RLG00000027744

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0017560
Physical Location & Seq
Reverse (-)
14692694 .. 14693455
762 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027744

Sequence Viewer

Length: 762 bp
ATGGCAGAAGAGCAAGACCACCACCTTCCTCCAGAGTCACCAACAGAGCAAAACCACCACCCTCCTCCAGAGTCACCACCACCCCCACCACCACGACGACAACCACAAAACAACCACTTTCCACCACCCGAAATGATTCCGGACCGAAATATAAAAGAATGTAATATGCATCGCCAAACCAGTGAACCCTACAGAGCTCTCTGCACCTGCCTCACCATCCTCCTCCTCATCCTCGGCGCCACCGCCCTCGCGCTCTGGCTCGTTTACCGCCCCCACAAGCCGCAGTTCACCGTCGCCGCTGTCGCCATCTACTCCCTCAACACCACCTCCCCTCCCTCCCAAATCTCCACCACCATGCAGTTCACCATCGTCACGCGCAACCCCAACCGGAGGGTCTCCATCCGCTACGACCGTCTCCAGGCCTTTGTGGCCTATCGCAACCAAGCCATTACCCAGCAGGTGATGCTCCCCCCGCTGGCGCACGGGCGCCATAGTAGCGTGGCTGTGTCGCCCGTGCTTGGGGGAGTGGCGGTGCCGGTGTCGGCGGAGGTGTTGAACGGGCTAACGATTGACGAGGCGTACGGGGTGGTGAAGCTGAGGGTGGTGGTGGTGGGGAGGCTGAGGTGGAAGGTGACGGGGTTGGGGATAAGGACCGGGCATTATGGGATCTATGTCAAGTGTGATGTGCTGGTTGGGTTGAAGAAAGGGTTCGTGGGTCAAGTTCCATTGCTGGGTTCTCCTGATTGTAAAGTTGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

254

Amino Acids

27.98

Weight (kDa)

9.42

Isoelectric Point (pI)

61.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 126 - 227 2.2e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017560)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01410
fragaria_vesca FvH4_7g17770
malus_domestica MD07G1160200.v1.1
prunus_persica Prupe.2G198600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0361161
rosa_laevigata RLG00000027744
rosa_multiflora Rmu_co8099248.1_g000001 Rmu_sc0002511.1_g000001
rosa_roxburghii Rroxscaffold_4G00295350
rosa_rugosa Rorug01G0286600
rosa_samantha Rh6CG298900
rosa_wichuraiana Rw1G026330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 215, 448
Acc36I ACCTGC 2 cut(s) 215, 448
AccB1I GGYRCC 3 cut(s) 236, 486, 532
AccII CGCG 2 cut(s) 251, 376
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 8 cut(s) 243, 268, 281, 297, 403, 473, 530, 545
AclWI GGATC 1 cut(s) 674
AcyI GRCGYC 2 cut(s) 237, 487
AfaI GTAC 1 cut(s) 581
AfiI CCNNNNNNNGG 6 cut(s) 390, 418, 475, 518, 519, 731
AgsI TTSAA 2 cut(s) 556, 700
AjnI CCWGG 1 cut(s) 417
AluBI AGCT 2 cut(s) 197, 595
AluI AGCT 2 cut(s) 197, 595
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 2 cut(s) 400, 419
AlwI GGATC 1 cut(s) 674
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 2 cut(s) 420, 429
Asp700I GAANNNNTTC 2 cut(s) 135, 707
AspLEI GCGC 5 cut(s) 239, 253, 378, 481, 489
AspS9I GGNCC 2 cut(s) 142, 651
AsuC2I CCSGG 1 cut(s) 655
AsuHPI GGTGA 8 cut(s) 30, 66, 205, 280, 355, 472, 601, 643
AvaII GGWCC 2 cut(s) 142, 651
BanI GGYRCC 3 cut(s) 236, 486, 532
BanII GRGCYC 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 199
BbvCI CCTCAGC 2 cut(s) 596, 620
BccI CCATC 4 cut(s) 224, 314, 374, 407
BciT130I CCWGG 1 cut(s) 419
BcnI CCSGG 1 cut(s) 655
BcoDI GTCTC 2 cut(s) 400, 419
BfmI CTRYAG 1 cut(s) 190
BfoI RGCGCY 2 cut(s) 240, 490
BfuAI ACCTGC 2 cut(s) 215, 448
BglI GCCNNNNNGGC 1 cut(s) 428
BisI GCNGC 2 cut(s) 281, 297
BlsI GCNGC 2 cut(s) 282, 298
Bme1390I CCNGG 2 cut(s) 419, 655
Bme18I GGWCC 2 cut(s) 142, 651
BmgT120I GGNCC 2 cut(s) 142, 651
BmiI GGNNCC 3 cut(s) 238, 488, 534
BmrFI CCNGG 2 cut(s) 419, 655
BmsI GCATC 2 cut(s) 178, 453
BpmI CTGGAG 3 cut(s) 15, 51, 401
Bpu10I CCTNAGC 2 cut(s) 596, 620
BpuMI CCSGG 1 cut(s) 655
BsaHI GRCGYC 2 cut(s) 237, 487
BsaI GGTCTC 1 cut(s) 400
BsaJI CCNNGG 1 cut(s) 232
BsaWI WCCGGW 2 cut(s) 139, 387
BsaXI ACNNNNNCTCC 6 cut(s) 311, 316, 341, 346, 516, 546
Bsc4I CCNNNNNNNGG 6 cut(s) 390, 418, 475, 518, 519, 731
Bse118I RCCGGY 1 cut(s) 535
Bse1I ACTGG 1 cut(s) 180
Bse3DI GCAATG 1 cut(s) 725
BseAI TCCGGA 1 cut(s) 139
BseBI CCWGG 1 cut(s) 419
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 3 cut(s) 216, 228, 399
BseLI CCNNNNNNNGG 6 cut(s) 390, 418, 475, 518, 519, 731
BseMI GCAATG 1 cut(s) 725
BseMII CTCAG 2 cut(s) 587, 611
BseNI ACTGG 1 cut(s) 180
BseRI GAGGAG 3 cut(s) 54, 212, 215
BseYI CCCAGC 2 cut(s) 453, 730
BsgI GTGCAG 1 cut(s) 187
Bsh1236I CGCG 2 cut(s) 251, 376
Bsh1285I CGRYCG 1 cut(s) 412
BshFI GGCC 2 cut(s) 422, 431
BshNI GGYRCC 3 cut(s) 236, 486, 532
BsiEI CGRYCG 1 cut(s) 412
BsiHKAI GWGCWC 1 cut(s) 199
BsiSI CCGG 4 cut(s) 140, 388, 536, 654
BsiWI CGTACG 1 cut(s) 579
BslI CCNNNNNNNGG 6 cut(s) 390, 418, 475, 518, 519, 731
BsmAI GTCTC 2 cut(s) 400, 419
BsmBI CGTCTC 1 cut(s) 419
BsnI GGCC 2 cut(s) 422, 431
Bso31I GGTCTC 1 cut(s) 400
Bsp1286I GDGCHC 1 cut(s) 199
Bsp13I TCCGGA 1 cut(s) 139
Bsp143I GATC 1 cut(s) 666
BspACI CCGC 8 cut(s) 243, 268, 281, 297, 403, 473, 530, 545
BspANI GGCC 2 cut(s) 422, 431
BspCNI CTCAG 2 cut(s) 588, 612
BspEI TCCGGA 1 cut(s) 139
BspFNI CGCG 2 cut(s) 251, 376
BspLI GGNNCC 3 cut(s) 238, 488, 534
BspMI ACCTGC 2 cut(s) 215, 448
BspPI GGATC 1 cut(s) 674
BspQI GCTCTTC 1 cut(s) 3
BspT107I GGYRCC 3 cut(s) 236, 486, 532
BspTNI GGTCTC 1 cut(s) 400
BsrDI GCAATG 1 cut(s) 725
BsrFI RCCGGY 1 cut(s) 535
BsrI ACTGG 1 cut(s) 180
BssAI RCCGGY 1 cut(s) 535
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 1 cut(s) 666
BssNI GRCGYC 2 cut(s) 237, 487
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 2 cut(s) 292, 413
Bst6I CTCTTC 1 cut(s) 3
BstACI GRCGYC 2 cut(s) 237, 487
BstAPI GCANNNNNTGC 1 cut(s) 463
BstC8I GCNNGC 1 cut(s) 477
BstDEI CTNAG 2 cut(s) 596, 620
BstF5I GGATG 3 cut(s) 216, 228, 399
BstFNI CGCG 2 cut(s) 251, 376
BstH2I RGCGCY 2 cut(s) 240, 490
BstHHI GCGC 5 cut(s) 239, 253, 378, 481, 489
BstKTI GATC 1 cut(s) 669
BstMAI GTCTC 2 cut(s) 400, 419
BstMBI GATC 1 cut(s) 666
BstMCI CGRYCG 1 cut(s) 412
BstMWI GCNNNNNNNGC 5 cut(s) 302, 428, 463, 472, 495
BstNI CCWGG 1 cut(s) 419
BstSCI CCNGG 2 cut(s) 417, 653
BstSFI CTRYAG 1 cut(s) 190
BstUI CGCG 2 cut(s) 251, 376
BstX2I RGATCY 1 cut(s) 666
BstYI RGATCY 1 cut(s) 666
BsuRI GGCC 2 cut(s) 422, 431
BtgZI GCGATG 1 cut(s) 155
BtsCI GGATG 3 cut(s) 216, 228, 399
BtsIMutI CAGTG 1 cut(s) 187
BveI ACCTGC 2 cut(s) 215, 448
Cac8I GCNNGC 1 cut(s) 477
CfoI GCGC 5 cut(s) 239, 253, 378, 481, 489
Cfr10I RCCGGY 1 cut(s) 535
Cfr13I GGNCC 2 cut(s) 142, 651
CpoI CGGWCCG 1 cut(s) 142
Csp6I GTAC 1 cut(s) 580
CspI CGGWCCG 1 cut(s) 142
CviAII CATG 1 cut(s) 355
CviQI GTAC 1 cut(s) 580
DdeI CTNAG 2 cut(s) 596, 620
DinI GGCGCC 2 cut(s) 238, 488
DpnI GATC 1 cut(s) 668
DpnII GATC 1 cut(s) 666
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
EciI GGCGGA 1 cut(s) 560
Ecl136II GAGCTC 1 cut(s) 197
Eco147I AGGCCT 1 cut(s) 422
Eco24I GRGCYC 1 cut(s) 199
Eco31I GGTCTC 1 cut(s) 400
Eco47I GGWCC 2 cut(s) 142, 651
Eco53kI GAGCTC 1 cut(s) 197
EcoICRI GAGCTC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 417
EcoT22I ATGCAT 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 199
EgeI GGCGCC 2 cut(s) 238, 488
EheI GGCGCC 2 cut(s) 238, 488
Esp3I CGTCTC 1 cut(s) 419
FaeI CATG 1 cut(s) 358
FaiI YATR 8 cut(s) 152, 167, 356, 492, 663, 672, 758, 760
FatI CATG 1 cut(s) 354
FauI CCCGC 1 cut(s) 480
Fnu4HI GCNGC 2 cut(s) 281, 297
FokI GGATG 3 cut(s) 203, 215, 386
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 2 cut(s) 281, 297
GlaI GCGC 5 cut(s) 238, 252, 377, 480, 488
GluI GCNGC 2 cut(s) 281, 297
GsaI CCCAGC 2 cut(s) 457, 734
GsuI CTGGAG 3 cut(s) 15, 51, 401
HaeII RGCGCY 2 cut(s) 240, 490
HaeIII GGCC 2 cut(s) 422, 431
HapII CCGG 4 cut(s) 140, 388, 536, 654
HhaI GCGC 5 cut(s) 239, 253, 378, 481, 489
Hin1I GRCGYC 2 cut(s) 237, 487
Hin1II CATG 1 cut(s) 358
Hin6I GCGC 5 cut(s) 237, 251, 376, 479, 487
HinP1I GCGC 5 cut(s) 237, 251, 376, 479, 487
HinfI GANTC 3 cut(s) 35, 71, 136
HpaII CCGG 4 cut(s) 140, 388, 536, 654
HphI GGTGA 8 cut(s) 30, 66, 205, 280, 355, 472, 601, 643
Hpy166II GTNNAC 4 cut(s) 185, 265, 288, 363
Hpy188III TCNNGA 4 cut(s) 32, 68, 140, 740
Hpy8I GTNNAC 4 cut(s) 185, 265, 288, 363
Hpy99I CGWCG 2 cut(s) 99, 296
HpyAV CCTTC 2 cut(s) 35, 622
HpyCH4III ACNGT 2 cut(s) 292, 413
HpyCH4V TGCA 3 cut(s) 169, 204, 358
HpyF10VI GCNNNNNNNGC 5 cut(s) 302, 428, 463, 472, 495
HpyF3I CTNAG 2 cut(s) 596, 620
Hsp92I GRCGYC 2 cut(s) 237, 487
Hsp92II CATG 1 cut(s) 358
HspAI GCGC 5 cut(s) 237, 251, 376, 479, 487
KasI GGCGCC 2 cut(s) 236, 486
Kpn2I TCCGGA 1 cut(s) 139
Kzo9I GATC 1 cut(s) 666
LguI GCTCTTC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 471
LweI GCATC 2 cut(s) 178, 453
MaeIII GTNAC 4 cut(s) 36, 72, 370, 631
MalI GATC 1 cut(s) 668
MboI GATC 1 cut(s) 666
MboII GAAGA 2 cut(s) 20, 712
MflI RGATCY 1 cut(s) 666
MhlI GDGCHC 1 cut(s) 199
Mly113I GGCGCC 2 cut(s) 237, 487
MlyI GAGTC 2 cut(s) 44, 80
Mph1103I ATGCAT 1 cut(s) 171
MroI TCCGGA 1 cut(s) 139
MroXI GAANNNNTTC 2 cut(s) 135, 707
MslI CAYNNNNRTG 1 cut(s) 353
MspA1I CMGCKG 2 cut(s) 299, 475
MspI CCGG 4 cut(s) 140, 388, 536, 654
MspR9I CCNGG 2 cut(s) 419, 655
MvaI CCWGG 1 cut(s) 419
MvnI CGCG 2 cut(s) 251, 376
MwoI GCNNNNNNNGC 5 cut(s) 302, 428, 463, 472, 495
NarI GGCGCC 2 cut(s) 237, 487
NciI CCSGG 1 cut(s) 655
NdeII GATC 1 cut(s) 666
NlaIII CATG 1 cut(s) 358
NlaIV GGNNCC 3 cut(s) 238, 488, 534
NmeAIII GCCGAG 1 cut(s) 213
NmuCI GTSAC 4 cut(s) 36, 72, 370, 631
NsiI ATGCAT 1 cut(s) 171
PaqCI CACCTGC 2 cut(s) 215, 448
PceI AGGCCT 1 cut(s) 422
PciSI GCTCTTC 1 cut(s) 3
PdmI GAANNNNTTC 2 cut(s) 135, 707
PfeI GAWTC 1 cut(s) 136
Pfl23II CGTACG 1 cut(s) 579
PkrI GCNGC 2 cut(s) 282, 298
PleI GAGTC 2 cut(s) 43, 79
PluTI GGCGCC 2 cut(s) 240, 490
PpsI GAGTC 2 cut(s) 43, 79
Psp124BI GAGCTC 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 417
PspFI CCCAGC 2 cut(s) 453, 730
PspGI CCWGG 1 cut(s) 417
PspLI CGTACG 1 cut(s) 579
PspN4I GGNNCC 3 cut(s) 238, 488, 534
PspPI GGNCC 2 cut(s) 142, 651
PsuI RGATCY 1 cut(s) 666
RsaI GTAC 1 cut(s) 581
RsaNI GTAC 1 cut(s) 580
RseI CAYNNNNRTG 1 cut(s) 353
Rsr2I CGGWCCG 1 cut(s) 142
RsrII CGGWCCG 1 cut(s) 142
SacI GAGCTC 1 cut(s) 199
SapI GCTCTTC 1 cut(s) 3
SatI GCNGC 2 cut(s) 281, 297
Sau3AI GATC 1 cut(s) 666
Sau96I GGNCC 2 cut(s) 142, 651
SchI GAGTC 2 cut(s) 44, 80
ScrFI CCNGG 2 cut(s) 419, 655
SduI GDGCHC 1 cut(s) 199
SetI ASST 9 cut(s) 27, 199, 209, 329, 462, 552, 597, 626, 633
SfaNI GCATC 2 cut(s) 178, 453
SfcI CTRYAG 1 cut(s) 190
SfiI GGCCNNNNNGGCC 1 cut(s) 428
SfoI GGCGCC 2 cut(s) 238, 488
SinI GGWCC 2 cut(s) 142, 651
SmiMI CAYNNNNRTG 1 cut(s) 353
SseBI AGGCCT 1 cut(s) 422
SsiI CCGC 8 cut(s) 243, 268, 281, 297, 403, 473, 530, 545
SspDI GGCGCC 2 cut(s) 236, 486
SstI GAGCTC 1 cut(s) 199
StuI AGGCCT 1 cut(s) 422
StyD4I CCNGG 2 cut(s) 417, 653
TaaI ACNGT 2 cut(s) 292, 413
TaqII GACCGA 1 cut(s) 159
TauI GCSGC 2 cut(s) 283, 299
TfiI GAWTC 1 cut(s) 136
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 4 cut(s) 36, 72, 370, 631
Tsp45I GTSAC 4 cut(s) 36, 72, 370, 631
TspRI CASTG 1 cut(s) 187
VpaK11BI GGWCC 2 cut(s) 142, 651
XmnI GAANNNNTTC 2 cut(s) 135, 707
Zsp2I ATGCAT 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.