGNCC 3 cut(s) 345, 1126, 1901
SchI GAGTC 4 cut(s) 365, 377, 2085, 2722
ScrFI CCNGG 9 cut(s) 63, 227, 615, 1011, 1333, 2162, 2313, 2624, 2651
SduI GDGCHC 8 cut(s) 39, 72, 378, 726, 806, 1060, 2272, 3201
SfaNI GCATC 8 cut(s) 631, 1426, 1975, 2325, 2506, 2518, 3030, 3138
SfcI CTRYAG 5 cut(s) 423, 737, 1810, 2237, 2694
SgrAI CRCCGGYG 2 cut(s) 27, 305
SinI GGWCC 3 cut(s) 345, 1126, 1901
SmiMI CAYNNNNRTG 3 cut(s) 2275, 2595, 2808
SmlI CTYRAG 2 cut(s) 71, 1320
SmoI CTYRAG 2 cut(s) 71, 1320
SphI GCATGC 2 cut(s) 1702, 2549
SspI AATATT 1 cut(s) 1663
SspMI CTAG 2 cut(s) 1049, 2225
SstI GAGCTC 3 cut(s) 72, 806, 1060
StyD4I CCNGG 9 cut(s) 61, 225, 613, 1009, 1331, 2160, 2311, 2622, 2649
StyI CCWWGG 4 cut(s) 2030, 2590, 2786, 2964
TaiI ACGT 3 cut(s) 289, 1198, 3151
TaqI TCGA 6 cut(s) 117, 196, 383, 1464, 2307, 2775
TatI WGTACW 5 cut(s) 553, 838, 874, 894, 2733
Tru1I TTAA 9 cut(s) 702, 732, 1659, 1727, 1733, 2166, 2639, 2682, 2924
Tru9I TTAA 9 cut(s) 702, 732, 1659, 1727, 1733, 2166, 2639, 2682, 2924
TseFI GTSAC 8 cut(s) 257, 287, 518, 899, 1814, 1957, 2483, 2570
TseI GCWGC 7 cut(s) 132, 1261, 1391, 1799, 1966, 2035, 3189
Tsp45I GTSAC 8 cut(s) 257, 287, 518, 899, 1814, 1957, 2483, 2570
TspGWI ACGGA 2 cut(s) 297, 2927
Tth111I GACNNNGTC 1 cut(s) 2585
VpaK11BI GGWCC 3 cut(s) 345, 1126, 1901
VspI ATTAAT 1 cut(s) 1659
XagI CCTNNNNNAGG 1 cut(s) 2165
XapI RAATTY 6 cut(s) 632, 1235, 1790, 2053, 2669, 3033
XbaI TCTAGA 1 cut(s) 1048
XceI RCATGY 3 cut(s) 1702, 2545, 2549
XcmI CCANNNNNNNNNTGG 2 cut(s) 1633, 3106
XmiI GTMKAC 3 cut(s) 196, 3215, 3230
XmnI GAANNNNTTC 1 cut(s) 2343
XspI CTAG 2 cut(s) 1049, 2225
Zsp2I ATGCAT 2 cut(s) 1704, 2547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.