AT4G01410

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0017560
Physical Location & Seq
Forward (+)
578028 .. 579287
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01410.1

Sequence Viewer

Length: 684 bp
ATGGGAGAAGGAGAAGCAAAAGCAGAGCACGCAGCCAAAGCAGATCACAAGAACGCTCCCTCCGCTTCTTCAACGCCAGAATCTTACTCTAAAGAAGGCGGAGGAGGCGGTGGAGATGCTCGCCGCGCAATCTGCGGCGCGATCTTCACCATCCTTGTCATACTAGGTATCATAGCCTTAATCCTTTGGCTCGTCTACCGTCCACATAAACCACGTCTCACCGTCGTCGGAGCCGCCATCTACGACCTGAATTTCACAGCGCCGCCGTTAATCTCAACCTCCGTTCAGTTCAGCGTTTTAGCAAGAAACCCTAACCGGAGAGTCTCCATTCACTACGACAAGCTCTCTATGTACGTAACGTACAAAGATCAGATCATAACACCGCCGCTTCCACTACCACCGCTTCGTTTAGGACATAAATCTACGGTTGTGATAGCTCCGGTGATGGGAGGCAACGGTATACCAGTCTCGCCGGAAGTAGCTAATGGTTTAAAAAATGATGAAGCTTACGGCGTCGTTTTGATGAGAGTGGTGATTTTTGGGAGGCTACGTTGGAAAGCTGGTGCGATTAAGACTGGACGGTATGGATTTTACGCCAGATGTGATGTGTGGTTGAGATTTAATCCATCTTCTAACGGACAAGTTCCTCTTCTCGCTCCTTCAACTTGTAAAGTTGATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

227

Amino Acids

24.45

Weight (kDa)

9.74

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 99 - 187 7.1e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017560)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01410
fragaria_vesca FvH4_7g17770
malus_domestica MD07G1160200.v1.1
prunus_persica Prupe.2G198600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0361161
rosa_laevigata RLG00000027744
rosa_multiflora Rmu_co8099248.1_g000001 Rmu_sc0002511.1_g000001
rosa_roxburghii Rroxscaffold_4G00295350
rosa_rugosa Rorug01G0286600
rosa_samantha Rh6CG298900
rosa_wichuraiana Rw1G026330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 195, 460
AccII CGCG 2 cut(s) 126, 140
AcsI RAATTY 1 cut(s) 250
AcyI GRCGYC 1 cut(s) 513
AfaI GTAC 2 cut(s) 353, 362
AfiI CCNNNNNNNGG 1 cut(s) 446
AgsI TTSAA 2 cut(s) 72, 663
AjiI CACGTC 1 cut(s) 215
AloI GAACNNNNNNTCC 2 cut(s) 44, 76
AluBI AGCT 5 cut(s) 343, 437, 482, 506, 560
AluI AGCT 5 cut(s) 343, 437, 482, 506, 560
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 3 cut(s) 221, 328, 472
ApeKI GCWGC 1 cut(s) 32
ApoI RAATTY 1 cut(s) 250
AspLEI GCGC 3 cut(s) 128, 140, 262
AsuHPI GGTGA 4 cut(s) 139, 211, 454, 544
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 44
BccI CCATC 4 cut(s) 158, 245, 439, 634
BceAI ACGGC 2 cut(s) 250, 526
BcoDI GTCTC 3 cut(s) 221, 328, 472
BfaI CTAG 2 cut(s) 164, 682
BfoI RGCGCY 1 cut(s) 263
BisI GCNGC 6 cut(s) 33, 124, 136, 234, 263, 386
BlsI GCNGC 6 cut(s) 34, 125, 137, 235, 264, 387
BmgBI CACGTC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 232
BmsI GCATC 1 cut(s) 106
BsaAI YACGTR 1 cut(s) 355
BsaHI GRCGYC 1 cut(s) 513
BsaWI WCCGGW 2 cut(s) 315, 439
BsaXI ACNNNNNCTCC 4 cut(s) 44, 74, 535, 565
Bsc4I CCNNNNNNNGG 1 cut(s) 446
Bse1I ACTGG 2 cut(s) 464, 580
BseGI GGATG 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 446
BseNI ACTGG 2 cut(s) 464, 580
BseRI GAGGAG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 44
Bsh1236I CGCG 2 cut(s) 126, 140
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 3 cut(s) 316, 440, 473
BslI CCNNNNNNNGG 1 cut(s) 446
BsmAI GTCTC 3 cut(s) 221, 328, 472
BsmBI CGTCTC 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 4 cut(s) 43, 141, 367, 372
BspFNI CGCG 2 cut(s) 126, 140
BspLI GGNNCC 1 cut(s) 232
BsrI ACTGG 2 cut(s) 464, 580
BssMI GATC 4 cut(s) 43, 141, 367, 372
BssNAI GTATAC 1 cut(s) 461
BssNI GRCGYC 1 cut(s) 513
Bst1107I GTATAC 1 cut(s) 461
Bst4CI ACNGT 5 cut(s) 200, 223, 427, 458, 582
Bst6I CTCTTC 1 cut(s) 654
BstACI GRCGYC 1 cut(s) 513
BstBAI YACGTR 1 cut(s) 355
BstC8I GCNNGC 2 cut(s) 30, 121
BstF5I GGATG 1 cut(s) 150
BstFNI CGCG 2 cut(s) 126, 140
BstH2I RGCGCY 1 cut(s) 263
BstHHI GCGC 3 cut(s) 128, 140, 262
BstKTI GATC 4 cut(s) 46, 144, 370, 375
BstMAI GTCTC 3 cut(s) 221, 328, 472
BstMBI GATC 4 cut(s) 43, 141, 367, 372
BstMWI GCNNNNNNNGC 6 cut(s) 29, 38, 62, 105, 125, 132
BstSNI TACGTA 1 cut(s) 355
BstUI CGCG 2 cut(s) 126, 140
BstV1I GCAGC 1 cut(s) 44
BstZ17I GTATAC 1 cut(s) 461
BtrI CACGTC 1 cut(s) 215
BtsCI GGATG 1 cut(s) 150
Cac8I GCNNGC 2 cut(s) 30, 121
CfoI GCGC 3 cut(s) 128, 140, 262
CseI GACGC 1 cut(s) 502
Csp6I GTAC 2 cut(s) 352, 361
CviQI GTAC 2 cut(s) 352, 361
DpnI GATC 4 cut(s) 45, 143, 369, 374
DpnII GATC 4 cut(s) 43, 141, 367, 372
DraI TTTAAA 1 cut(s) 492
Eam1104I CTCTTC 1 cut(s) 654
EarI CTCTTC 1 cut(s) 654
EciI GGCGGA 1 cut(s) 114
Eco105I TACGTA 1 cut(s) 355
Esp3I CGTCTC 1 cut(s) 221
FaiI YATR 8 cut(s) 161, 173, 207, 350, 377, 417, 461, 585
FalI AAGNNNNNCTT 2 cut(s) 633, 665
FblI GTMKAC 2 cut(s) 195, 460
Fnu4HI GCNGC 6 cut(s) 33, 124, 136, 234, 263, 386
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 6 cut(s) 33, 124, 136, 234, 263, 386
FspBI CTAG 2 cut(s) 164, 682
GlaI GCGC 3 cut(s) 127, 139, 261
GluI GCNGC 6 cut(s) 33, 124, 136, 234, 263, 386
HaeII RGCGCY 1 cut(s) 263
HapII CCGG 3 cut(s) 316, 440, 473
HgaI GACGC 1 cut(s) 502
HhaI GCGC 3 cut(s) 128, 140, 262
Hin1I GRCGYC 1 cut(s) 513
Hin6I GCGC 3 cut(s) 126, 138, 260
HinP1I GCGC 3 cut(s) 126, 138, 260
HindIII AAGCTT 1 cut(s) 504
HinfI GANTC 2 cut(s) 80, 321
HpaII CCGG 3 cut(s) 316, 440, 473
HphI GGTGA 4 cut(s) 139, 211, 454, 544
Hpy166II GTNNAC 3 cut(s) 196, 203, 461
Hpy188I TCNGA 2 cut(s) 230, 372
Hpy8I GTNNAC 3 cut(s) 196, 203, 461
Hpy99I CGWCG 3 cut(s) 227, 230, 518
HpyAV CCTTC 2 cut(s) 89, 669
HpyCH4III ACNGT 5 cut(s) 200, 223, 427, 458, 582
HpyCH4IV ACGT 4 cut(s) 214, 354, 359, 550
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 38, 62, 105, 125, 132
HpySE526I ACGT 4 cut(s) 214, 354, 359, 550
Hsp92I GRCGYC 1 cut(s) 513
HspAI GCGC 3 cut(s) 126, 138, 260
Kzo9I GATC 4 cut(s) 43, 141, 367, 372
LmnI GCTCC 4 cut(s) 61, 230, 442, 661
LpnPI CCDG 9 cut(s) 90, 260, 329, 453, 477, 486, 546, 561, 610
Lsp1109I GCAGC 1 cut(s) 44
LweI GCATC 1 cut(s) 106
MaeI CTAG 2 cut(s) 164, 682
MaeII ACGT 4 cut(s) 214, 354, 359, 550
MaeIII GTNAC 1 cut(s) 355
MalI GATC 4 cut(s) 45, 143, 369, 374
MboI GATC 4 cut(s) 43, 141, 367, 372
MboII GAAGA 4 cut(s) 60, 136, 621, 641
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 1 cut(s) 250
MlyI GAGTC 1 cut(s) 330
MmeI TCCRAC 2 cut(s) 208, 533
MnlI CCTC 7 cut(s) 70, 95, 98, 289, 443, 537, 657
MseI TTAA 5 cut(s) 179, 269, 491, 570, 621
MspI CCGG 3 cut(s) 316, 440, 473
MvnI CGCG 2 cut(s) 126, 140
MwoI GCNNNNNNNGC 6 cut(s) 29, 38, 62, 105, 125, 132
NdeII GATC 4 cut(s) 43, 141, 367, 372
NlaIV GGNNCC 1 cut(s) 232
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 6 cut(s) 34, 125, 137, 235, 264, 387
PleI GAGTC 1 cut(s) 329
PpsI GAGTC 1 cut(s) 329
Ppu21I YACGTR 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 232
RsaI GTAC 2 cut(s) 353, 362
RsaNI GTAC 2 cut(s) 352, 361
SaqAI TTAA 5 cut(s) 179, 269, 491, 570, 621
SatI GCNGC 6 cut(s) 33, 124, 136, 234, 263, 386
Sau3AI GATC 4 cut(s) 43, 141, 367, 372
SchI GAGTC 1 cut(s) 330
SduI GDGCHC 1 cut(s) 30
SfaNI GCATC 1 cut(s) 106
SnaBI TACGTA 1 cut(s) 355
Sse9I AATT 1 cut(s) 250
SspMI CTAG 2 cut(s) 164, 682
TaaI ACNGT 5 cut(s) 200, 223, 427, 458, 582
TaiI ACGT 4 cut(s) 217, 357, 362, 553
TasI AATT 1 cut(s) 250
TauI GCSGC 5 cut(s) 126, 138, 236, 265, 388
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 5 cut(s) 179, 269, 491, 570, 621
Tru9I TTAA 5 cut(s) 179, 269, 491, 570, 621
TseI GCWGC 1 cut(s) 32
TspDTI ATGAA 1 cut(s) 516
TspGWI ACGGA 2 cut(s) 271, 651
XapI RAATTY 1 cut(s) 250
XmiI GTMKAC 2 cut(s) 195, 460
XspI CTAG 2 cut(s) 164, 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.