Prupe.2G198600_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0017560
Physical Location & Seq
Forward (+)
23602048 .. 23603031
984 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G198600.1

Sequence Viewer

Length: 696 bp
ATGACAAAGGAGCACCCTCCAGATAAAACCCATCACCACCTCCCTAAAATGACCGAAGAAGAAGATCATAAAAAAAACCCCACCACAAAAAAACGATACATGGCTTCCTCACCAATTTACACCAGCGGCCCCTACAGATCCATCTGCACCTGCCTCTCCATCTTCCTCCTCCTCGCCGGCGTCACCGCCCTCACGCTCTGGCTCGTCTACCGCCCCCACAAACCCCAGTTCACCGTCGTCGGCGCCGCCGTCTACGACCTCAACGCCACTTCCCCTCCCCTCATCTCCACCACCATGCAGTTCACCCTCGTCACCCACAACCCCAACCGCCGCGTGTCCATCTACTACGACCGCCTCTACGCCTTCGTGTCGTACAAGAACCAGGCGATCACACCACAGGTGGCCCTGCCGTCGCTGGTGCACGAGCATCGGAGCACGGTGGCGGTGTCGCCGGTGCTGGGCGGCAGGGCGGTGCCGGTGTCGTTGGAGGTGGTGAACGGGCTAACGATGGACGAGGCGTACGGCGTGGTGGGGCTGAGGGTGGTGGTGATGGGGAGGCTGCGGTGGAAGGCCGGTGCGATAAGGACTGCGCATTATGGGGTTTATGTCAAGTGTGATGTTTTGGTTGGGTTGAAGAGAGGGTTTGTGGGTCAAGTTCCTTTGCTTGGAAATCCTTCATGTCAAGTTGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

232

Amino Acids

25.6

Weight (kDa)

9.59

Isoelectric Point (pI)

49.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017560)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01410
fragaria_vesca FvH4_7g17770
malus_domestica MD07G1160200.v1.1
prunus_persica Prupe.2G198600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0361161
rosa_laevigata RLG00000027744
rosa_multiflora Rmu_co8099248.1_g000001 Rmu_sc0002511.1_g000001
rosa_roxburghii Rroxscaffold_4G00295350
rosa_rugosa Rorug01G0286600
rosa_samantha Rh6CG298900
rosa_wichuraiana Rw1G026330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 158
Acc16I TGCGCA 1 cut(s) 591
Acc36I ACCTGC 1 cut(s) 158
AccB1I GGYRCC 2 cut(s) 242, 472
AccI GTMKAC 2 cut(s) 207, 252
AccII CGCG 1 cut(s) 333
AclWI GGATC 1 cut(s) 132
AcyI GRCGYC 2 cut(s) 180, 243
AfaI GTAC 2 cut(s) 374, 521
AfiI CCNNNNNNNGG 2 cut(s) 458, 665
AgsI TTSAA 1 cut(s) 634
AjnI CCWGG 1 cut(s) 381
Alw21I GWGCWC 3 cut(s) 15, 423, 437
Alw44I GTGCAC 1 cut(s) 419
AlwI GGATC 1 cut(s) 132
AoxI GGCC 3 cut(s) 127, 402, 570
ApaLI GTGCAC 1 cut(s) 419
ApeKI GCWGC 1 cut(s) 559
Asp700I GAANNNNTTC 1 cut(s) 673
AspLEI GCGC 2 cut(s) 245, 592
AspS9I GGNCC 2 cut(s) 128, 403
AsuHPI GGTGA 8 cut(s) 26, 102, 175, 223, 295, 304, 505, 559
BaeGI GKGCMC 1 cut(s) 423
BanI GGYRCC 2 cut(s) 242, 472
BauI CACGAG 1 cut(s) 422
Bbv12I GWGCWC 3 cut(s) 15, 423, 437
BbvCI CCTCAGC 1 cut(s) 536
BbvI GCAGC 1 cut(s) 546
BccI CCATC 6 cut(s) 39, 149, 167, 347, 502, 544
BceAI ACGGC 3 cut(s) 233, 394, 538
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BciT130I CCWGG 1 cut(s) 383
BfmI CTRYAG 1 cut(s) 133
BfoI RGCGCY 1 cut(s) 246
BfuAI ACCTGC 1 cut(s) 158
BisI GCNGC 5 cut(s) 127, 246, 331, 463, 560
BlsI GCNGC 5 cut(s) 128, 247, 332, 464, 561
Bme1390I CCNGG 1 cut(s) 383
BmgT120I GGNCC 2 cut(s) 128, 403
BmiI GGNNCC 3 cut(s) 130, 244, 474
BmrFI CCNGG 1 cut(s) 383
BmrI ACTGGG 1 cut(s) 220
BmsI GCATC 1 cut(s) 436
BmuI ACTGGG 1 cut(s) 220
Bpu10I CCTNAGC 1 cut(s) 536
BsaHI GRCGYC 2 cut(s) 180, 243
BsaXI ACNNNNNCTCC 2 cut(s) 259, 289
Bsc4I CCNNNNNNNGG 2 cut(s) 458, 665
Bse118I RCCGGY 4 cut(s) 176, 451, 475, 572
Bse1I ACTGG 1 cut(s) 226
BseBI CCWGG 1 cut(s) 383
BseLI CCNNNNNNNGG 2 cut(s) 458, 665
BseMII CTCAG 1 cut(s) 527
BseNI ACTGG 1 cut(s) 226
BseRI GAGGAG 2 cut(s) 158, 161
BseSI GKGCMC 1 cut(s) 423
BseXI GCAGC 1 cut(s) 546
BseYI CCCAGC 1 cut(s) 457
BsgI GTGCAG 1 cut(s) 130
Bsh1236I CGCG 1 cut(s) 333
Bsh1285I CGRYCG 1 cut(s) 352
BshFI GGCC 3 cut(s) 129, 404, 572
BshNI GGYRCC 2 cut(s) 242, 472
BsiEI CGRYCG 1 cut(s) 352
BsiHKAI GWGCWC 3 cut(s) 15, 423, 437
BsiSI CCGG 4 cut(s) 177, 452, 476, 573
BsiWI CGTACG 1 cut(s) 519
BslI CCNNNNNNNGG 2 cut(s) 458, 665
BsnI GGCC 3 cut(s) 129, 404, 572
Bsp1286I GDGCHC 3 cut(s) 15, 423, 437
Bsp143I GATC 3 cut(s) 64, 137, 387
BspANI GGCC 3 cut(s) 129, 404, 572
BspCNI CTCAG 1 cut(s) 528
BspFNI CGCG 1 cut(s) 333
BspLI GGNNCC 3 cut(s) 130, 244, 474
BspMI ACCTGC 1 cut(s) 158
BspPI GGATC 1 cut(s) 132
BspT107I GGYRCC 2 cut(s) 242, 472
BsrFI RCCGGY 4 cut(s) 176, 451, 475, 572
BsrI ACTGG 1 cut(s) 226
BssAI RCCGGY 4 cut(s) 176, 451, 475, 572
BssMI GATC 3 cut(s) 64, 137, 387
BssNI GRCGYC 2 cut(s) 180, 243
BssSI CACGAG 1 cut(s) 422
Bst2BI CACGAG 1 cut(s) 422
Bst2UI CCWGG 1 cut(s) 383
Bst4CI ACNGT 2 cut(s) 235, 439
Bst6I CTCTTC 1 cut(s) 629
BstACI GRCGYC 2 cut(s) 180, 243
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 536
BstFNI CGCG 1 cut(s) 333
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 2 cut(s) 245, 592
BstKTI GATC 3 cut(s) 67, 140, 390
BstMBI GATC 3 cut(s) 64, 137, 387
BstMCI CGRYCG 1 cut(s) 352
BstNI CCWGG 1 cut(s) 383
BstSCI CCNGG 1 cut(s) 381
BstSFI CTRYAG 1 cut(s) 133
BstSLI GKGCMC 1 cut(s) 423
BstUI CGCG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 546
BstX2I RGATCY 1 cut(s) 137
BstYI RGATCY 1 cut(s) 137
BsuRI GGCC 3 cut(s) 129, 404, 572
BveI ACCTGC 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 178
CfoI GCGC 2 cut(s) 245, 592
Cfr10I RCCGGY 4 cut(s) 176, 451, 475, 572
Cfr13I GGNCC 2 cut(s) 128, 403
CseI GACGC 1 cut(s) 169
Csp6I GTAC 2 cut(s) 373, 520
CviAII CATG 3 cut(s) 100, 295, 678
CviJI RGCY 8 cut(s) 104, 129, 202, 404, 502, 535, 559, 572
CviKI_1 RGCY 8 cut(s) 104, 129, 202, 404, 502, 535, 559, 572
CviQI GTAC 2 cut(s) 373, 520
DdeI CTNAG 1 cut(s) 536
DinI GGCGCC 1 cut(s) 244
DpnI GATC 3 cut(s) 66, 139, 389
DpnII GATC 3 cut(s) 64, 137, 387
Eam1104I CTCTTC 1 cut(s) 629
EarI CTCTTC 1 cut(s) 629
EcoRII CCWGG 1 cut(s) 381
EgeI GGCGCC 1 cut(s) 244
EheI GGCGCC 1 cut(s) 244
FaeI CATG 3 cut(s) 103, 298, 681
FaiI YATR 8 cut(s) 69, 101, 296, 597, 606, 679, 692, 694
FatI CATG 3 cut(s) 99, 294, 677
FblI GTMKAC 2 cut(s) 207, 252
Fnu4HI GCNGC 5 cut(s) 127, 246, 331, 463, 560
Fsp4HI GCNGC 5 cut(s) 127, 246, 331, 463, 560
FspI TGCGCA 1 cut(s) 591
GlaI GCGC 2 cut(s) 244, 591
GluI GCNGC 5 cut(s) 127, 246, 331, 463, 560
GsaI CCCAGC 1 cut(s) 461
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 3 cut(s) 129, 404, 572
HapII CCGG 4 cut(s) 177, 452, 476, 573
HgaI GACGC 1 cut(s) 169
HhaI GCGC 2 cut(s) 245, 592
Hin1I GRCGYC 2 cut(s) 180, 243
Hin1II CATG 3 cut(s) 103, 298, 681
Hin6I GCGC 2 cut(s) 243, 590
HinP1I GCGC 2 cut(s) 243, 590
HpaII CCGG 4 cut(s) 177, 452, 476, 573
HphI GGTGA 8 cut(s) 26, 102, 175, 223, 295, 304, 505, 559
Hpy166II GTNNAC 6 cut(s) 208, 231, 253, 303, 421, 496
Hpy188I TCNGA 1 cut(s) 432
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 6 cut(s) 208, 231, 253, 303, 421, 496
Hpy99I CGWCG 3 cut(s) 239, 242, 415
HpyAV CCTTC 3 cut(s) 373, 562, 684
HpyCH4III ACNGT 2 cut(s) 235, 439
HpyCH4V TGCA 3 cut(s) 147, 298, 421
HpyF3I CTNAG 1 cut(s) 536
Hsp92I GRCGYC 2 cut(s) 180, 243
Hsp92II CATG 3 cut(s) 103, 298, 681
HspAI GCGC 2 cut(s) 243, 590
KasI GGCGCC 1 cut(s) 242
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
Kzo9I GATC 3 cut(s) 64, 137, 387
LmnI GCTCC 2 cut(s) 10, 432
Lsp1109I GCAGC 1 cut(s) 546
LweI GCATC 1 cut(s) 436
MaeIII GTNAC 2 cut(s) 181, 310
MalI GATC 3 cut(s) 66, 139, 389
MboI GATC 3 cut(s) 64, 137, 387
MboII GAAGA 5 cut(s) 68, 71, 74, 154, 646
MflI RGATCY 1 cut(s) 137
MhlI GDGCHC 3 cut(s) 15, 423, 437
MluCI AATT 1 cut(s) 114
Mly113I GGCGCC 1 cut(s) 243
MmeI TCCRAC 1 cut(s) 465
MreI CGCCGGCG 1 cut(s) 176
MroNI GCCGGC 1 cut(s) 176
MroXI GAANNNNTTC 1 cut(s) 673
MslI CAYNNNNRTG 1 cut(s) 293
MspA1I CMGCKG 1 cut(s) 126
MspI CCGG 4 cut(s) 177, 452, 476, 573
MspR9I CCNGG 1 cut(s) 383
MvaI CCWGG 1 cut(s) 383
MvnI CGCG 1 cut(s) 333
NaeI GCCGGC 1 cut(s) 178
NarI GGCGCC 1 cut(s) 243
NdeII GATC 3 cut(s) 64, 137, 387
NgoMIV GCCGGC 1 cut(s) 176
NlaIII CATG 3 cut(s) 103, 298, 681
NlaIV GGNNCC 3 cut(s) 130, 244, 474
NmuCI GTSAC 2 cut(s) 181, 310
NsbI TGCGCA 1 cut(s) 591
PaqCI CACCTGC 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PdiI GCCGGC 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 673
Pfl23II CGTACG 1 cut(s) 519
PkrI GCNGC 5 cut(s) 128, 247, 332, 464, 561
PluTI GGCGCC 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 381
PspFI CCCAGC 1 cut(s) 457
PspGI CCWGG 1 cut(s) 381
PspLI CGTACG 1 cut(s) 519
PspN4I GGNNCC 3 cut(s) 130, 244, 474
PspPI GGNCC 2 cut(s) 128, 403
PsuI RGATCY 1 cut(s) 137
RsaI GTAC 2 cut(s) 374, 521
RsaNI GTAC 2 cut(s) 373, 520
RseI CAYNNNNRTG 1 cut(s) 293
SatI GCNGC 5 cut(s) 127, 246, 331, 463, 560
Sau3AI GATC 3 cut(s) 64, 137, 387
Sau96I GGNCC 2 cut(s) 128, 403
ScrFI CCNGG 1 cut(s) 383
SduI GDGCHC 3 cut(s) 15, 423, 437
SetI ASST 5 cut(s) 42, 152, 261, 402, 492
SfaNI GCATC 1 cut(s) 436
SfcI CTRYAG 1 cut(s) 133
SfoI GGCGCC 1 cut(s) 244
SgrAI CRCCGGYG 2 cut(s) 176, 451
SmiMI CAYNNNNRTG 1 cut(s) 293
Sse9I AATT 1 cut(s) 114
SspDI GGCGCC 1 cut(s) 242
StyD4I CCNGG 1 cut(s) 381
TaaI ACNGT 2 cut(s) 235, 439
TaqII GACCGA 1 cut(s) 68
TasI AATT 1 cut(s) 114
TauI GCSGC 4 cut(s) 129, 248, 333, 465
TseFI GTSAC 2 cut(s) 181, 310
TseI GCWGC 1 cut(s) 559
Tsp45I GTSAC 2 cut(s) 181, 310
TspDTI ATGAA 1 cut(s) 666
VneI GTGCAC 1 cut(s) 419
XmiI GTMKAC 2 cut(s) 207, 252
XmnI GAANNNNTTC 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.