MD07G1160200.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0017560
Physical Location & Seq
Forward (+)
23445623 .. 23446264
642 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1160200.v1.1.491

Sequence Viewer

Length: 642 bp
ATGTCAAAAGAATACACTAAGGAAGAAACCCCCGGCCACCACCTCCCTAAAATGACCAAGGACAAACCCAGCGGCCCCTACAGAGCCTTGTGCACCTGCCTCTCCATCTTCCTCCTCCTCGTTGGCGTCACGGCCCTCACCCTCTGGCTCGTCTACCGCCCCCACAAACCCCAGTTCACCATCGTCGGTGCTGCCGTCTACAGCCTCAACGTCACCTCCCCTCCCTTGATCTCCACCGCCATGCAGTTCACCCTCGTCACCAGAAACCCCAACCGCCGCGTCTCCATCTACTACGACCGCCTCTCTGCCTTCGTCGCCTATAAGAACCAGGCGATCACACCGCAGGTGGCACTGCCACCGCTGGTGCACGAGCATCGAAGCACGGTGGCTGTGTCGCCGGTTCTGGGTGGTGGGGATGTGCCGGTGGCGGTGGAGGTGGTGAATGGGCTGATGATGGACCAGGTGTACGGGGTGGTGGGGCTAAGGGTGGTGGTGACGGGGAGGCTCAGGTGGAAGGCCGGCGCAATAAGGACGGGGCACTACGGGATTTATGTGAAATGTGATGTTTTGGTTGGATTGAAGAGAGGTTTTGTAGGTCAAGTTCCCTTGCTTGGTAATCCTGCATGTAAGGTTGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

214

Amino Acids

23.27

Weight (kDa)

9.75

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 87 - 183 4.2e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017560)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01410
fragaria_vesca FvH4_7g17770
malus_domestica MD07G1160200.v1.1
prunus_persica Prupe.2G198600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0361161
rosa_laevigata RLG00000027744
rosa_multiflora Rmu_co8099248.1_g000001 Rmu_sc0002511.1_g000001
rosa_roxburghii Rroxscaffold_4G00295350
rosa_rugosa Rorug01G0286600
rosa_samantha Rh6CG298900
rosa_wichuraiana Rw1G026330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 104, 334
Acc36I ACCTGC 2 cut(s) 104, 334
AccI GTMKAC 2 cut(s) 153, 198
AccII CGCG 1 cut(s) 279
AciI CCGC 9 cut(s) 72, 157, 237, 274, 277, 298, 341, 359, 428
AcoI YGGCCR 1 cut(s) 34
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 1 cut(s) 467
AfiI CCNNNNNNNGG 2 cut(s) 404, 611
AgsI TTSAA 1 cut(s) 580
AjnI CCWGG 2 cut(s) 327, 459
Alw21I GWGCWC 2 cut(s) 95, 369
Alw26I GTCTC 1 cut(s) 286
Alw44I GTGCAC 2 cut(s) 91, 365
AoxI GGCC 4 cut(s) 34, 73, 132, 516
ApaLI GTGCAC 2 cut(s) 91, 365
ApeKI GCWGC 1 cut(s) 191
AspLEI GCGC 1 cut(s) 524
AspS9I GGNCC 3 cut(s) 74, 133, 457
AsuC2I CCSGG 1 cut(s) 33
AsuHPI GGTGA 7 cut(s) 130, 169, 205, 241, 250, 451, 505
AvaII GGWCC 1 cut(s) 457
BaeGI GKGCMC 3 cut(s) 95, 369, 540
BauI CACGAG 1 cut(s) 368
Bbv12I GWGCWC 2 cut(s) 95, 369
BbvI GCAGC 1 cut(s) 178
BccI CCATC 4 cut(s) 113, 188, 293, 448
BceAI ACGGC 2 cut(s) 147, 179
BcgI CGANNNNNNTGC 2 cut(s) 356, 390
BciT130I CCWGG 2 cut(s) 329, 461
BcnI CCSGG 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 286
BfmI CTRYAG 2 cut(s) 79, 199
BfuAI ACCTGC 2 cut(s) 104, 334
BisI GCNGC 3 cut(s) 73, 192, 277
BlsI GCNGC 3 cut(s) 74, 193, 278
Bme1390I CCNGG 3 cut(s) 33, 329, 461
Bme18I GGWCC 1 cut(s) 457
BmgT120I GGNCC 3 cut(s) 74, 133, 457
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 3 cut(s) 33, 329, 461
BmrI ACTGGG 1 cut(s) 166
BmsI GCATC 1 cut(s) 382
BmuI ACTGGG 1 cut(s) 166
Bpu10I CCTNAGC 2 cut(s) 482, 506
BpuMI CCSGG 1 cut(s) 33
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 31, 57
BsaXI ACNNNNNCTCC 4 cut(s) 200, 205, 230, 235
Bsc4I CCNNNNNNNGG 2 cut(s) 404, 611
Bse118I RCCGGY 3 cut(s) 397, 421, 518
Bse1I ACTGG 1 cut(s) 172
BseBI CCWGG 2 cut(s) 329, 461
BseDI CCNNGG 2 cut(s) 31, 57
BseGI GGATG 1 cut(s) 421
BseLI CCNNNNNNNGG 2 cut(s) 404, 611
BseMII CTCAG 1 cut(s) 520
BseNI ACTGG 1 cut(s) 172
BseRI GAGGAG 2 cut(s) 104, 107
BseSI GKGCMC 3 cut(s) 95, 369, 540
BseXI GCAGC 1 cut(s) 178
BseYI CCCAGC 1 cut(s) 68
Bsh1236I CGCG 1 cut(s) 279
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 4 cut(s) 36, 75, 134, 518
BsiEI CGRYCG 1 cut(s) 298
BsiHKAI GWGCWC 2 cut(s) 95, 369
BsiSI CCGG 4 cut(s) 33, 398, 422, 519
BslI CCNNNNNNNGG 2 cut(s) 404, 611
BsmAI GTCTC 1 cut(s) 286
BsmBI CGTCTC 1 cut(s) 286
BsnI GGCC 4 cut(s) 36, 75, 134, 518
Bsp1286I GDGCHC 3 cut(s) 95, 369, 540
Bsp143I GATC 2 cut(s) 228, 333
BspACI CCGC 9 cut(s) 72, 157, 237, 274, 277, 298, 341, 359, 428
BspANI GGCC 4 cut(s) 36, 75, 134, 518
BspCNI CTCAG 1 cut(s) 519
BspFNI CGCG 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 76
BspMI ACCTGC 2 cut(s) 104, 334
BsrFI RCCGGY 3 cut(s) 397, 421, 518
BsrI ACTGG 1 cut(s) 172
BssAI RCCGGY 3 cut(s) 397, 421, 518
BssECI CCNNGG 2 cut(s) 31, 57
BssMI GATC 2 cut(s) 228, 333
BssNI GRCGYC 1 cut(s) 126
BssSI CACGAG 1 cut(s) 368
BssT1I CCWWGG 1 cut(s) 57
Bst2BI CACGAG 1 cut(s) 368
Bst2UI CCWGG 2 cut(s) 329, 461
Bst4CI ACNGT 1 cut(s) 385
Bst6I CTCTTC 1 cut(s) 575
BstACI GRCGYC 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 520
BstDEI CTNAG 3 cut(s) 18, 482, 506
BstF5I GGATG 1 cut(s) 421
BstFNI CGCG 1 cut(s) 279
BstHHI GCGC 1 cut(s) 524
BstKTI GATC 2 cut(s) 231, 336
BstMAI GTCTC 1 cut(s) 286
BstMBI GATC 2 cut(s) 228, 333
BstMCI CGRYCG 1 cut(s) 298
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 2 cut(s) 329, 461
BstNSI RCATGY 1 cut(s) 627
BstSCI CCNGG 3 cut(s) 31, 327, 459
BstSFI CTRYAG 2 cut(s) 79, 199
BstSLI GKGCMC 3 cut(s) 95, 369, 540
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 178
BsuRI GGCC 4 cut(s) 36, 75, 134, 518
BtsCI GGATG 1 cut(s) 421
BtsI GCAGTG 1 cut(s) 350
BtsIMutI CAGTG 1 cut(s) 350
BveI ACCTGC 2 cut(s) 104, 334
Cac8I GCNNGC 1 cut(s) 520
CfoI GCGC 1 cut(s) 524
Cfr10I RCCGGY 3 cut(s) 397, 421, 518
Cfr13I GGNCC 3 cut(s) 74, 133, 457
CseI GACGC 2 cut(s) 115, 268
CsiI ACCWGGT 1 cut(s) 459
Csp6I GTAC 1 cut(s) 466
CviAII CATG 2 cut(s) 241, 624
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 3 cut(s) 18, 482, 506
DpnI GATC 2 cut(s) 230, 335
DpnII GATC 2 cut(s) 228, 333
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 1 cut(s) 575
EarI CTCTTC 1 cut(s) 575
Eco130I CCWWGG 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 457
EcoRII CCWGG 2 cut(s) 327, 459
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
Esp3I CGTCTC 1 cut(s) 286
FaeI CATG 2 cut(s) 244, 627
FaiI YATR 6 cut(s) 242, 321, 552, 625, 638, 640
FatI CATG 2 cut(s) 240, 623
FblI GTMKAC 2 cut(s) 153, 198
Fnu4HI GCNGC 3 cut(s) 73, 192, 277
FokI GGATG 1 cut(s) 428
Fsp4HI GCNGC 3 cut(s) 73, 192, 277
GlaI GCGC 1 cut(s) 523
GluI GCNGC 3 cut(s) 73, 192, 277
GsaI CCCAGC 1 cut(s) 72
HaeIII GGCC 4 cut(s) 36, 75, 134, 518
HapII CCGG 4 cut(s) 33, 398, 422, 519
HgaI GACGC 2 cut(s) 115, 268
HhaI GCGC 1 cut(s) 524
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 2 cut(s) 244, 627
Hin6I GCGC 1 cut(s) 522
HinP1I GCGC 1 cut(s) 522
HpaII CCGG 4 cut(s) 33, 398, 422, 519
HphI GGTGA 7 cut(s) 130, 169, 205, 241, 250, 451, 505
Hpy166II GTNNAC 7 cut(s) 93, 154, 177, 199, 249, 367, 466
Hpy8I GTNNAC 7 cut(s) 93, 154, 177, 199, 249, 367, 466
Hpy99I CGWCG 2 cut(s) 188, 317
HpyAV CCTTC 2 cut(s) 319, 508
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 4 cut(s) 93, 244, 367, 623
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 3 cut(s) 18, 482, 506
HpySE526I ACGT 1 cut(s) 210
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 2 cut(s) 244, 627
HspAI GCGC 1 cut(s) 522
KroI GCCGGC 1 cut(s) 518
KroNI GCCGGC 1 cut(s) 520
Kzo9I GATC 2 cut(s) 228, 333
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 1 cut(s) 382
MabI ACCWGGT 1 cut(s) 459
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 4 cut(s) 127, 211, 256, 493
MalI GATC 2 cut(s) 230, 335
MboI GATC 2 cut(s) 228, 333
MboII GAAGA 3 cut(s) 35, 100, 592
MhlI GDGCHC 3 cut(s) 95, 369, 540
MmeI TCCRAC 1 cut(s) 553
MroNI GCCGGC 1 cut(s) 518
MslI CAYNNNNRTG 1 cut(s) 239
MspA1I CMGCKG 2 cut(s) 72, 361
MspI CCGG 4 cut(s) 33, 398, 422, 519
MspR9I CCNGG 3 cut(s) 33, 329, 461
MvaI CCWGG 2 cut(s) 329, 461
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 1 cut(s) 314
NaeI GCCGGC 1 cut(s) 520
NciI CCSGG 1 cut(s) 33
NdeII GATC 2 cut(s) 228, 333
NgoMIV GCCGGC 1 cut(s) 518
NlaIII CATG 2 cut(s) 244, 627
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 4 cut(s) 127, 211, 256, 493
NspI RCATGY 1 cut(s) 627
PaqCI CACCTGC 2 cut(s) 104, 334
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PdiI GCCGGC 1 cut(s) 520
PkrI GCNGC 3 cut(s) 74, 193, 278
Psp6I CCWGG 2 cut(s) 327, 459
PspFI CCCAGC 1 cut(s) 68
PspGI CCWGG 2 cut(s) 327, 459
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 3 cut(s) 74, 133, 457
PsrI GAACNNNNNNTAC 2 cut(s) 585, 617
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
RseI CAYNNNNRTG 1 cut(s) 239
SatI GCNGC 3 cut(s) 73, 192, 277
Sau3AI GATC 2 cut(s) 228, 333
Sau96I GGNCC 3 cut(s) 74, 133, 457
ScrFI CCNGG 3 cut(s) 33, 329, 461
SduI GDGCHC 3 cut(s) 95, 369, 540
SexAI ACCWGGT 1 cut(s) 459
SfaNI GCATC 1 cut(s) 382
SfcI CTRYAG 2 cut(s) 79, 199
SinI GGWCC 1 cut(s) 457
SmiMI CAYNNNNRTG 1 cut(s) 239
SsiI CCGC 9 cut(s) 72, 157, 237, 274, 277, 298, 341, 359, 428
StyD4I CCNGG 3 cut(s) 31, 327, 459
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 385
TaiI ACGT 1 cut(s) 213
TaqI TCGA 1 cut(s) 376
TauI GCSGC 2 cut(s) 75, 279
TscAI CASTG 1 cut(s) 357
TseFI GTSAC 4 cut(s) 127, 211, 256, 493
TseI GCWGC 1 cut(s) 191
Tsp45I GTSAC 4 cut(s) 127, 211, 256, 493
TspRI CASTG 1 cut(s) 357
VneI GTGCAC 2 cut(s) 91, 365
VpaK11BI GGWCC 1 cut(s) 457
XceI RCATGY 1 cut(s) 627
XmiI GTMKAC 2 cut(s) 153, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.