Rmu_co8099248.1_g000001

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8099248.1
OG0017560
Physical Location & Seq
Forward (+)
1 .. 462
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8099248.1_g000001.1.cds

Sequence Viewer

Length: 462 bp
gtcgccatctactccctcaacgccacctcccctccctcccaaatctccaccaccatgcagttcaccatcgtcacgcgcaaccccaaccggagggtctccatccgctacgaccgtctccaggcctttgtggcctatcgcaaccaagccattacccagcaggtgatgctccccccgctggcgcacgggcgccatagtagcgtggctgtgtcgcccgtgcttgggggagtgccggtgccggtgtcggcggaggtgttgaatgggctagcgattgacgaggcgtacggggtggtgaagctgagggtggtggtggtggggaggctgaggtggaaggtgacggggttggggataaggaccgggcattatgggatctatgtcaagtgtgatgtgctggttgggttgaagaaagggttcgtgggtcaagttccattgctgggttctccttattgtaaagttgatatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

153

Amino Acids

16.58

Weight (kDa)

10.2

Isoelectric Point (pI)

38.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017560)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01410
fragaria_vesca FvH4_7g17770
malus_domestica MD07G1160200.v1.1
prunus_persica Prupe.2G198600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0361161
rosa_laevigata RLG00000027744
rosa_multiflora Rmu_co8099248.1_g000001 Rmu_sc0002511.1_g000001
rosa_roxburghii Rroxscaffold_4G00295350
rosa_rugosa Rorug01G0286600
rosa_samantha Rh6CG298900
rosa_wichuraiana Rw1G026330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 148
Acc36I ACCTGC 1 cut(s) 148
AccB1I GGYRCC 2 cut(s) 186, 232
AccII CGCG 1 cut(s) 76
AciI CCGC 3 cut(s) 103, 173, 245
AclWI GGATC 1 cut(s) 374
AcyI GRCGYC 1 cut(s) 187
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 6 cut(s) 90, 118, 175, 218, 219, 431
AgsI TTSAA 2 cut(s) 256, 400
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
Alw26I GTCTC 2 cut(s) 100, 119
AlwI GGATC 1 cut(s) 374
AoxI GGCC 2 cut(s) 120, 129
Asp700I GAANNNNTTC 1 cut(s) 407
AspLEI GCGC 3 cut(s) 78, 181, 189
AspS9I GGNCC 1 cut(s) 351
AsuC2I CCSGG 1 cut(s) 355
AsuHPI GGTGA 4 cut(s) 55, 172, 301, 343
AsuNHI GCTAGC 1 cut(s) 262
AvaII GGWCC 1 cut(s) 351
BanI GGYRCC 2 cut(s) 186, 232
BbvCI CCTCAGC 2 cut(s) 296, 320
BccI CCATC 3 cut(s) 14, 74, 107
BciT130I CCWGG 1 cut(s) 119
BcnI CCSGG 1 cut(s) 355
BcoDI GTCTC 2 cut(s) 100, 119
BfaI CTAG 1 cut(s) 263
BfoI RGCGCY 1 cut(s) 190
BfuAI ACCTGC 1 cut(s) 148
BglI GCCNNNNNGGC 1 cut(s) 128
Bme1390I CCNGG 2 cut(s) 119, 355
Bme18I GGWCC 1 cut(s) 351
BmgT120I GGNCC 1 cut(s) 351
BmiI GGNNCC 2 cut(s) 188, 234
BmrFI CCNGG 2 cut(s) 119, 355
BmsI GCATC 1 cut(s) 153
BmtI GCTAGC 1 cut(s) 266
BpmI CTGGAG 1 cut(s) 101
Bpu10I CCTNAGC 2 cut(s) 296, 320
BpuMI CCSGG 1 cut(s) 355
BsaHI GRCGYC 1 cut(s) 187
BsaI GGTCTC 1 cut(s) 100
BsaWI WCCGGW 1 cut(s) 87
BsaXI ACNNNNNCTCC 6 cut(s) 11, 16, 41, 46, 216, 246
Bsc4I CCNNNNNNNGG 6 cut(s) 90, 118, 175, 218, 219, 431
Bse118I RCCGGY 2 cut(s) 229, 235
Bse3DI GCAATG 1 cut(s) 425
BseBI CCWGG 1 cut(s) 119
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 6 cut(s) 90, 118, 175, 218, 219, 431
BseMI GCAATG 1 cut(s) 425
BseMII CTCAG 2 cut(s) 287, 311
BseYI CCCAGC 2 cut(s) 153, 430
Bsh1236I CGCG 1 cut(s) 76
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 2 cut(s) 122, 131
BshNI GGYRCC 2 cut(s) 186, 232
BsiEI CGRYCG 1 cut(s) 112
BsiSI CCGG 4 cut(s) 88, 230, 236, 354
BsiWI CGTACG 1 cut(s) 279
BslI CCNNNNNNNGG 6 cut(s) 90, 118, 175, 218, 219, 431
BsmAI GTCTC 2 cut(s) 100, 119
BsmBI CGTCTC 1 cut(s) 119
BsnI GGCC 2 cut(s) 122, 131
Bso31I GGTCTC 1 cut(s) 100
Bsp143I GATC 1 cut(s) 366
BspACI CCGC 3 cut(s) 103, 173, 245
BspANI GGCC 2 cut(s) 122, 131
BspCNI CTCAG 2 cut(s) 288, 312
BspFNI CGCG 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 188, 234
BspMI ACCTGC 1 cut(s) 148
BspOI GCTAGC 1 cut(s) 266
BspPI GGATC 1 cut(s) 374
BspT107I GGYRCC 2 cut(s) 186, 232
BspTNI GGTCTC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 425
BsrFI RCCGGY 2 cut(s) 229, 235
BssAI RCCGGY 2 cut(s) 229, 235
BssMI GATC 1 cut(s) 366
BssNI GRCGYC 1 cut(s) 187
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 113
BstACI GRCGYC 1 cut(s) 187
BstAPI GCANNNNNTGC 1 cut(s) 163
BstC8I GCNNGC 2 cut(s) 177, 264
BstDEI CTNAG 2 cut(s) 296, 320
BstF5I GGATG 1 cut(s) 99
BstFNI CGCG 1 cut(s) 76
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 3 cut(s) 78, 181, 189
BstKTI GATC 1 cut(s) 369
BstMAI GTCTC 2 cut(s) 100, 119
BstMBI GATC 1 cut(s) 366
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 4 cut(s) 128, 163, 172, 195
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 2 cut(s) 117, 353
BstUI CGCG 1 cut(s) 76
BstX2I RGATCY 1 cut(s) 366
BstYI RGATCY 1 cut(s) 366
BsuRI GGCC 2 cut(s) 122, 131
BtsCI GGATG 1 cut(s) 99
BveI ACCTGC 1 cut(s) 148
Cac8I GCNNGC 2 cut(s) 177, 264
CfoI GCGC 3 cut(s) 78, 181, 189
Cfr10I RCCGGY 2 cut(s) 229, 235
Cfr13I GGNCC 1 cut(s) 351
Csp6I GTAC 1 cut(s) 280
CviAII CATG 1 cut(s) 55
CviJI RGCY 7 cut(s) 122, 131, 146, 203, 262, 295, 319
CviKI_1 RGCY 7 cut(s) 122, 131, 146, 203, 262, 295, 319
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 2 cut(s) 296, 320
DinI GGCGCC 1 cut(s) 188
DpnI GATC 1 cut(s) 368
DpnII GATC 1 cut(s) 366
EciI GGCGGA 1 cut(s) 260
Eco147I AGGCCT 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 117
EgeI GGCGCC 1 cut(s) 188
EheI GGCGCC 1 cut(s) 188
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 1 cut(s) 58
FaiI YATR 6 cut(s) 56, 192, 363, 372, 458, 460
FatI CATG 1 cut(s) 54
FauI CCCGC 1 cut(s) 180
FokI GGATG 1 cut(s) 86
FspBI CTAG 1 cut(s) 263
GlaI GCGC 3 cut(s) 77, 180, 188
GsaI CCCAGC 2 cut(s) 157, 434
GsuI CTGGAG 1 cut(s) 101
HaeII RGCGCY 1 cut(s) 190
HaeIII GGCC 2 cut(s) 122, 131
HapII CCGG 4 cut(s) 88, 230, 236, 354
HhaI GCGC 3 cut(s) 78, 181, 189
Hin1I GRCGYC 1 cut(s) 187
Hin1II CATG 1 cut(s) 58
Hin6I GCGC 3 cut(s) 76, 179, 187
HinP1I GCGC 3 cut(s) 76, 179, 187
HpaII CCGG 4 cut(s) 88, 230, 236, 354
HphI GGTGA 4 cut(s) 55, 172, 301, 343
Hpy166II GTNNAC 1 cut(s) 63
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4V TGCA 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 4 cut(s) 128, 163, 172, 195
HpyF3I CTNAG 2 cut(s) 296, 320
Hsp92I GRCGYC 1 cut(s) 187
Hsp92II CATG 1 cut(s) 58
HspAI GCGC 3 cut(s) 76, 179, 187
KasI GGCGCC 1 cut(s) 186
Kzo9I GATC 1 cut(s) 366
LmnI GCTCC 1 cut(s) 171
LweI GCATC 1 cut(s) 153
MaeI CTAG 1 cut(s) 263
MaeIII GTNAC 2 cut(s) 70, 331
MalI GATC 1 cut(s) 368
MboI GATC 1 cut(s) 366
MboII GAAGA 1 cut(s) 412
MflI RGATCY 1 cut(s) 366
Mly113I GGCGCC 1 cut(s) 187
MroXI GAANNNNTTC 1 cut(s) 407
MslI CAYNNNNRTG 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 175
MspI CCGG 4 cut(s) 88, 230, 236, 354
MspR9I CCNGG 2 cut(s) 119, 355
MvaI CCWGG 1 cut(s) 119
MvnI CGCG 1 cut(s) 76
MwoI GCNNNNNNNGC 4 cut(s) 128, 163, 172, 195
NarI GGCGCC 1 cut(s) 187
NciI CCSGG 1 cut(s) 355
NdeII GATC 1 cut(s) 366
NheI GCTAGC 1 cut(s) 262
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 2 cut(s) 188, 234
NmuCI GTSAC 2 cut(s) 70, 331
PaqCI CACCTGC 1 cut(s) 148
PceI AGGCCT 1 cut(s) 122
PdmI GAANNNNTTC 1 cut(s) 407
Pfl23II CGTACG 1 cut(s) 279
PluTI GGCGCC 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 117
PspFI CCCAGC 2 cut(s) 153, 430
PspGI CCWGG 1 cut(s) 117
PspLI CGTACG 1 cut(s) 279
PspN4I GGNNCC 2 cut(s) 188, 234
PspPI GGNCC 1 cut(s) 351
PsuI RGATCY 1 cut(s) 366
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 1 cut(s) 53
Sau3AI GATC 1 cut(s) 366
Sau96I GGNCC 1 cut(s) 351
ScrFI CCNGG 2 cut(s) 119, 355
SetI ASST 6 cut(s) 29, 162, 252, 297, 326, 333
SfaNI GCATC 1 cut(s) 153
SfiI GGCCNNNNNGGCC 1 cut(s) 128
SfoI GGCGCC 1 cut(s) 188
SinI GGWCC 1 cut(s) 351
SmiMI CAYNNNNRTG 1 cut(s) 53
SseBI AGGCCT 1 cut(s) 122
SsiI CCGC 3 cut(s) 103, 173, 245
SspDI GGCGCC 1 cut(s) 186
SspMI CTAG 1 cut(s) 263
StuI AGGCCT 1 cut(s) 122
StyD4I CCNGG 2 cut(s) 117, 353
TaaI ACNGT 1 cut(s) 113
TseFI GTSAC 2 cut(s) 70, 331
Tsp45I GTSAC 2 cut(s) 70, 331
VpaK11BI GGWCC 1 cut(s) 351
XmnI GAANNNNTTC 1 cut(s) 407
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.