Rorug01G0286600

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0017560
Physical Location & Seq
Reverse (-)
40128535 .. 40130048
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0286600.1

Sequence Viewer

Length: 642 bp
ATGTCAAACCCCAGAGCACCCTTTTCCTTCCTCGTCGCTGTTCTCGTTTTCTTTATTCTACCCCTCATCTTTTCCCAAAATGGCGGATACGTCCGGTTCGCCGAGGGAGGAAAGCGGCGAGTCCACATCACCGACGACCTCGACGACGTCGTAGACGACGAAGAGGACGACACTTGGAAAGAATGGGGCAAGAAATCCACACAAACCTTCGATCCGCCGCCGAACGACTTGTCGAAGATGGAGTTATCGGAGATCCAGGCCGAGATGATGAAGCGGCATTCCGGGCCGGTTTTCGGGTTCATCAAGCTCCGACTCGGCGTCAAACGGACTCGGGATATGGTGGCTGAGATTGCTATGAAATGGAGTAAAGTTTTGAGAACAGGATCTATTGGGGTACGGTTCATGGGTGTTGATATGAGCACGATCATGGTCACCATGGAAAGAGGCCAAGACATGACAGAGTTGAAGGAGTTTGTGTTGAACCAACCAGAGGCCTACGAGATAAAGATTGGAGATCAAGTTTTTAGAAGACCTGGGGATCCTCCTTTAGACCAAGTCGTTGAGAAGCTCCAGAATGAGAGAAAGAGCATCGAGAATGACGGTTCAACAGAGAGCAATCGGCAAGTGAAAGAGGAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

213

Amino Acids

24.4

Weight (kDa)

5.17

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017560)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01410
fragaria_vesca FvH4_7g17770
malus_domestica MD07G1160200.v1.1
prunus_persica Prupe.2G198600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0361161
rosa_laevigata RLG00000027744
rosa_multiflora Rmu_co8099248.1_g000001 Rmu_sc0002511.1_g000001
rosa_roxburghii Rroxscaffold_4G00295350
rosa_rugosa Rorug01G0286600
rosa_samantha Rh6CG298900
rosa_wichuraiana Rw1G026330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 150
AccI GTMKAC 1 cut(s) 153
AciI CCGC 5 cut(s) 84, 115, 215, 218, 274
AclWI GGATC 5 cut(s) 206, 247, 391, 533, 546
AcyI GRCGYC 2 cut(s) 147, 318
AfaI GTAC 1 cut(s) 396
AfiI CCNNNNNNNGG 2 cut(s) 293, 490
AgsI TTSAA 3 cut(s) 466, 481, 606
AhdI GACNNNNNGTC 1 cut(s) 317
AjnI CCWGG 2 cut(s) 255, 532
AluBI AGCT 2 cut(s) 307, 568
AluI AGCT 2 cut(s) 307, 568
Alw21I GWGCWC 2 cut(s) 19, 422
AlwI GGATC 5 cut(s) 206, 247, 391, 533, 546
Ama87I CYCGRG 1 cut(s) 330
AoxI GGCC 4 cut(s) 258, 284, 445, 492
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
AspS9I GGNCC 1 cut(s) 284
AsuC2I CCSGG 1 cut(s) 283
AsuHPI GGTGA 2 cut(s) 121, 424
AvaI CYCGRG 1 cut(s) 330
BamHI GGATCC 1 cut(s) 538
BbsI GAAGAC 1 cut(s) 535
Bbv12I GWGCWC 2 cut(s) 19, 422
BccI CCATC 1 cut(s) 232
BciT130I CCWGG 2 cut(s) 257, 534
BciVI GTATCC 1 cut(s) 80
BcnI CCSGG 1 cut(s) 283
BfuI GTATCC 1 cut(s) 80
BisI GCNGC 3 cut(s) 116, 218, 275
BlsI GCNGC 3 cut(s) 117, 219, 276
Bme1390I CCNGG 3 cut(s) 257, 283, 534
BmeRI GACNNNNNGTC 1 cut(s) 317
BmeT110I CYCGRG 1 cut(s) 330
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 1 cut(s) 540
BmrFI CCNGG 3 cut(s) 257, 283, 534
BmsI GCATC 1 cut(s) 597
BpiI GAAGAC 1 cut(s) 535
BpmI CTGGAG 1 cut(s) 554
BpuMI CCSGG 1 cut(s) 283
BsaHI GRCGYC 2 cut(s) 147, 318
BsaJI CCNNGG 3 cut(s) 102, 435, 533
BsaWI WCCGGW 1 cut(s) 93
BsaXI ACNNNNNCTCC 4 cut(s) 461, 491, 504, 534
Bsc4I CCNNNNNNNGG 2 cut(s) 293, 490
Bse118I RCCGGY 1 cut(s) 286
BseBI CCWGG 2 cut(s) 257, 534
BseDI CCNNGG 3 cut(s) 102, 435, 533
BseLI CCNNNNNNNGG 2 cut(s) 293, 490
BseMII CTCAG 1 cut(s) 336
BshFI GGCC 4 cut(s) 260, 286, 447, 494
BsiHKAI GWGCWC 2 cut(s) 19, 422
BsiHKCI CYCGRG 1 cut(s) 330
BsiSI CCGG 3 cut(s) 94, 282, 287
BslI CCNNNNNNNGG 2 cut(s) 293, 490
BsmI GAATGC 1 cut(s) 277
BsnI GGCC 4 cut(s) 260, 286, 447, 494
BsoBI CYCGRG 1 cut(s) 330
Bsp1286I GDGCHC 2 cut(s) 19, 422
Bsp143I GATC 6 cut(s) 211, 252, 383, 423, 514, 538
Bsp19I CCATGG 1 cut(s) 435
BspACI CCGC 5 cut(s) 84, 115, 215, 218, 274
BspANI GGCC 4 cut(s) 260, 286, 447, 494
BspCNI CTCAG 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 540
BspPI GGATC 5 cut(s) 206, 247, 391, 533, 546
BsrFI RCCGGY 1 cut(s) 286
BssAI RCCGGY 1 cut(s) 286
BssECI CCNNGG 3 cut(s) 102, 435, 533
BssMI GATC 6 cut(s) 211, 252, 383, 423, 514, 538
BssNI GRCGYC 2 cut(s) 147, 318
BssT1I CCWWGG 1 cut(s) 435
Bst2UI CCWGG 2 cut(s) 257, 534
Bst4CI ACNGT 2 cut(s) 399, 602
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 2 cut(s) 147, 318
BstDEI CTNAG 1 cut(s) 345
BstDSI CCRYGG 1 cut(s) 435
BstEII GGTNACC 1 cut(s) 430
BstKTI GATC 6 cut(s) 214, 255, 386, 426, 517, 541
BstMBI GATC 6 cut(s) 211, 252, 383, 423, 514, 538
BstMWI GCNNNNNNNGC 2 cut(s) 283, 350
BstNI CCWGG 2 cut(s) 257, 534
BstPI GGTNACC 1 cut(s) 430
BstSCI CCNGG 3 cut(s) 255, 281, 532
BstV2I GAAGAC 1 cut(s) 535
BstX2I RGATCY 3 cut(s) 252, 383, 538
BstYI RGATCY 3 cut(s) 252, 383, 538
BsuI GTATCC 1 cut(s) 80
BsuRI GGCC 4 cut(s) 260, 286, 447, 494
BtgI CCRYGG 1 cut(s) 435
Cfr10I RCCGGY 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 284
CseI GACGC 1 cut(s) 307
Csp6I GTAC 1 cut(s) 395
CviAII CATG 4 cut(s) 403, 427, 436, 454
CviJI RGCY 7 cut(s) 260, 286, 307, 344, 447, 494, 568
CviKI_1 RGCY 7 cut(s) 260, 286, 307, 344, 447, 494, 568
CviQI GTAC 1 cut(s) 395
DdeI CTNAG 1 cut(s) 345
DpnI GATC 6 cut(s) 213, 254, 385, 425, 516, 540
DpnII GATC 6 cut(s) 211, 252, 383, 423, 514, 538
DriI GACNNNNNGTC 1 cut(s) 317
Eam1104I CTCTTC 1 cut(s) 156
Eam1105I GACNNNNNGTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 156
EciI GGCGGA 2 cut(s) 99, 204
Eco130I CCWWGG 1 cut(s) 435
Eco147I AGGCCT 1 cut(s) 494
Eco88I CYCGRG 1 cut(s) 330
Eco91I GGTNACC 1 cut(s) 430
EcoO65I GGTNACC 1 cut(s) 430
EcoRII CCWGG 2 cut(s) 255, 532
EcoT14I CCWWGG 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 435
FaeI CATG 4 cut(s) 406, 430, 439, 457
FaiI YATR 7 cut(s) 338, 356, 404, 416, 428, 437, 455
FatI CATG 4 cut(s) 402, 426, 435, 453
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 3 cut(s) 116, 218, 275
Fsp4HI GCNGC 3 cut(s) 116, 218, 275
GluI GCNGC 3 cut(s) 116, 218, 275
GsuI CTGGAG 1 cut(s) 554
HaeIII GGCC 4 cut(s) 260, 286, 447, 494
HapII CCGG 3 cut(s) 94, 282, 287
HgaI GACGC 1 cut(s) 307
Hin1I GRCGYC 2 cut(s) 147, 318
Hin1II CATG 4 cut(s) 406, 430, 439, 457
HinfI GANTC 3 cut(s) 120, 312, 328
HpaII CCGG 3 cut(s) 94, 282, 287
HphI GGTGA 2 cut(s) 121, 424
Hpy166II GTNNAC 2 cut(s) 124, 154
Hpy188I TCNGA 2 cut(s) 250, 311
Hpy188III TCNNGA 3 cut(s) 332, 571, 592
Hpy8I GTNNAC 2 cut(s) 124, 154
Hpy99I CGWCG 6 cut(s) 38, 137, 146, 149, 152, 161
HpyAV CCTTC 3 cut(s) 37, 217, 460
HpyCH4III ACNGT 2 cut(s) 399, 602
HpyCH4IV ACGT 2 cut(s) 90, 147
HpyF10VI GCNNNNNNNGC 2 cut(s) 283, 350
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 2 cut(s) 90, 147
Hsp92I GRCGYC 2 cut(s) 147, 318
Hsp92II CATG 4 cut(s) 406, 430, 439, 457
Kzo9I GATC 6 cut(s) 211, 252, 383, 423, 514, 538
LmnI GCTCC 2 cut(s) 312, 573
LweI GCATC 1 cut(s) 597
MaeII ACGT 2 cut(s) 90, 147
MaeIII GTNAC 1 cut(s) 430
MalI GATC 6 cut(s) 213, 254, 385, 425, 516, 540
MboI GATC 6 cut(s) 211, 252, 383, 423, 514, 538
MboII GAAGA 3 cut(s) 173, 247, 540
MflI RGATCY 3 cut(s) 252, 383, 538
MhlI GDGCHC 2 cut(s) 19, 422
MluCI AATT 1 cut(s) 635
MlyI GAGTC 3 cut(s) 129, 306, 322
MmeI TCCRAC 1 cut(s) 334
MslI CAYNNNNRTG 1 cut(s) 425
MspI CCGG 3 cut(s) 94, 282, 287
MspR9I CCNGG 3 cut(s) 257, 283, 534
Mva1269I GAATGC 1 cut(s) 277
MvaI CCWGG 2 cut(s) 257, 534
MwoI GCNNNNNNNGC 2 cut(s) 283, 350
NciI CCSGG 1 cut(s) 283
NcoI CCATGG 1 cut(s) 435
NdeII GATC 6 cut(s) 211, 252, 383, 423, 514, 538
NlaIII CATG 4 cut(s) 406, 430, 439, 457
NlaIV GGNNCC 1 cut(s) 540
NmeAIII GCCGAG 3 cut(s) 127, 286, 294
NmuCI GTSAC 1 cut(s) 430
PceI AGGCCT 1 cut(s) 494
PcsI WCGNNNNNNNCGW 6 cut(s) 42, 141, 147, 153, 156, 165
PctI GAATGC 1 cut(s) 277
PflFI GACNNNGTC 2 cut(s) 146, 554
PkrI GCNGC 3 cut(s) 117, 219, 276
PleI GAGTC 3 cut(s) 128, 306, 322
PpsI GAGTC 3 cut(s) 128, 306, 322
Psp6I CCWGG 2 cut(s) 255, 532
PspEI GGTNACC 1 cut(s) 430
PspGI CCWGG 2 cut(s) 255, 532
PspN4I GGNNCC 1 cut(s) 540
PspPI GGNCC 1 cut(s) 284
PsuI RGATCY 3 cut(s) 252, 383, 538
PsyI GACNNNGTC 2 cut(s) 146, 554
RsaI GTAC 1 cut(s) 396
RsaNI GTAC 1 cut(s) 395
RseI CAYNNNNRTG 1 cut(s) 425
SatI GCNGC 3 cut(s) 116, 218, 275
Sau3AI GATC 6 cut(s) 211, 252, 383, 423, 514, 538
Sau96I GGNCC 1 cut(s) 284
SchI GAGTC 3 cut(s) 129, 306, 322
ScrFI CCNGG 3 cut(s) 257, 283, 534
SduI GDGCHC 2 cut(s) 19, 422
SetI ASST 7 cut(s) 93, 141, 150, 209, 309, 535, 570
SfaNI GCATC 1 cut(s) 597
SmiMI CAYNNNNRTG 1 cut(s) 425
Sse9I AATT 1 cut(s) 635
SseBI AGGCCT 1 cut(s) 494
SsiI CCGC 5 cut(s) 84, 115, 215, 218, 274
StuI AGGCCT 1 cut(s) 494
StyD4I CCNGG 3 cut(s) 255, 281, 532
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 2 cut(s) 399, 602
TaiI ACGT 2 cut(s) 93, 150
TaqI TCGA 4 cut(s) 141, 210, 233, 591
TasI AATT 1 cut(s) 635
TauI GCSGC 3 cut(s) 118, 220, 277
TseFI GTSAC 1 cut(s) 430
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 4 cut(s) 284, 289, 371, 391
TspGWI ACGGA 1 cut(s) 340
Tth111I GACNNNGTC 2 cut(s) 146, 554
XmiI GTMKAC 1 cut(s) 153
ZraI GACGTC 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.