A domain family that is part of the cupin metalloenzyme superfamily.
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G00990 |
| fragaria_vesca | FvH4_7g16681 FvH4_7g16681 FvH4_7g16681 FvH4_7g16681 FvH4_7g16681 |
| malus_domestica | MD01G1082300.v1.1 |
| prunus_persica | Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 Prupe.2G189600_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr1g0359841 |
| rosa_laevigata | RLG00000027849 |
| rosa_multiflora | Rmu_sc0003191.1_g000008 Rmu_ssc0000371.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00296770 |
| rosa_rugosa | Rorug01G0273000 |
| rosa_samantha | Rh1AG287100 Rh1BG252900 Rh1DG281900 |
| rosa_wichuraiana | Rw1G025500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 612 |
| AccB1I | GGYRCC | 2 cut(s) | 612, 1338 |
| AccI | GTMKAC | 1 cut(s) | 196 |
| AccII | CGCG | 5 cut(s) | 39, 58, 144, 353, 693 |
| AccIII | TCCGGA | 1 cut(s) | 2350 |
| AclWI | GGATC | 4 cut(s) | 132, 319, 1823, 2306 |
| AcoI | YGGCCR | 2 cut(s) | 1718, 1745 |
| AcsI | RAATTY | 5 cut(s) | 635, 1238, 1793, 2672, 3037 |
| AcuI | CTGAAG | 3 cut(s) | 1899, 2100, 2952 |
| AfaI | GTAC | 7 cut(s) | 558, 614, 843, 879, 899, 2651, 2738 |
| AfeI | AGCGCT | 1 cut(s) | 1806 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 148, 153, 1371, 1901, 2170, 3053 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1536 |
| AjiI | CACGTC | 1 cut(s) | 287 |
| AjnI | CCWGG | 8 cut(s) | 225, 616, 1012, 1334, 2163, 2314, 2625, 2652 |
| Alw21I | GWGCWC | 5 cut(s) | 72, 381, 809, 1063, 2275 |
| Alw26I | GTCTC | 5 cut(s) | 46, 96, 252, 1604, 2743 |
| AlwI | GGATC | 4 cut(s) | 132, 319, 1823, 2306 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 748, 942, 2306, 2734 |
| Aor13HI | TCCGGA | 1 cut(s) | 2350 |
| Aor51HI | AGCGCT | 1 cut(s) | 1806 |
| AoxI | GGCC | 4 cut(s) | 46, 59, 1718, 1745 |
| ApeKI | GCWGC | 6 cut(s) | 132, 1264, 1394, 1802, 1969, 2038 |
| ApoI | RAATTY | 5 cut(s) | 635, 1238, 1793, 2672, 3037 |
| AseI | ATTAAT | 1 cut(s) | 1662 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2346 |
| Asp718I | GGTACC | 1 cut(s) | 612 |
| AspLEI | GCGC | 5 cut(s) | 39, 146, 211, 693, 1807 |
| AspS9I | GGNCC | 5 cut(s) | 47, 60, 348, 1129, 1904 |
| AsuC2I | CCSGG | 3 cut(s) | 63, 148, 3048 |
| AsuHPI | GGTGA | 8 cut(s) | 95, 424, 515, 1031, 1661, 1964, 2825, 2998 |
| AvaII | GGWCC | 3 cut(s) | 348, 1129, 1904 |
| BalI | TGGCCA | 2 cut(s) | 1720, 1747 |
| BanI | GGYRCC | 2 cut(s) | 612, 1338 |
| BanII | GRGCYC | 4 cut(s) | 72, 729, 809, 1063 |
| BbsI | GAAGAC | 2 cut(s) | 285, 2088 |
| Bbv12I | GWGCWC | 5 cut(s) | 72, 381, 809, 1063, 2275 |
| BbvCI | CCTCAGC | 1 cut(s) | 782 |
| BbvI | GCAGC | 6 cut(s) | 119, 1251, 1406, 1814, 1956, 2050 |
| BccI | CCATC | 6 cut(s) | 603, 995, 1141, 1756, 2232, 2240 |
| BceAI | ACGGC | 2 cut(s) | 645, 2017 |
| BciT130I | CCWGG | 8 cut(s) | 227, 618, 1014, 1336, 2165, 2316, 2627, 2654 |
| BciVI | GTATCC | 1 cut(s) | 2633 |
| BclI | TGATCA | 1 cut(s) | 2493 |
| BcnI | CCSGG | 3 cut(s) | 63, 148, 3048 |
| BcoDI | GTCTC | 5 cut(s) | 46, 96, 252, 1604, 2743 |
| BfaI | CTAG | 3 cut(s) | 1052, 2228, 2264 |
| BfmI | CTRYAG | 4 cut(s) | 426, 1813, 2240, 2697 |
| BfoI | RGCGCY | 1 cut(s) | 1808 |
| BfuI | GTATCC | 1 cut(s) | 2633 |
| BglII | AGATCT | 1 cut(s) | 2327 |
| Bme18I | GGWCC | 3 cut(s) | 348, 1129, 1904 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1536 |
| BmgBI | CACGTC | 1 cut(s) | 287 |
| BmgT120I | GGNCC | 5 cut(s) | 47, 60, 348, 1129, 1904 |
| BmiI | GGNNCC | 8 cut(s) | 614, 1131, 1340, 1500, 1551, 1905, 2355, 2787 |
| BmrI | ACTGGG | 1 cut(s) | 723 |
| BmsI | GCATC | 7 cut(s) | 634, 1429, 1978, 2328, 2509, 2521, 3033 |
| BmuI | ACTGGG | 1 cut(s) | 723 |
| BoxI | GACNNNNGTC | 1 cut(s) | 972 |
| BpiI | GAAGAC | 2 cut(s) | 285, 2088 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 791, 823 |
| BpmI | CTGGAG | 3 cut(s) | 836, 1035, 2675 |
| Bpu10I | CCTNAGC | 2 cut(s) | 782, 995 |
| BpuEI | CTTGAG | 2 cut(s) | 56, 1308 |
| BpuMI | CCSGG | 3 cut(s) | 63, 148, 3048 |
| BsaWI | WCCGGW | 3 cut(s) | 291, 434, 2350 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 356, 368, 386, 398, 881, 911 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 148, 153, 1371, 1901, 2170, 3053 |
| Bse118I | RCCGGY | 2 cut(s) | 27, 305 |
| Bse1I | ACTGG | 7 cut(s) | 526, 729, 819, 861, 1490, 1502, 2484 |
| Bse3DI | GCAATG | 4 cut(s) | 1081, 1219, 1797, 1917 |
| BseAI | TCCGGA | 1 cut(s) | 2350 |
| BseBI | CCWGG | 8 cut(s) | 227, 618, 1014, 1336, 2165, 2316, 2627, 2654 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 148, 153, 1371, 1901, 2170, 3053 |
| BseMI | GCAATG | 4 cut(s) | 1081, 1219, 1797, 1917 |
| BseMII | CTCAG | 2 cut(s) | 773, 2892 |
| BseNI | ACTGG | 7 cut(s) | 526, 729, 819, 861, 1490, 1502, 2484 |
| BseRI | GAGGAG | 6 cut(s) | 134, 352, 355, 358, 1622, 2786 |
| BseXI | GCAGC | 6 cut(s) | 119, 1251, 1406, 1814, 1956, 2050 |
| BseYI | CCCAGC | 1 cut(s) | 1086 |
| BsgI | GTGCAG | 1 cut(s) | 1955 |
| Bsh1236I | CGCG | 5 cut(s) | 39, 58, 144, 353, 693 |
| Bsh1285I | CGRYCG | 1 cut(s) | 25 |
| BshFI | GGCC | 4 cut(s) | 48, 61, 1720, 1747 |
| BshNI | GGYRCC | 2 cut(s) | 612, 1338 |
| BsiEI | CGRYCG | 1 cut(s) | 25 |
| BsiHKAI | GWGCWC | 5 cut(s) | 72, 381, 809, 1063, 2275 |
| BslFI | GGGAC | 2 cut(s) | 1917, 2624 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 148, 153, 1371, 1901, 2170, 3053 |
| BsmAI | GTCTC | 5 cut(s) | 46, 96, 252, 1604, 2743 |
| BsmBI | CGTCTC | 1 cut(s) | 46 |
| BsmFI | GGGAC | 2 cut(s) | 1917, 2624 |
| BsnI | GGCC | 4 cut(s) | 48, 61, 1720, 1747 |
| Bsp1286I | GDGCHC | 6 cut(s) | 72, 381, 729, 809, 1063, 2275 |
| Bsp13I | TCCGGA | 1 cut(s) | 2350 |
| Bsp1407I | TGTACA | 2 cut(s) | 556, 841 |
| Bsp19I | CCATGG | 1 cut(s) | 2593 |
| BspANI | GGCC | 4 cut(s) | 48, 61, 1720, 1747 |
| BspCNI | CTCAG | 2 cut(s) | 774, 2893 |
| BspEI | TCCGGA | 1 cut(s) | 2350 |
| BspFNI | CGCG | 5 cut(s) | 39, 58, 144, 353, 693 |
| BspHI | TCATGA | 1 cut(s) | 1414 |
| BspLI | GGNNCC | 8 cut(s) | 614, 1131, 1340, 1500, 1551, 1905, 2355, 2787 |
| BspMAI | CTGCAG | 2 cut(s) | 430, 2244 |
| BspPI | GGATC | 4 cut(s) | 132, 319, 1823, 2306 |
| BspQI | GCTCTTC | 1 cut(s) | 1932 |
| BspT107I | GGYRCC | 2 cut(s) | 612, 1338 |
| BsrDI | GCAATG | 4 cut(s) | 1081, 1219, 1797, 1917 |
| BsrFI | RCCGGY | 2 cut(s) | 27, 305 |
| BsrGI | TGTACA | 2 cut(s) | 556, 841 |
| BsrI | ACTGG | 7 cut(s) | 526, 729, 819, 861, 1490, 1502, 2484 |
| BssAI | RCCGGY | 2 cut(s) | 27, 305 |
| BssT1I | CCWWGG | 3 cut(s) | 2593, 2789, 2967 |
| Bst2UI | CCWGG | 8 cut(s) | 227, 618, 1014, 1336, 2165, 2316, 2627, 2654 |
| Bst6I | CTCTTC | 4 cut(s) | 329, 477, 1932, 2928 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 684 |
| BstAUI | TGTACA | 2 cut(s) | 556, 841 |
| BstDEI | CTNAG | 7 cut(s) | 782, 995, 1541, 1690, 1965, 2324, 2901 |
| BstDSI | CCRYGG | 3 cut(s) | 661, 2033, 2593 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2168 |
| BstFNI | CGCG | 5 cut(s) | 39, 58, 144, 353, 693 |
| BstH2I | RGCGCY | 1 cut(s) | 1808 |
| BstHHI | GCGC | 5 cut(s) | 39, 146, 211, 693, 1807 |
| BstMAI | GTCTC | 5 cut(s) | 46, 96, 252, 1604, 2743 |
| BstMCI | CGRYCG | 1 cut(s) | 25 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 45, 67, 138, 141, 597, 657, 684, 2038 |
| BstNI | CCWGG | 8 cut(s) | 227, 618, 1014, 1336, 2165, 2316, 2627, 2654 |
| BstNSI | RCATGY | 2 cut(s) | 1705, 2552 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 972 |
| BstSFI | CTRYAG | 4 cut(s) | 426, 1813, 2240, 2697 |
| BstUI | CGCG | 5 cut(s) | 39, 58, 144, 353, 693 |
| BstV1I | GCAGC | 6 cut(s) | 119, 1251, 1406, 1814, 1956, 2050 |
| BstV2I | GAAGAC | 2 cut(s) | 285, 2088 |
| BstX2I | RGATCY | 1 cut(s) | 2327 |
| BstYI | RGATCY | 1 cut(s) | 2327 |
| BsuI | GTATCC | 1 cut(s) | 2633 |
| BsuRI | GGCC | 4 cut(s) | 48, 61, 1720, 1747 |
| BtgI | CCRYGG | 3 cut(s) | 661, 2033, 2593 |
| BtrI | CACGTC | 1 cut(s) | 287 |
| BtsI | GCAGTG | 1 cut(s) | 559 |
| CaiI | CAGNNNCTG | 4 cut(s) | 748, 942, 2306, 2734 |
| CciI | TCATGA | 1 cut(s) | 1414 |
| CfoI | GCGC | 5 cut(s) | 39, 146, 211, 693, 1807 |
| Cfr10I | RCCGGY | 2 cut(s) | 27, 305 |
| Cfr13I | GGNCC | 5 cut(s) | 47, 60, 348, 1129, 1904 |
| CseI | GACGC | 1 cut(s) | 28 |
| Csp6I | GTAC | 7 cut(s) | 557, 613, 842, 878, 898, 2650, 2737 |
| CviAII | CATG | 8 cut(s) | 1182, 1415, 1702, 2072, 2280, 2491, 2549, 2594 |
| CviQI | GTAC | 7 cut(s) | 557, 613, 842, 878, 898, 2650, 2737 |
| DdeI | CTNAG | 7 cut(s) | 782, 995, 1541, 1690, 1965, 2324, 2901 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1536 |
| EaeI | YGGCCR | 2 cut(s) | 1718, 1745 |
| Eam1104I | CTCTTC | 4 cut(s) | 329, 477, 1932, 2928 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1536 |
| EarI | CTCTTC | 4 cut(s) | 329, 477, 1932, 2928 |
| EciI | GGCGGA | 1 cut(s) | 324 |
| Ecl136II | GAGCTC | 3 cut(s) | 70, 807, 1061 |
| Eco130I | CCWWGG | 3 cut(s) | 2593, 2789, 2967 |
| Eco24I | GRGCYC | 4 cut(s) | 72, 729, 809, 1063 |
| Eco47I | GGWCC | 3 cut(s) | 348, 1129, 1904 |
| Eco47III | AGCGCT | 1 cut(s) | 1806 |
| Eco53kI | GAGCTC | 3 cut(s) | 70, 807, 1061 |
| Eco57I | CTGAAG | 3 cut(s) | 1899, 2100, 2952 |
| EcoICRI | GAGCTC | 3 cut(s) | 70, 807, 1061 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2168 |
| EcoRI | GAATTC | 1 cut(s) | 1793 |
| EcoRII | CCWGG | 8 cut(s) | 225, 616, 1012, 1334, 2163, 2314, 2625, 2652 |
| EcoT14I | CCWWGG | 3 cut(s) | 2593, 2789, 2967 |
| EcoT22I | ATGCAT | 1 cut(s) | 1707 |
| EcoT38I | GRGCYC | 4 cut(s) | 72, 729, 809, 1063 |
| ErhI | CCWWGG | 3 cut(s) | 2593, 2789, 2967 |
| Esp3I | CGTCTC | 1 cut(s) | 46 |
| FaeI | CATG | 8 cut(s) | 1185, 1418, 1705, 2075, 2283, 2494, 2552, 2597 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 497, 529 |
| FaqI | GGGAC | 2 cut(s) | 1917, 2624 |
| FatI | CATG | 8 cut(s) | 1181, 1414, 1701, 2071, 2279, 2490, 2548, 2593 |
| FauI | CCCGC | 1 cut(s) | 1687 |
| FbaI | TGATCA | 1 cut(s) | 2493 |
| FblI | GTMKAC | 1 cut(s) | 196 |
| FriOI | GRGCYC | 4 cut(s) | 72, 729, 809, 1063 |
| FspBI | CTAG | 3 cut(s) | 1052, 2228, 2264 |
| GlaI | GCGC | 5 cut(s) | 38, 145, 210, 692, 1806 |
| GsaI | CCCAGC | 1 cut(s) | 1090 |
| GsuI | CTGGAG | 3 cut(s) | 836, 1035, 2675 |
| HaeII | RGCGCY | 1 cut(s) | 1808 |
| HaeIII | GGCC | 4 cut(s) | 48, 61, 1720, 1747 |
| HgaI | GACGC | 1 cut(s) | 28 |
| HhaI | GCGC | 5 cut(s) | 39, 146, 211, 693, 1807 |
| Hin1II | CATG | 8 cut(s) | 1185, 1418, 1705, 2075, 2283, 2494, 2552, 2597 |
| Hin6I | GCGC | 5 cut(s) | 37, 144, 209, 691, 1805 |
| HinP1I | GCGC | 5 cut(s) | 37, 144, 209, 691, 1805 |
| HincII | GTYRAC | 2 cut(s) | 197, 2235 |
| HindII | GTYRAC | 2 cut(s) | 197, 2235 |
| HphI | GGTGA | 8 cut(s) | 95, 424, 515, 1031, 1661, 1964, 2825, 2998 |
| Hpy166II | GTNNAC | 9 cut(s) | 197, 559, 842, 844, 880, 1129, 2235, 2542, 2945 |
| Hpy8I | GTNNAC | 9 cut(s) | 197, 559, 842, 844, 880, 1129, 2235, 2542, 2945 |
| HpyAV | CCTTC | 7 cut(s) | 403, 442, 1019, 1874, 2245, 2496, 2504 |
| HpyCH4IV | ACGT | 4 cut(s) | 286, 1198, 2160, 3059 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 45, 67, 138, 141, 597, 657, 684, 2038 |
| HpyF3I | CTNAG | 7 cut(s) | 782, 995, 1541, 1690, 1965, 2324, 2901 |
| HpySE526I | ACGT | 4 cut(s) | 286, 1198, 2160, 3059 |
| Hsp92II | CATG | 8 cut(s) | 1185, 1418, 1705, 2075, 2283, 2494, 2552, 2597 |
| HspAI | GCGC | 5 cut(s) | 37, 144, 209, 691, 1805 |
| Kpn2I | TCCGGA | 1 cut(s) | 2350 |
| KpnI | GGTACC | 1 cut(s) | 616 |
| KroI | GCCGGC | 1 cut(s) | 305 |
| KroNI | GCCGGC | 1 cut(s) | 307 |
| Ksp22I | TGATCA | 1 cut(s) | 2493 |
| LguI | GCTCTTC | 1 cut(s) | 1932 |
| LmnI | GCTCC | 5 cut(s) | 376, 510, 889, 1812, 2785 |
| Lsp1109I | GCAGC | 6 cut(s) | 119, 1251, 1406, 1814, 1956, 2050 |
| LweI | GCATC | 7 cut(s) | 634, 1429, 1978, 2328, 2509, 2521, 3033 |
| MaeI | CTAG | 3 cut(s) | 1052, 2228, 2264 |
| MaeII | ACGT | 4 cut(s) | 286, 1198, 2160, 3059 |
| MfeI | CAATTG | 2 cut(s) | 907, 955 |
| MflI | RGATCY | 1 cut(s) | 2327 |
| MhlI | GDGCHC | 6 cut(s) | 72, 381, 729, 809, 1063, 2275 |
| MlsI | TGGCCA | 2 cut(s) | 1720, 1747 |
| MluNI | TGGCCA | 2 cut(s) | 1720, 1747 |
| MlyI | GAGTC | 4 cut(s) | 368, 374, 380, 2725 |
| MmeI | TCCRAC | 4 cut(s) | 342, 348, 354, 2562 |
| Mox20I | TGGCCA | 2 cut(s) | 1720, 1747 |
| Mph1103I | ATGCAT | 1 cut(s) | 1707 |
| MreI | CGCCGGCG | 1 cut(s) | 305 |
| MroI | TCCGGA | 1 cut(s) | 2350 |
| MroNI | GCCGGC | 1 cut(s) | 305 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2346 |
| MscI | TGGCCA | 2 cut(s) | 1720, 1747 |
| MslI | CAYNNNNRTG | 3 cut(s) | 2278, 2598, 2811 |
| Msp20I | TGGCCA | 2 cut(s) | 1720, 1747 |
| MspA1I | CMGCKG | 3 cut(s) | 132, 535, 2834 |
| MunI | CAATTG | 2 cut(s) | 907, 955 |
| MvaI | CCWGG | 8 cut(s) | 227, 618, 1014, 1336, 2165, 2316, 2627, 2654 |
| MvnI | CGCG | 5 cut(s) | 39, 58, 144, 353, 693 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 45, 67, 138, 141, 597, 657, 684, 2038 |
| NaeI | GCCGGC | 1 cut(s) | 307 |
| NciI | CCSGG | 3 cut(s) | 63, 148, 3048 |
| NcoI | CCATGG | 1 cut(s) | 2593 |
| NgoMIV | GCCGGC | 1 cut(s) | 305 |
| NlaIII | CATG | 8 cut(s) | 1185, 1418, 1705, 2075, 2283, 2494, 2552, 2597 |
| NlaIV | GGNNCC | 8 cut(s) | 614, 1131, 1340, 1500, 1551, 1905, 2355, 2787 |
| NmeAIII | GCCGAG | 1 cut(s) | 740 |
| NmuCI | GTSAC | 7 cut(s) | 287, 521, 902, 1817, 1960, 2486, 2573 |
| NsiI | ATGCAT | 1 cut(s) | 1707 |
| NspI | RCATGY | 2 cut(s) | 1705, 2552 |
| PaeI | GCATGC | 1 cut(s) | 1705 |
| PagI | TCATGA | 1 cut(s) | 1414 |
| PasI | CCCWGGG | 1 cut(s) | 617 |
| PciSI | GCTCTTC | 1 cut(s) | 1932 |
| PdiI | GCCGGC | 1 cut(s) | 307 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2346 |
| PflFI | GACNNNGTC | 1 cut(s) | 2588 |
| PfoI | TCCNGGA | 1 cut(s) | 2625 |
| PleI | GAGTC | 4 cut(s) | 367, 373, 379, 2725 |
| PpsI | GAGTC | 4 cut(s) | 367, 373, 379, 2725 |
| PshAI | GACNNNNGTC | 1 cut(s) | 972 |
| PshBI | ATTAAT | 1 cut(s) | 1662 |
| Psp124BI | GAGCTC | 3 cut(s) | 72, 809, 1063 |
| Psp6I | CCWGG | 8 cut(s) | 225, 616, 1012, 1334, 2163, 2314, 2625, 2652 |
| PspFI | CCCAGC | 1 cut(s) | 1086 |
| PspGI | CCWGG | 8 cut(s) | 225, 616, 1012, 1334, 2163, 2314, 2625, 2652 |
| PspN4I | GGNNCC | 8 cut(s) | 614, 1131, 1340, 1500, 1551, 1905, 2355, 2787 |
| PspPI | GGNCC | 5 cut(s) | 47, 60, 348, 1129, 1904 |
| PstI | CTGCAG | 2 cut(s) | 430, 2244 |
| PstNI | CAGNNNCTG | 4 cut(s) | 748, 942, 2306, 2734 |
| PsuI | RGATCY | 1 cut(s) | 2327 |
| PsyI | GACNNNGTC | 1 cut(s) | 2588 |
| PvuII | CAGCTG | 1 cut(s) | 2834 |
| RsaI | GTAC | 7 cut(s) | 558, 614, 843, 879, 899, 2651, 2738 |
| RsaNI | GTAC | 7 cut(s) | 557, 613, 842, 878, 898, 2650, 2737 |
| RseI | CAYNNNNRTG | 3 cut(s) | 2278, 2598, 2811 |
| SacI | GAGCTC | 3 cut(s) | 72, 809, 1063 |
| SalI | GTCGAC | 1 cut(s) | 195 |
| SapI | GCTCTTC | 1 cut(s) | 1932 |
| Sau96I | GGNCC | 5 cut(s) | 47, 60, 348, 1129, 1904 |
| SchI | GAGTC | 4 cut(s) | 368, 374, 380, 2725 |
| SduI | GDGCHC | 6 cut(s) | 72, 381, 729, 809, 1063, 2275 |
| SfaNI | GCATC | 7 cut(s) | 634, 1429, 1978, 2328, 2509, 2521, 3033 |
| SfcI | CTRYAG | 4 cut(s) | 426, 1813, 2240, 2697 |
| SgrAI | CRCCGGYG | 2 cut(s) | 27, 305 |
| SinI | GGWCC | 3 cut(s) | 348, 1129, 1904 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 2278, 2598, 2811 |
| SmlI | CTYRAG | 2 cut(s) | 71, 1323 |
| SmoI | CTYRAG | 2 cut(s) | 71, 1323 |
| SphI | GCATGC | 1 cut(s) | 1705 |
| SspI | AATATT | 1 cut(s) | 1666 |
| SspMI | CTAG | 3 cut(s) | 1052, 2228, 2264 |
| SstI | GAGCTC | 3 cut(s) | 72, 809, 1063 |
| StyI | CCWWGG | 3 cut(s) | 2593, 2789, 2967 |
| TaiI | ACGT | 4 cut(s) | 289, 1201, 2163, 3062 |
| TaqI | TCGA | 6 cut(s) | 196, 386, 1467, 2310, 2778, 3025 |
| TatI | WGTACW | 5 cut(s) | 556, 841, 877, 897, 2736 |
| TauI | GCSGC | 8 cut(s) | 16, 19, 61, 132, 144, 165, 173, 176 |
| TseFI | GTSAC | 7 cut(s) | 287, 521, 902, 1817, 1960, 2486, 2573 |
| TseI | GCWGC | 6 cut(s) | 132, 1264, 1394, 1802, 1969, 2038 |
| Tsp45I | GTSAC | 7 cut(s) | 287, 521, 902, 1817, 1960, 2486, 2573 |
| TspGWI | ACGGA | 2 cut(s) | 297, 2930 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2588 |
| VpaK11BI | GGWCC | 3 cut(s) | 348, 1129, 1904 |
| VspI | ATTAAT | 1 cut(s) | 1662 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2168 |
| XapI | RAATTY | 5 cut(s) | 635, 1238, 1793, 2672, 3037 |
| XbaI | TCTAGA | 1 cut(s) | 1051 |
| XceI | RCATGY | 2 cut(s) | 1705, 2552 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1636 |
| XmiI | GTMKAC | 1 cut(s) | 196 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2346 |
| XspI | CTAG | 3 cut(s) | 1052, 2228, 2264 |
| Zsp2I | ATGCAT | 1 cut(s) | 1707 |