Rroxscaffold_4G00295350

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0017560
Physical Location & Seq
Reverse (-)
15395438 .. 15396180
743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00295350.1

Sequence Viewer

Length: 627 bp
ATGGCAGCAGAGCAAGACCACCACCTTCCTCCAGAGTCATCACCAGAGCAAAACCACCACCCTCGTCCAGATTCACCAAAACAACCACAAAACAACCACCTTCCACCACCCGAAATGATTCAGGACCGAAATATAAAAGAATGTAATATGCATCACCAAACCAGTGAACCCTACAGAGCTCTCTGCACCTGCCTCACCATCCTCCTCCTCATCCTCGGCGCCACCGCCCTCACGCTCTGGCTCGTTTACCGCCCCCACAAGCCGCAGTTCACCGTCGCCGCGGTCGCCATCTACTCCCTCAACGCCACCTCCCCTCCCTCCCAAATCTCCACCACCATGCAGTTCACCATCGTCACGCGCAACCCCAACCGGAGGGTCTCCATCCGCTACGACCGTCTCCAGGCCTTTGTGGCCTATCGCAACCAAGCCATTACCCAGCAGGCGTACGGGGTGGTGAAGCTGAGGGTGGTGGTGGTGGGGAGGCTGAGGTGGAAGGTGACGGGGTTGGGGATAAGGACCGGGCATTATGGGATCTATGTCAAGTGTGATTTGCTGGTTGGGTTGAAGAAAGGGTTCGTAGGTCAAGTTCCATTGCTGGGTTCTCCTGATTGTAAAGTTGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

208

Amino Acids

23.4

Weight (kDa)

9.61

Isoelectric Point (pI)

57.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017560)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01410
fragaria_vesca FvH4_7g17770
malus_domestica MD07G1160200.v1.1
prunus_persica Prupe.2G198600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0361161
rosa_laevigata RLG00000027744
rosa_multiflora Rmu_co8099248.1_g000001 Rmu_sc0002511.1_g000001
rosa_roxburghii Rroxscaffold_4G00295350
rosa_rugosa Rorug01G0286600
rosa_samantha Rh6CG298900
rosa_wichuraiana Rw1G026330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 197
Acc36I ACCTGC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 218
AccII CGCG 2 cut(s) 281, 358
AciI CCGC 6 cut(s) 225, 250, 263, 279, 281, 385
AclWI GGATC 1 cut(s) 539
AcyI GRCGYC 1 cut(s) 219
AfaI GTAC 1 cut(s) 446
AfiI CCNNNNNNNGG 3 cut(s) 372, 400, 596
AgsI TTSAA 1 cut(s) 565
AjnI CCWGG 1 cut(s) 399
AluBI AGCT 2 cut(s) 179, 460
AluI AGCT 2 cut(s) 179, 460
Alw21I GWGCWC 1 cut(s) 181
Alw26I GTCTC 2 cut(s) 382, 401
AlwI GGATC 1 cut(s) 539
AoxI GGCC 2 cut(s) 402, 411
ApeKI GCWGC 1 cut(s) 5
Asp700I GAANNNNTTC 2 cut(s) 117, 572
AspLEI GCGC 2 cut(s) 221, 360
AspS9I GGNCC 2 cut(s) 124, 516
AsuC2I CCSGG 1 cut(s) 520
AsuHPI GGTGA 8 cut(s) 33, 66, 146, 187, 262, 337, 466, 508
AvaII GGWCC 2 cut(s) 124, 516
BanI GGYRCC 1 cut(s) 218
BanII GRGCYC 1 cut(s) 181
Bbv12I GWGCWC 1 cut(s) 181
BbvCI CCTCAGC 2 cut(s) 461, 485
BbvI GCAGC 1 cut(s) 17
BccI CCATC 4 cut(s) 206, 296, 356, 389
BciT130I CCWGG 1 cut(s) 401
BcnI CCSGG 1 cut(s) 520
BcoDI GTCTC 2 cut(s) 382, 401
BfmI CTRYAG 1 cut(s) 172
BfoI RGCGCY 1 cut(s) 222
BfuAI ACCTGC 1 cut(s) 197
BglI GCCNNNNNGGC 1 cut(s) 410
BisI GCNGC 3 cut(s) 6, 263, 279
BlsI GCNGC 3 cut(s) 7, 264, 280
Bme1390I CCNGG 2 cut(s) 401, 520
Bme18I GGWCC 2 cut(s) 124, 516
BmgT120I GGNCC 2 cut(s) 124, 516
BmiI GGNNCC 1 cut(s) 220
BmrFI CCNGG 2 cut(s) 401, 520
BmsI GCATC 1 cut(s) 160
BpmI CTGGAG 2 cut(s) 15, 383
Bpu10I CCTNAGC 2 cut(s) 461, 485
BpuMI CCSGG 1 cut(s) 520
BsaHI GRCGYC 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 382
BsaJI CCNNGG 2 cut(s) 214, 279
BsaWI WCCGGW 1 cut(s) 369
BsaXI ACNNNNNCTCC 4 cut(s) 293, 298, 323, 328
Bsc4I CCNNNNNNNGG 3 cut(s) 372, 400, 596
Bse1I ACTGG 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 590
BseBI CCWGG 1 cut(s) 401
BseDI CCNNGG 2 cut(s) 214, 279
BseGI GGATG 3 cut(s) 198, 210, 381
BseLI CCNNNNNNNGG 3 cut(s) 372, 400, 596
BseMI GCAATG 1 cut(s) 590
BseMII CTCAG 2 cut(s) 452, 476
BseNI ACTGG 1 cut(s) 162
BseRI GAGGAG 2 cut(s) 194, 197
BseXI GCAGC 1 cut(s) 17
BseYI CCCAGC 2 cut(s) 435, 595
BsgI GTGCAG 1 cut(s) 169
Bsh1236I CGCG 2 cut(s) 281, 358
Bsh1285I CGRYCG 2 cut(s) 285, 394
BshFI GGCC 2 cut(s) 404, 413
BshNI GGYRCC 1 cut(s) 218
BsiEI CGRYCG 2 cut(s) 285, 394
BsiHKAI GWGCWC 1 cut(s) 181
BsiSI CCGG 2 cut(s) 370, 519
BsiWI CGTACG 1 cut(s) 444
BslI CCNNNNNNNGG 3 cut(s) 372, 400, 596
BsmAI GTCTC 2 cut(s) 382, 401
BsmBI CGTCTC 1 cut(s) 401
BsnI GGCC 2 cut(s) 404, 413
Bso31I GGTCTC 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 1 cut(s) 531
BspACI CCGC 6 cut(s) 225, 250, 263, 279, 281, 385
BspANI GGCC 2 cut(s) 404, 413
BspCNI CTCAG 2 cut(s) 453, 477
BspFNI CGCG 2 cut(s) 281, 358
BspLI GGNNCC 1 cut(s) 220
BspMI ACCTGC 1 cut(s) 197
BspPI GGATC 1 cut(s) 539
BspT107I GGYRCC 1 cut(s) 218
BspTNI GGTCTC 1 cut(s) 382
BsrDI GCAATG 1 cut(s) 590
BsrI ACTGG 1 cut(s) 162
BssECI CCNNGG 2 cut(s) 214, 279
BssMI GATC 1 cut(s) 531
BssNI GRCGYC 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 2 cut(s) 274, 395
BstACI GRCGYC 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 441
BstDEI CTNAG 2 cut(s) 461, 485
BstDSI CCRYGG 1 cut(s) 279
BstF5I GGATG 3 cut(s) 198, 210, 381
BstFNI CGCG 2 cut(s) 281, 358
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 2 cut(s) 221, 360
BstKTI GATC 1 cut(s) 534
BstMAI GTCTC 2 cut(s) 382, 401
BstMBI GATC 1 cut(s) 531
BstMCI CGRYCG 2 cut(s) 285, 394
BstMWI GCNNNNNNNGC 2 cut(s) 284, 410
BstNI CCWGG 1 cut(s) 401
BstSCI CCNGG 2 cut(s) 399, 518
BstSFI CTRYAG 1 cut(s) 172
BstUI CGCG 2 cut(s) 281, 358
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 531
BstYI RGATCY 1 cut(s) 531
BsuRI GGCC 2 cut(s) 404, 413
BtgI CCRYGG 1 cut(s) 279
BtsCI GGATG 3 cut(s) 198, 210, 381
BtsIMutI CAGTG 1 cut(s) 169
BveI ACCTGC 1 cut(s) 197
Cac8I GCNNGC 1 cut(s) 441
CfoI GCGC 2 cut(s) 221, 360
Cfr13I GGNCC 2 cut(s) 124, 516
Cfr42I CCGCGG 1 cut(s) 282
Csp6I GTAC 1 cut(s) 445
CviAII CATG 1 cut(s) 337
CviJI RGCY 8 cut(s) 179, 241, 262, 404, 413, 428, 460, 484
CviKI_1 RGCY 8 cut(s) 179, 241, 262, 404, 413, 428, 460, 484
CviQI GTAC 1 cut(s) 445
DdeI CTNAG 2 cut(s) 461, 485
DinI GGCGCC 1 cut(s) 220
DpnI GATC 1 cut(s) 533
DpnII GATC 1 cut(s) 531
Ecl136II GAGCTC 1 cut(s) 179
Eco147I AGGCCT 1 cut(s) 404
Eco24I GRGCYC 1 cut(s) 181
Eco31I GGTCTC 1 cut(s) 382
Eco47I GGWCC 2 cut(s) 124, 516
Eco53kI GAGCTC 1 cut(s) 179
EcoICRI GAGCTC 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 399
EcoT22I ATGCAT 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 181
EgeI GGCGCC 1 cut(s) 220
EheI GGCGCC 1 cut(s) 220
Esp3I CGTCTC 1 cut(s) 401
FaeI CATG 1 cut(s) 340
FaiI YATR 7 cut(s) 134, 149, 338, 528, 537, 623, 625
FatI CATG 1 cut(s) 336
Fnu4HI GCNGC 3 cut(s) 6, 263, 279
FokI GGATG 3 cut(s) 185, 197, 368
FriOI GRGCYC 1 cut(s) 181
Fsp4HI GCNGC 3 cut(s) 6, 263, 279
GlaI GCGC 2 cut(s) 220, 359
GluI GCNGC 3 cut(s) 6, 263, 279
GsaI CCCAGC 2 cut(s) 439, 599
GsuI CTGGAG 2 cut(s) 15, 383
HaeII RGCGCY 1 cut(s) 222
HaeIII GGCC 2 cut(s) 404, 413
HapII CCGG 2 cut(s) 370, 519
HhaI GCGC 2 cut(s) 221, 360
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 1 cut(s) 340
Hin6I GCGC 2 cut(s) 219, 358
HinP1I GCGC 2 cut(s) 219, 358
HinfI GANTC 3 cut(s) 35, 71, 118
HpaII CCGG 2 cut(s) 370, 519
HphI GGTGA 8 cut(s) 33, 66, 146, 187, 262, 337, 466, 508
Hpy166II GTNNAC 4 cut(s) 167, 247, 270, 345
Hpy188III TCNNGA 4 cut(s) 32, 68, 122, 605
Hpy8I GTNNAC 4 cut(s) 167, 247, 270, 345
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 3 cut(s) 35, 110, 487
HpyCH4III ACNGT 2 cut(s) 274, 395
HpyCH4V TGCA 3 cut(s) 151, 186, 340
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 410
HpyF3I CTNAG 2 cut(s) 461, 485
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 1 cut(s) 340
HspAI GCGC 2 cut(s) 219, 358
KasI GGCGCC 1 cut(s) 218
KspI CCGCGG 1 cut(s) 282
Kzo9I GATC 1 cut(s) 531
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 160
MaeIII GTNAC 2 cut(s) 352, 496
MalI GATC 1 cut(s) 533
MboI GATC 1 cut(s) 531
MboII GAAGA 1 cut(s) 577
MflI RGATCY 1 cut(s) 531
MhlI GDGCHC 1 cut(s) 181
Mly113I GGCGCC 1 cut(s) 219
MlyI GAGTC 1 cut(s) 44
Mph1103I ATGCAT 1 cut(s) 153
MroXI GAANNNNTTC 2 cut(s) 117, 572
MslI CAYNNNNRTG 1 cut(s) 335
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 2 cut(s) 370, 519
MspR9I CCNGG 2 cut(s) 401, 520
MvaI CCWGG 1 cut(s) 401
MvnI CGCG 2 cut(s) 281, 358
MwoI GCNNNNNNNGC 2 cut(s) 284, 410
NarI GGCGCC 1 cut(s) 219
NciI CCSGG 1 cut(s) 520
NdeII GATC 1 cut(s) 531
NlaIII CATG 1 cut(s) 340
NlaIV GGNNCC 1 cut(s) 220
NmeAIII GCCGAG 1 cut(s) 195
NmuCI GTSAC 2 cut(s) 352, 496
NsiI ATGCAT 1 cut(s) 153
PaqCI CACCTGC 1 cut(s) 197
PceI AGGCCT 1 cut(s) 404
PdmI GAANNNNTTC 2 cut(s) 117, 572
PfeI GAWTC 2 cut(s) 71, 118
Pfl23II CGTACG 1 cut(s) 444
PkrI GCNGC 3 cut(s) 7, 264, 280
PleI GAGTC 1 cut(s) 43
PluTI GGCGCC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 43
Psp124BI GAGCTC 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 399
PspFI CCCAGC 2 cut(s) 435, 595
PspGI CCWGG 1 cut(s) 399
PspLI CGTACG 1 cut(s) 444
PspN4I GGNNCC 1 cut(s) 220
PspPI GGNCC 2 cut(s) 124, 516
PsrI GAACNNNNNNTAC 2 cut(s) 570, 602
PsuI RGATCY 1 cut(s) 531
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
RseI CAYNNNNRTG 1 cut(s) 335
SacI GAGCTC 1 cut(s) 181
SacII CCGCGG 1 cut(s) 282
SatI GCNGC 3 cut(s) 6, 263, 279
Sau3AI GATC 1 cut(s) 531
Sau96I GGNCC 2 cut(s) 124, 516
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 2 cut(s) 401, 520
SduI GDGCHC 1 cut(s) 181
SetI ASST 9 cut(s) 27, 102, 181, 191, 311, 462, 491, 498, 583
SfaNI GCATC 1 cut(s) 160
SfcI CTRYAG 1 cut(s) 172
SfiI GGCCNNNNNGGCC 1 cut(s) 410
SfoI GGCGCC 1 cut(s) 220
Sfr303I CCGCGG 1 cut(s) 282
SgrBI CCGCGG 1 cut(s) 282
SinI GGWCC 2 cut(s) 124, 516
SmiMI CAYNNNNRTG 1 cut(s) 335
SseBI AGGCCT 1 cut(s) 404
SsiI CCGC 6 cut(s) 225, 250, 263, 279, 281, 385
SspDI GGCGCC 1 cut(s) 218
SstI GAGCTC 1 cut(s) 181
StuI AGGCCT 1 cut(s) 404
StyD4I CCNGG 2 cut(s) 399, 518
TaaI ACNGT 2 cut(s) 274, 395
TaqII GACCGA 1 cut(s) 141
TauI GCSGC 2 cut(s) 265, 281
TfiI GAWTC 2 cut(s) 71, 118
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 2 cut(s) 352, 496
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 352, 496
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 2 cut(s) 124, 516
XmnI GAANNNNTTC 2 cut(s) 117, 572
Zsp2I ATGCAT 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.