Rw1G026330

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0017560
Physical Location & Seq
Forward (+)
53461354 .. 53462285
932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G026330.1

Sequence Viewer

Length: 792 bp
ATGGCAGAAGAGCAAAACCACCACCTTCTTCCAGAGTCACCACAAGAGCAAAACCACCACCTTCCTCCAGAGTCACCACAAGAGCAAAACCACCACCCTCTTCCAGAGTCACCACCACCACCACAACAAAAACCACAAAACAACCACTTTCCACCACCCGAAATGATTCCGGACCGAAATATAAAAGAATGTAATATGCATCACCAAACCAGTGAACCCTACAGAGCTCTCTGCACCTGCCTCACCATCCTCATCCTCATCCTCGGCGCCACCGCCCTCGCGCTCTGGCTCGTTTACCGCCCCCACAAGCCGCAGTTCACCGTCGCCGCGGTCGCCATCTACTCCCTCAACGCCACCTCCCCTCCCTCCCAAATCTCCACCACCATGCAGTTCACCATCGTCACGCGCAACCCCAACCGGAGGGTCTCCATCCGCTACGACCATCTCCAGGCCTTTGTGGCCTATCGCAACCAAGCCATTACCCAGCAGGTGATGCTCCCCCCGCTGGCGCACGGGCGCCATAGTAGCGTGGCTGTGTCGCCCGTGCTTGGGGGAGTGGCGGTGCCGGTGTCGGCGGAGGTGTTGAACGGGCTAGCGATTGACGAGGCGTACGGGGTGGTGAAGCTGAGGGTGGTGGTGGTAGGGAGGCTGAGGTGGAAGGTGACGGGGTTGGGGATAAGGACCGGGCATTATGGGATCTATGTCAAGTGTGATGTGCTGGTTGGGTTGAAGAAAGGGTTCGTGGGTCAAGTTCCATTGCTGGGTTCTCCTTATTGTAAAGTTGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

263

Amino Acids

29.13

Weight (kDa)

8.98

Isoelectric Point (pI)

62.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 136 - 237 4e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017560)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01410
fragaria_vesca FvH4_7g17770
malus_domestica MD07G1160200.v1.1
prunus_persica Prupe.2G198600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0361161
rosa_laevigata RLG00000027744
rosa_multiflora Rmu_co8099248.1_g000001 Rmu_sc0002511.1_g000001
rosa_roxburghii Rroxscaffold_4G00295350
rosa_rugosa Rorug01G0286600
rosa_samantha Rh6CG298900
rosa_wichuraiana Rw1G026330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 245, 478
Acc36I ACCTGC 2 cut(s) 245, 478
AccB1I GGYRCC 3 cut(s) 266, 516, 562
AccII CGCG 3 cut(s) 281, 329, 406
AccIII TCCGGA 1 cut(s) 169
AciI CCGC 9 cut(s) 273, 298, 311, 327, 329, 433, 503, 560, 575
AclWI GGATC 1 cut(s) 704
AcyI GRCGYC 2 cut(s) 267, 517
AfaI GTAC 1 cut(s) 611
AfiI CCNNNNNNNGG 6 cut(s) 420, 448, 505, 548, 549, 761
AgsI TTSAA 2 cut(s) 586, 730
AjnI CCWGG 1 cut(s) 447
AluBI AGCT 2 cut(s) 227, 625
AluI AGCT 2 cut(s) 227, 625
Alw21I GWGCWC 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 430
AlwI GGATC 1 cut(s) 704
Aor13HI TCCGGA 1 cut(s) 169
AoxI GGCC 2 cut(s) 450, 459
Asp700I GAANNNNTTC 2 cut(s) 165, 737
AspLEI GCGC 5 cut(s) 269, 283, 408, 511, 519
AspS9I GGNCC 2 cut(s) 172, 681
AsuC2I CCSGG 1 cut(s) 685
AsuNHI GCTAGC 1 cut(s) 592
AvaII GGWCC 2 cut(s) 172, 681
BanI GGYRCC 3 cut(s) 266, 516, 562
BanII GRGCYC 1 cut(s) 229
Bbv12I GWGCWC 1 cut(s) 229
BbvCI CCTCAGC 2 cut(s) 626, 650
BccI CCATC 5 cut(s) 254, 344, 404, 437, 450
BciT130I CCWGG 1 cut(s) 449
BcnI CCSGG 1 cut(s) 685
BcoDI GTCTC 1 cut(s) 430
BfaI CTAG 1 cut(s) 593
BfmI CTRYAG 1 cut(s) 220
BfoI RGCGCY 2 cut(s) 270, 520
BfuAI ACCTGC 2 cut(s) 245, 478
BglI GCCNNNNNGGC 1 cut(s) 458
BisI GCNGC 2 cut(s) 311, 327
BlsI GCNGC 2 cut(s) 312, 328
Bme1390I CCNGG 2 cut(s) 449, 685
Bme18I GGWCC 2 cut(s) 172, 681
BmgT120I GGNCC 2 cut(s) 172, 681
BmiI GGNNCC 3 cut(s) 268, 518, 564
BmrFI CCNGG 2 cut(s) 449, 685
BmsI GCATC 2 cut(s) 208, 483
BmtI GCTAGC 1 cut(s) 596
BpmI CTGGAG 2 cut(s) 51, 431
Bpu10I CCTNAGC 2 cut(s) 626, 650
BpuMI CCSGG 1 cut(s) 685
BsaHI GRCGYC 2 cut(s) 267, 517
BsaI GGTCTC 1 cut(s) 430
BsaJI CCNNGG 2 cut(s) 262, 327
BsaWI WCCGGW 2 cut(s) 169, 417
BsaXI ACNNNNNCTCC 6 cut(s) 341, 346, 371, 376, 546, 576
Bsc4I CCNNNNNNNGG 6 cut(s) 420, 448, 505, 548, 549, 761
Bse118I RCCGGY 1 cut(s) 565
Bse1I ACTGG 1 cut(s) 210
Bse3DI GCAATG 1 cut(s) 755
BseAI TCCGGA 1 cut(s) 169
BseBI CCWGG 1 cut(s) 449
BseDI CCNNGG 2 cut(s) 262, 327
BseGI GGATG 4 cut(s) 246, 252, 258, 429
BseLI CCNNNNNNNGG 6 cut(s) 420, 448, 505, 548, 549, 761
BseMI GCAATG 1 cut(s) 755
BseMII CTCAG 2 cut(s) 617, 641
BseNI ACTGG 1 cut(s) 210
BseYI CCCAGC 2 cut(s) 483, 760
BsgI GTGCAG 1 cut(s) 217
Bsh1236I CGCG 3 cut(s) 281, 329, 406
Bsh1285I CGRYCG 1 cut(s) 333
BshFI GGCC 2 cut(s) 452, 461
BshNI GGYRCC 3 cut(s) 266, 516, 562
BsiEI CGRYCG 1 cut(s) 333
BsiHKAI GWGCWC 1 cut(s) 229
BsiSI CCGG 4 cut(s) 170, 418, 566, 684
BsiWI CGTACG 1 cut(s) 609
BslI CCNNNNNNNGG 6 cut(s) 420, 448, 505, 548, 549, 761
BsmAI GTCTC 1 cut(s) 430
BsnI GGCC 2 cut(s) 452, 461
Bso31I GGTCTC 1 cut(s) 430
Bsp1286I GDGCHC 1 cut(s) 229
Bsp13I TCCGGA 1 cut(s) 169
Bsp143I GATC 1 cut(s) 696
BspACI CCGC 9 cut(s) 273, 298, 311, 327, 329, 433, 503, 560, 575
BspANI GGCC 2 cut(s) 452, 461
BspCNI CTCAG 2 cut(s) 618, 642
BspEI TCCGGA 1 cut(s) 169
BspFNI CGCG 3 cut(s) 281, 329, 406
BspLI GGNNCC 3 cut(s) 268, 518, 564
BspMI ACCTGC 2 cut(s) 245, 478
BspOI GCTAGC 1 cut(s) 596
BspPI GGATC 1 cut(s) 704
BspQI GCTCTTC 1 cut(s) 3
BspT107I GGYRCC 3 cut(s) 266, 516, 562
BspTNI GGTCTC 1 cut(s) 430
BsrDI GCAATG 1 cut(s) 755
BsrFI RCCGGY 1 cut(s) 565
BsrI ACTGG 1 cut(s) 210
BssAI RCCGGY 1 cut(s) 565
BssECI CCNNGG 2 cut(s) 262, 327
BssMI GATC 1 cut(s) 696
BssNI GRCGYC 2 cut(s) 267, 517
Bst2UI CCWGG 1 cut(s) 449
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 2 cut(s) 3, 105
BstACI GRCGYC 2 cut(s) 267, 517
BstAPI GCANNNNNTGC 1 cut(s) 493
BstC8I GCNNGC 2 cut(s) 507, 594
BstDEI CTNAG 2 cut(s) 626, 650
BstDSI CCRYGG 1 cut(s) 327
BstF5I GGATG 4 cut(s) 246, 252, 258, 429
BstFNI CGCG 3 cut(s) 281, 329, 406
BstH2I RGCGCY 2 cut(s) 270, 520
BstHHI GCGC 5 cut(s) 269, 283, 408, 511, 519
BstKTI GATC 1 cut(s) 699
BstMAI GTCTC 1 cut(s) 430
BstMBI GATC 1 cut(s) 696
BstMCI CGRYCG 1 cut(s) 333
BstMWI GCNNNNNNNGC 5 cut(s) 332, 458, 493, 502, 525
BstNI CCWGG 1 cut(s) 449
BstSCI CCNGG 2 cut(s) 447, 683
BstSFI CTRYAG 1 cut(s) 220
BstUI CGCG 3 cut(s) 281, 329, 406
BstX2I RGATCY 1 cut(s) 696
BstYI RGATCY 1 cut(s) 696
BsuRI GGCC 2 cut(s) 452, 461
BtgI CCRYGG 1 cut(s) 327
BtsCI GGATG 4 cut(s) 246, 252, 258, 429
BtsIMutI CAGTG 1 cut(s) 217
BveI ACCTGC 2 cut(s) 245, 478
Cac8I GCNNGC 2 cut(s) 507, 594
CfoI GCGC 5 cut(s) 269, 283, 408, 511, 519
Cfr10I RCCGGY 1 cut(s) 565
Cfr13I GGNCC 2 cut(s) 172, 681
Cfr42I CCGCGG 1 cut(s) 330
CpoI CGGWCCG 1 cut(s) 172
Csp6I GTAC 1 cut(s) 610
CspI CGGWCCG 1 cut(s) 172
CviAII CATG 1 cut(s) 385
CviQI GTAC 1 cut(s) 610
DdeI CTNAG 2 cut(s) 626, 650
DinI GGCGCC 2 cut(s) 268, 518
DpnI GATC 1 cut(s) 698
DpnII GATC 1 cut(s) 696
Eam1104I CTCTTC 2 cut(s) 3, 105
EarI CTCTTC 2 cut(s) 3, 105
EciI GGCGGA 1 cut(s) 590
Ecl136II GAGCTC 1 cut(s) 227
Eco147I AGGCCT 1 cut(s) 452
Eco24I GRGCYC 1 cut(s) 229
Eco31I GGTCTC 1 cut(s) 430
Eco47I GGWCC 2 cut(s) 172, 681
Eco53kI GAGCTC 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 447
EcoT22I ATGCAT 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 229
EgeI GGCGCC 2 cut(s) 268, 518
EheI GGCGCC 2 cut(s) 268, 518
FaeI CATG 1 cut(s) 388
FaiI YATR 8 cut(s) 182, 197, 386, 522, 693, 702, 788, 790
FatI CATG 1 cut(s) 384
FauI CCCGC 1 cut(s) 510
Fnu4HI GCNGC 2 cut(s) 311, 327
FokI GGATG 4 cut(s) 233, 239, 245, 416
FriOI GRGCYC 1 cut(s) 229
Fsp4HI GCNGC 2 cut(s) 311, 327
FspBI CTAG 1 cut(s) 593
GlaI GCGC 5 cut(s) 268, 282, 407, 510, 518
GluI GCNGC 2 cut(s) 311, 327
GsaI CCCAGC 2 cut(s) 487, 764
GsuI CTGGAG 2 cut(s) 51, 431
HaeII RGCGCY 2 cut(s) 270, 520
HaeIII GGCC 2 cut(s) 452, 461
HapII CCGG 4 cut(s) 170, 418, 566, 684
HhaI GCGC 5 cut(s) 269, 283, 408, 511, 519
Hin1I GRCGYC 2 cut(s) 267, 517
Hin1II CATG 1 cut(s) 388
Hin6I GCGC 5 cut(s) 267, 281, 406, 509, 517
HinP1I GCGC 5 cut(s) 267, 281, 406, 509, 517
HinfI GANTC 4 cut(s) 35, 71, 107, 166
HpaII CCGG 4 cut(s) 170, 418, 566, 684
Hpy166II GTNNAC 4 cut(s) 215, 295, 318, 393
Hpy188III TCNNGA 4 cut(s) 32, 68, 104, 170
Hpy8I GTNNAC 4 cut(s) 215, 295, 318, 393
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 3 cut(s) 35, 71, 652
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4V TGCA 3 cut(s) 199, 234, 388
HpyF10VI GCNNNNNNNGC 5 cut(s) 332, 458, 493, 502, 525
HpyF3I CTNAG 2 cut(s) 626, 650
Hsp92I GRCGYC 2 cut(s) 267, 517
Hsp92II CATG 1 cut(s) 388
HspAI GCGC 5 cut(s) 267, 281, 406, 509, 517
KasI GGCGCC 2 cut(s) 266, 516
Kpn2I TCCGGA 1 cut(s) 169
KspI CCGCGG 1 cut(s) 330
Kzo9I GATC 1 cut(s) 696
LguI GCTCTTC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 501
LweI GCATC 2 cut(s) 208, 483
MaeI CTAG 1 cut(s) 593
MaeIII GTNAC 5 cut(s) 36, 72, 108, 400, 661
MalI GATC 1 cut(s) 698
MboI GATC 1 cut(s) 696
MboII GAAGA 4 cut(s) 20, 20, 92, 742
MflI RGATCY 1 cut(s) 696
MhlI GDGCHC 1 cut(s) 229
Mly113I GGCGCC 2 cut(s) 267, 517
MlyI GAGTC 3 cut(s) 44, 80, 116
Mph1103I ATGCAT 1 cut(s) 201
MroI TCCGGA 1 cut(s) 169
MroXI GAANNNNTTC 2 cut(s) 165, 737
MslI CAYNNNNRTG 1 cut(s) 383
MspA1I CMGCKG 2 cut(s) 329, 505
MspI CCGG 4 cut(s) 170, 418, 566, 684
MspR9I CCNGG 2 cut(s) 449, 685
MvaI CCWGG 1 cut(s) 449
MvnI CGCG 3 cut(s) 281, 329, 406
MwoI GCNNNNNNNGC 5 cut(s) 332, 458, 493, 502, 525
NarI GGCGCC 2 cut(s) 267, 517
NciI CCSGG 1 cut(s) 685
NdeII GATC 1 cut(s) 696
NheI GCTAGC 1 cut(s) 592
NlaIII CATG 1 cut(s) 388
NlaIV GGNNCC 3 cut(s) 268, 518, 564
NmeAIII GCCGAG 1 cut(s) 243
NmuCI GTSAC 5 cut(s) 36, 72, 108, 400, 661
NsiI ATGCAT 1 cut(s) 201
PaqCI CACCTGC 2 cut(s) 245, 478
PceI AGGCCT 1 cut(s) 452
PciSI GCTCTTC 1 cut(s) 3
PdmI GAANNNNTTC 2 cut(s) 165, 737
PfeI GAWTC 1 cut(s) 166
Pfl23II CGTACG 1 cut(s) 609
PkrI GCNGC 2 cut(s) 312, 328
PleI GAGTC 3 cut(s) 43, 79, 115
PluTI GGCGCC 2 cut(s) 270, 520
PpsI GAGTC 3 cut(s) 43, 79, 115
Psp124BI GAGCTC 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 447
PspFI CCCAGC 2 cut(s) 483, 760
PspGI CCWGG 1 cut(s) 447
PspLI CGTACG 1 cut(s) 609
PspN4I GGNNCC 3 cut(s) 268, 518, 564
PspPI GGNCC 2 cut(s) 172, 681
PsuI RGATCY 1 cut(s) 696
RsaI GTAC 1 cut(s) 611
RsaNI GTAC 1 cut(s) 610
RseI CAYNNNNRTG 1 cut(s) 383
Rsr2I CGGWCCG 1 cut(s) 172
RsrII CGGWCCG 1 cut(s) 172
SacI GAGCTC 1 cut(s) 229
SacII CCGCGG 1 cut(s) 330
SapI GCTCTTC 1 cut(s) 3
SatI GCNGC 2 cut(s) 311, 327
Sau3AI GATC 1 cut(s) 696
Sau96I GGNCC 2 cut(s) 172, 681
SchI GAGTC 3 cut(s) 44, 80, 116
ScrFI CCNGG 2 cut(s) 449, 685
SduI GDGCHC 1 cut(s) 229
SfaNI GCATC 2 cut(s) 208, 483
SfcI CTRYAG 1 cut(s) 220
SfiI GGCCNNNNNGGCC 1 cut(s) 458
SfoI GGCGCC 2 cut(s) 268, 518
Sfr303I CCGCGG 1 cut(s) 330
SgrBI CCGCGG 1 cut(s) 330
SinI GGWCC 2 cut(s) 172, 681
SmiMI CAYNNNNRTG 1 cut(s) 383
SseBI AGGCCT 1 cut(s) 452
SsiI CCGC 9 cut(s) 273, 298, 311, 327, 329, 433, 503, 560, 575
SspDI GGCGCC 2 cut(s) 266, 516
SspMI CTAG 1 cut(s) 593
SstI GAGCTC 1 cut(s) 229
StuI AGGCCT 1 cut(s) 452
StyD4I CCNGG 2 cut(s) 447, 683
TaaI ACNGT 1 cut(s) 322
TaqII GACCGA 1 cut(s) 189
TauI GCSGC 2 cut(s) 313, 329
TfiI GAWTC 1 cut(s) 166
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 5 cut(s) 36, 72, 108, 400, 661
Tsp45I GTSAC 5 cut(s) 36, 72, 108, 400, 661
TspRI CASTG 1 cut(s) 217
VpaK11BI GGWCC 2 cut(s) 172, 681
XmnI GAANNNNTTC 2 cut(s) 165, 737
XspI CTAG 1 cut(s) 593
Zsp2I ATGCAT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.