FvH4_7g17770

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0017560
Physical Location & Seq
Forward (+)
14995391 .. 14996695
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17770.t1

Sequence Viewer

Length: 741 bp
ATGGCATGCGCAGAAGAGCAACACCACCTTCCTCCAGAATCACCACCACCACCACCACCACAACAGCAGCCACAAAACCACCTTCCGGCAAGCAAAATGTGCCCGGACCATAAACACCGGAAAAACAAGGATGCTTACTCATCAAACTACCACCAAACCAGTGGCTCCTACAGAGCTCTCTGCACCTGCCTCACCATCCTCCTCCTCCTCATCGGCGCCACCGCTCTGACGCTCTGGCTCATCTACCGCCCCCACAAGCCACAGTTCACCGTCGCCGCGGCCGCTATCTACTCCCTCAACGCCACATCCCCTCCCTCACAAATCTCCACCACCATGCAGTTCACCATCGTCACCCGCAACCCTAACCGCAGAGTCTCCATCCGCTACGACCGTCTCCAGGCTTTCGTGGCCTACCGCAACCAGGCCATCACCCAGCAGGTGATGCTTCCCCCGTTAGTGCACGGGCGCCGCAGCAGCGTGGCTGTGTCGCCAGTGCTTGGGGGAGTGGCAGTTCCGGTGTCGATGGAGGTGATGAATGGATTGGTGATGGACGAGGCGTATGGGGTGATGAGGCTGAGGGTGGTGGTGGTGGGGAGGCTGAGGTGGAAGGTGACGGGGTTGAATATAAAGACGGGGCATTATGGGATCTATGTCAAGTGTGATGTGTTGGTTGGGTTGAAGAAAGGGTTTGTGGGTCAAGTTCCATTGCTGGGTACTCCTGCTTGTAAAGTCGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

247

Amino Acids

27.13

Weight (kDa)

9.85

Isoelectric Point (pI)

60.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 119 - 219 7e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017560)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01410
fragaria_vesca FvH4_7g17770
malus_domestica MD07G1160200.v1.1
prunus_persica Prupe.2G198600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0361161
rosa_laevigata RLG00000027744
rosa_multiflora Rmu_co8099248.1_g000001 Rmu_sc0002511.1_g000001
rosa_roxburghii Rroxscaffold_4G00295350
rosa_rugosa Rorug01G0286600
rosa_samantha Rh6CG298900
rosa_wichuraiana Rw1G026330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 194, 427
Acc16I TGCGCA 1 cut(s) 10
Acc36I ACCTGC 2 cut(s) 194, 427
AccB1I GGYRCC 2 cut(s) 215, 465
AccB7I CCANNNNNTGG 1 cut(s) 497
AccBSI CCGCTC 1 cut(s) 224
AccII CGCG 1 cut(s) 278
AclWI GGATC 1 cut(s) 653
AcoI YGGCCR 1 cut(s) 279
AcyI GRCGYC 2 cut(s) 216, 466
AfaI GTAC 1 cut(s) 715
AfiI CCNNNNNNNGG 5 cut(s) 85, 397, 421, 497, 710
AgsI TTSAA 2 cut(s) 622, 679
AjnI CCWGG 2 cut(s) 396, 420
AloI GAACNNNNNNTCC 2 cut(s) 495, 527
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw21I GWGCWC 2 cut(s) 178, 462
Alw26I GTCTC 2 cut(s) 379, 398
Alw44I GTGCAC 1 cut(s) 458
AlwI GGATC 1 cut(s) 653
AoxI GGCC 3 cut(s) 279, 408, 423
ApaLI GTGCAC 1 cut(s) 458
ApeKI GCWGC 3 cut(s) 67, 471, 474
AspLEI GCGC 3 cut(s) 11, 218, 468
AspS9I GGNCC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 104
AvaII GGWCC 1 cut(s) 106
BaeGI GKGCMC 2 cut(s) 104, 462
BanI GGYRCC 2 cut(s) 215, 465
BanII GRGCYC 1 cut(s) 178
Bbv12I GWGCWC 2 cut(s) 178, 462
BbvCI CCTCAGC 2 cut(s) 575, 599
BbvI GCAGC 3 cut(s) 79, 483, 486
BccI CCATC 6 cut(s) 203, 353, 386, 434, 517, 541
BciT130I CCWGG 2 cut(s) 398, 422
BcnI CCSGG 1 cut(s) 104
BcoDI GTCTC 2 cut(s) 379, 398
BfmI CTRYAG 1 cut(s) 169
BfoI RGCGCY 2 cut(s) 219, 469
BfuAI ACCTGC 2 cut(s) 194, 427
BisI GCNGC 7 cut(s) 68, 276, 279, 282, 469, 472, 475
BlsI GCNGC 7 cut(s) 69, 277, 280, 283, 470, 473, 476
Bme1390I CCNGG 3 cut(s) 104, 398, 422
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 3 cut(s) 166, 217, 467
BmrFI CCNGG 3 cut(s) 104, 398, 422
BmsI GCATC 2 cut(s) 121, 432
BpmI CTGGAG 2 cut(s) 18, 380
Bpu10I CCTNAGC 2 cut(s) 575, 599
BpuMI CCSGG 1 cut(s) 104
BsaHI GRCGYC 2 cut(s) 216, 466
BsaJI CCNNGG 1 cut(s) 276
BsaWI WCCGGW 2 cut(s) 117, 514
BsaXI ACNNNNNCTCC 4 cut(s) 295, 325, 495, 525
Bsc4I CCNNNNNNNGG 5 cut(s) 85, 397, 421, 497, 710
Bse1I ACTGG 2 cut(s) 159, 491
Bse3DI GCAATG 1 cut(s) 704
BseBI CCWGG 2 cut(s) 398, 422
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 4 cut(s) 136, 195, 305, 378
BseLI CCNNNNNNNGG 5 cut(s) 85, 397, 421, 497, 710
BseMI GCAATG 1 cut(s) 704
BseMII CTCAG 2 cut(s) 566, 590
BseNI ACTGG 2 cut(s) 159, 491
BseRI GAGGAG 3 cut(s) 191, 194, 197
BseSI GKGCMC 2 cut(s) 104, 462
BseX3I CGGCCG 1 cut(s) 279
BseXI GCAGC 3 cut(s) 79, 483, 486
BseYI CCCAGC 2 cut(s) 432, 709
BsgI GTGCAG 1 cut(s) 166
Bsh1236I CGCG 1 cut(s) 278
Bsh1285I CGRYCG 2 cut(s) 282, 391
BshFI GGCC 3 cut(s) 281, 410, 425
BshNI GGYRCC 2 cut(s) 215, 465
BsiEI CGRYCG 2 cut(s) 282, 391
BsiHKAI GWGCWC 2 cut(s) 178, 462
BsiSI CCGG 4 cut(s) 86, 104, 118, 515
BslI CCNNNNNNNGG 5 cut(s) 85, 397, 421, 497, 710
BsmAI GTCTC 2 cut(s) 379, 398
BsmBI CGTCTC 1 cut(s) 398
BsnI GGCC 3 cut(s) 281, 410, 425
Bsp1286I GDGCHC 3 cut(s) 104, 178, 462
Bsp143I GATC 1 cut(s) 645
BspANI GGCC 3 cut(s) 281, 410, 425
BspCNI CTCAG 2 cut(s) 567, 591
BspFNI CGCG 1 cut(s) 278
BspLI GGNNCC 3 cut(s) 166, 217, 467
BspMI ACCTGC 2 cut(s) 194, 427
BspPI GGATC 1 cut(s) 653
BspQI GCTCTTC 1 cut(s) 9
BspT107I GGYRCC 2 cut(s) 215, 465
BsrBI CCGCTC 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 704
BsrI ACTGG 2 cut(s) 159, 491
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 1 cut(s) 645
BssNI GRCGYC 2 cut(s) 216, 466
Bst2UI CCWGG 2 cut(s) 398, 422
Bst4CI ACNGT 3 cut(s) 264, 271, 392
Bst6I CTCTTC 1 cut(s) 9
BstACI GRCGYC 2 cut(s) 216, 466
BstAPI GCANNNNNTGC 2 cut(s) 99, 442
BstC8I GCNNGC 2 cut(s) 7, 91
BstDEI CTNAG 2 cut(s) 575, 599
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 4 cut(s) 136, 195, 305, 378
BstFNI CGCG 1 cut(s) 278
BstH2I RGCGCY 2 cut(s) 219, 469
BstHHI GCGC 3 cut(s) 11, 218, 468
BstKTI GATC 1 cut(s) 648
BstMAI GTCTC 2 cut(s) 379, 398
BstMBI GATC 1 cut(s) 645
BstMCI CGRYCG 2 cut(s) 282, 391
BstMWI GCNNNNNNNGC 5 cut(s) 99, 281, 407, 442, 474
BstNI CCWGG 2 cut(s) 398, 422
BstNSI RCATGY 1 cut(s) 9
BstSCI CCNGG 3 cut(s) 102, 396, 420
BstSFI CTRYAG 1 cut(s) 169
BstSLI GKGCMC 2 cut(s) 104, 462
BstUI CGCG 1 cut(s) 278
BstV1I GCAGC 3 cut(s) 79, 483, 486
BstX2I RGATCY 1 cut(s) 645
BstXI CCANNNNNNTGG 1 cut(s) 161
BstYI RGATCY 1 cut(s) 645
BstZI CGGCCG 1 cut(s) 279
BsuRI GGCC 3 cut(s) 281, 410, 425
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 4 cut(s) 136, 195, 305, 378
BtsIMutI CAGTG 2 cut(s) 166, 498
BveI ACCTGC 2 cut(s) 194, 427
Cac8I GCNNGC 2 cut(s) 7, 91
CciNI GCGGCCGC 1 cut(s) 279
CfoI GCGC 3 cut(s) 11, 218, 468
Cfr13I GGNCC 1 cut(s) 106
Cfr42I CCGCGG 1 cut(s) 279
CseI GACGC 1 cut(s) 238
Csp6I GTAC 1 cut(s) 714
CviAII CATG 2 cut(s) 6, 334
CviQI GTAC 1 cut(s) 714
DdeI CTNAG 2 cut(s) 575, 599
DinI GGCGCC 2 cut(s) 217, 467
DpnI GATC 1 cut(s) 647
DpnII GATC 1 cut(s) 645
EaeI YGGCCR 1 cut(s) 279
EagI CGGCCG 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Ecl136II GAGCTC 1 cut(s) 176
EclXI CGGCCG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 106
Eco52I CGGCCG 1 cut(s) 279
Eco53kI GAGCTC 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 176
EcoRII CCWGG 2 cut(s) 396, 420
EcoT38I GRGCYC 1 cut(s) 178
EgeI GGCGCC 2 cut(s) 217, 467
EheI GGCGCC 2 cut(s) 217, 467
Esp3I CGTCTC 1 cut(s) 398
FaeI CATG 2 cut(s) 9, 337
FaiI YATR 9 cut(s) 7, 111, 335, 561, 626, 642, 651, 737, 739
FatI CATG 2 cut(s) 5, 333
FauI CCCGC 1 cut(s) 362
Fnu4HI GCNGC 7 cut(s) 68, 276, 279, 282, 469, 472, 475
FokI GGATG 4 cut(s) 143, 182, 292, 365
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 7 cut(s) 68, 276, 279, 282, 469, 472, 475
FspI TGCGCA 1 cut(s) 10
GlaI GCGC 3 cut(s) 10, 217, 467
GluI GCNGC 7 cut(s) 68, 276, 279, 282, 469, 472, 475
GsaI CCCAGC 2 cut(s) 436, 713
GsuI CTGGAG 2 cut(s) 18, 380
HaeII RGCGCY 2 cut(s) 219, 469
HaeIII GGCC 3 cut(s) 281, 410, 425
HapII CCGG 4 cut(s) 86, 104, 118, 515
HgaI GACGC 1 cut(s) 238
HhaI GCGC 3 cut(s) 11, 218, 468
Hin1I GRCGYC 2 cut(s) 216, 466
Hin1II CATG 2 cut(s) 9, 337
Hin6I GCGC 3 cut(s) 9, 216, 466
HinP1I GCGC 3 cut(s) 9, 216, 466
HinfI GANTC 2 cut(s) 38, 372
HpaII CCGG 4 cut(s) 86, 104, 118, 515
Hpy166II GTNNAC 3 cut(s) 267, 342, 460
Hpy188I TCNGA 1 cut(s) 228
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 3 cut(s) 267, 342, 460
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 3 cut(s) 38, 92, 601
HpyCH4III ACNGT 3 cut(s) 264, 271, 392
HpyCH4V TGCA 3 cut(s) 183, 337, 460
HpyF10VI GCNNNNNNNGC 5 cut(s) 99, 281, 407, 442, 474
HpyF3I CTNAG 2 cut(s) 575, 599
Hsp92I GRCGYC 2 cut(s) 216, 466
Hsp92II CATG 2 cut(s) 9, 337
HspAI GCGC 3 cut(s) 9, 216, 466
KasI GGCGCC 2 cut(s) 215, 465
KspI CCGCGG 1 cut(s) 279
Kzo9I GATC 1 cut(s) 645
LguI GCTCTTC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 170
Lsp1109I GCAGC 3 cut(s) 79, 483, 486
LweI GCATC 2 cut(s) 121, 432
MaeIII GTNAC 2 cut(s) 349, 610
MalI GATC 1 cut(s) 647
MbiI CCGCTC 1 cut(s) 224
MboI GATC 1 cut(s) 645
MboII GAAGA 2 cut(s) 26, 691
MflI RGATCY 1 cut(s) 645
MhlI GDGCHC 3 cut(s) 104, 178, 462
Mly113I GGCGCC 2 cut(s) 216, 466
MlyI GAGTC 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 332
MspA1I CMGCKG 1 cut(s) 278
MspI CCGG 4 cut(s) 86, 104, 118, 515
MspR9I CCNGG 3 cut(s) 104, 398, 422
MvaI CCWGG 2 cut(s) 398, 422
MvnI CGCG 1 cut(s) 278
MwoI GCNNNNNNNGC 5 cut(s) 99, 281, 407, 442, 474
NarI GGCGCC 2 cut(s) 216, 466
NciI CCSGG 1 cut(s) 104
NdeII GATC 1 cut(s) 645
NlaIII CATG 2 cut(s) 9, 337
NlaIV GGNNCC 3 cut(s) 166, 217, 467
NmuCI GTSAC 2 cut(s) 349, 610
NotI GCGGCCGC 1 cut(s) 279
NsbI TGCGCA 1 cut(s) 10
NspI RCATGY 1 cut(s) 9
PaeI GCATGC 1 cut(s) 9
PaqCI CACCTGC 2 cut(s) 194, 427
PciSI GCTCTTC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 38
PflMI CCANNNNNTGG 1 cut(s) 497
PkrI GCNGC 7 cut(s) 69, 277, 280, 283, 470, 473, 476
PleI GAGTC 1 cut(s) 380
PluTI GGCGCC 2 cut(s) 219, 469
PpsI GAGTC 1 cut(s) 380
Psp124BI GAGCTC 1 cut(s) 178
Psp6I CCWGG 2 cut(s) 396, 420
PspFI CCCAGC 2 cut(s) 432, 709
PspGI CCWGG 2 cut(s) 396, 420
PspN4I GGNNCC 3 cut(s) 166, 217, 467
PspPI GGNCC 1 cut(s) 106
PsuI RGATCY 1 cut(s) 645
RsaI GTAC 1 cut(s) 715
RsaNI GTAC 1 cut(s) 714
RseI CAYNNNNRTG 1 cut(s) 332
SacI GAGCTC 1 cut(s) 178
SacII CCGCGG 1 cut(s) 279
SapI GCTCTTC 1 cut(s) 9
SatI GCNGC 7 cut(s) 68, 276, 279, 282, 469, 472, 475
Sau3AI GATC 1 cut(s) 645
Sau96I GGNCC 1 cut(s) 106
SchI GAGTC 1 cut(s) 381
ScrFI CCNGG 3 cut(s) 104, 398, 422
SduI GDGCHC 3 cut(s) 104, 178, 462
SetI ASST 8 cut(s) 30, 84, 178, 188, 441, 531, 605, 612
SfaNI GCATC 2 cut(s) 121, 432
SfcI CTRYAG 1 cut(s) 169
SfoI GGCGCC 2 cut(s) 217, 467
Sfr303I CCGCGG 1 cut(s) 279
SgrBI CCGCGG 1 cut(s) 279
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 332
SphI GCATGC 1 cut(s) 9
SspDI GGCGCC 2 cut(s) 215, 465
SstI GAGCTC 1 cut(s) 178
StyD4I CCNGG 3 cut(s) 102, 396, 420
TaaI ACNGT 3 cut(s) 264, 271, 392
TaqI TCGA 2 cut(s) 521, 732
TauI GCSGC 4 cut(s) 278, 281, 284, 471
TfiI GAWTC 1 cut(s) 38
TscAI CASTG 2 cut(s) 166, 498
TseFI GTSAC 2 cut(s) 349, 610
TseI GCWGC 3 cut(s) 67, 471, 474
Tsp45I GTSAC 2 cut(s) 349, 610
TspDTI ATGAA 1 cut(s) 548
TspRI CASTG 2 cut(s) 166, 498
Van91I CCANNNNNTGG 1 cut(s) 497
VneI GTGCAC 1 cut(s) 458
VpaK11BI GGWCC 1 cut(s) 106
XceI RCATGY 1 cut(s) 9
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.