AT4G02150

Importin subunit

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
950546 .. 953690
3145 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G02150.1

Sequence Viewer

Length: 1596 bp
ATGTCTCTCAGACCTAGCGCGAAGACGGAGGTGCGACGGAATCGGTACAAAGTAGCGGTCGATGCGGAGGAAGGACGGCGGAGGCGAGAGGATAACTTGGTTGAGATCAGGAAGAACAAGAGAGAGGAAAATTTGCAGAAGAAGAGATTTACGTCTTCTATGGCTTTTGGCTCAGCAACGGGACAAACGGAACAGGATCTTTCTTCAGCGAACCAATTAAAAGATAATCTACCTGCTATGGTTGCTGGAATCTGGTCAGAGGATAGCAATTCACAATTGGAGGCAACAAATCTCTTGCGGAAACTGCTTTCTATTGAACAAAATCCTCCTATCAATGAAGTTGTACAATCTGGTGTTGTTCCTCGTGTTGTGAAGTTTCTTTCCAGGGATGACTTCCCCAAACTTCAGTTTGAGGCAGCTTGGGCGCTCACCAACATTGCTTCAGGGACATCAGAGAACACAAATGTCATCATTGAAAGTGGAGCTGTCCCGATATTCATCCAACTTCTCAGCTCTGCTAGTGAAGATGTCCGCGAACAGGCTGTTTGGGCATTGGGAAATGTTGCTGGAGACTCACCAAAATGCCGGGATTTAGTCCTAAGTTACGGTGCCATGACACCTCTTCTGTCTCAATTCAATGAGAATACAAAGCTTTCAATGCTGAGAAATGCTACATGGACATTATCAAACTTCTGCAGAGGGAAGCCCCCACCCGCATTTGAACAGACACAACCAGCTTTACCAGTTCTTGAGCGCCTTGTGCAATCAATGGATGAAGAAGTTCTCACAGATGCATGCTGGGCTCTGTCATACCTCTCGGATAATTCAAACGACAAAATACAAGCAGTCATTGAAGCAGGAGTTGTTCCTCGCCTCATCCAGCTCTTAGGTCATTCGTCGCCATCAGTGCTGATTCCTGCTCTTCGTACCATTGGAAATATTGTAACCGGGGATGATCTACAGACTCAGATGGTTCTCGACCAGCAAGCGCTTCCTTGTCTTTTGAACCTTCTAAAAAACAATTACAAGAAGAGTATCAAGAAGGAAGCTTGCTGGACTATCTCCAACATTACAGCTGGAAATGCAGATCAGATACAAGCAGTGATTGATGCAGGTATAATCCAGTCTCTTGTTTGGGTGCTTCAAAGTGCAGAGTTCGAAGTAAAAAAAGAAGCTGCTTGGGGAATATCAAATGCTACTTCTGGTGGCACTCATGATCAAATCAAGTTTATGGTGAGCCAAGGCTGTATCAAACCTCTATGCGATCTCCTTACTTGCCCAGATCTGAAAGTTGTAACGGTTTGCTTAGAAGCACTAGAGAACATTCTCGTGGTTGGAGAAGCAGAGAAGAACTTAGGTCACACAGGAGAAGACAACCTCTACGCTCAAATGATTGACGAAGCAGAAGGGTTAGAGAAGATTGAGAATCTTCAGAGTCACGACAACAATGATATCTACGACAAAGCCGTGAAGATCCTCGAAACATTTTGGACTGAAGACAATGAAGAAGAAGGCAACGACGAGAATCATGCTCCACAATCTGGTTTCCAGTTCGGAAGCACCAATGTTCCTCCTGGTCAATTCAACTTTATTTGA

Protein Analysis

531

Amino Acids

58.62

Weight (kDa)

4.8

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBB PF01749 12 - 96 7.4e-24 Importin beta binding domain
ARM_PUB PF25598 67 - 184 8.9e-06 Plant U-box protein ARM repeat region
ARM_ARMC5 PF24768 86 - 233 7.6e-07 ARMC5
Arm PF00514 108 - 148 3.1e-10 Armadillo/beta-catenin-like repeat
HEAT_2 PF13646 121 - 191 1.2e-06 HEAT repeats
HEAT_EZ PF13513 133 - 188 3.9e-08 HEAT-like repeat
Arm PF00514 151 - 189 9.8e-13 Armadillo/beta-catenin-like repeat
Arm PF00514 192 - 233 6.8e-07 Armadillo/beta-catenin-like repeat
Arm PF00514 245 - 274 1.8e-07 Armadillo/beta-catenin-like repeat
ARM_ARMC5 PF24768 255 - 390 1.7e-07 ARMC5
Arm PF00514 276 - 315 7e-11 Armadillo/beta-catenin-like repeat
ARM_ARMC5 PF24768 311 - 493 7.5e-10 ARMC5
Arm PF00514 319 - 359 5.8e-10 Armadillo/beta-catenin-like repeat
Arm PF00514 361 - 400 2.1e-10 Armadillo/beta-catenin-like repeat
Arm PF00514 405 - 443 1.1e-08 Armadillo/beta-catenin-like repeat
Arm_3 PF16186 459 - 513 1.5e-21 Atypical Arm repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 241, 1103
AccB1I GGYRCC 1 cut(s) 608
AccB7I CCANNNNNTGG 1 cut(s) 1541
AccII CGCG 2 cut(s) 20, 534
AciI CCGC 6 cut(s) 56, 65, 79, 298, 532, 714
AclWI GGATC 2 cut(s) 204, 1468
AcsI RAATTY 1 cut(s) 130
AcuI CTGAAG 5 cut(s) 189, 389, 426, 1415, 1515
AfaI GTAC 3 cut(s) 47, 345, 928
AfeI AGCGCT 1 cut(s) 990
AfiI CCNNNNNNNGG 2 cut(s) 538, 1541
AjnI CCWGG 2 cut(s) 383, 1573
AluBI AGCT 9 cut(s) 419, 485, 513, 652, 737, 883, 1049, 1076, 1175
AluI AGCT 9 cut(s) 419, 485, 513, 652, 737, 883, 1049, 1076, 1175
Alw26I GTCTC 4 cut(s) 9, 564, 633, 1131
AlwI GGATC 2 cut(s) 204, 1468
Aor51HI AGCGCT 1 cut(s) 990
ApeKI GCWGC 2 cut(s) 416, 1175
ApoI RAATTY 1 cut(s) 130
ArsI GACNNNNNNTTYG 2 cut(s) 42, 74
Asp700I GAANNNNTTC 1 cut(s) 780
AspLEI GCGC 4 cut(s) 20, 427, 756, 991
AsuC2I CCSGG 2 cut(s) 587, 949
AsuHPI GGTGA 3 cut(s) 421, 567, 1246
AsuII TTCGAA 1 cut(s) 1158
BanI GGYRCC 1 cut(s) 608
BanII GRGCYC 1 cut(s) 805
BauI CACGAG 2 cut(s) 363, 1328
BbsI GAAGAC 4 cut(s) 29, 147, 1377, 1503
BbvI GCAGC 2 cut(s) 428, 1162
BccI CCATC 2 cut(s) 910, 964
BceAI ACGGC 2 cut(s) 92, 1451
BcgI CGANNNNNNTGC 2 cut(s) 1511, 1545
BciT130I CCWGG 2 cut(s) 385, 1575
BclI TGATCA 1 cut(s) 1216
BcnI CCSGG 2 cut(s) 587, 949
BcoDI GTCTC 4 cut(s) 9, 564, 633, 1131
BfaI CTAG 3 cut(s) 15, 519, 1316
BfmI CTRYAG 2 cut(s) 694, 959
BfoI RGCGCY 3 cut(s) 428, 757, 992
BfuAI ACCTGC 2 cut(s) 241, 1103
BglII AGATCT 1 cut(s) 1282
BisI GCNGC 2 cut(s) 417, 1176
BlpI GCTNAGC 1 cut(s) 172
BlsI GCNGC 2 cut(s) 418, 1177
Bme1390I CCNGG 4 cut(s) 385, 587, 949, 1575
BmiI GGNNCC 1 cut(s) 610
BmrFI CCNGG 4 cut(s) 385, 587, 949, 1575
BmsI GCATC 3 cut(s) 52, 781, 1099
BpiI GAAGAC 4 cut(s) 29, 147, 1377, 1503
BpmI CTGGAG 1 cut(s) 588
Bpu1102I GCTNAGC 1 cut(s) 172
Bpu14I TTCGAA 1 cut(s) 1158
BpuEI CTTGAG 1 cut(s) 770
BpuMI CCSGG 2 cut(s) 587, 949
BsaBI GATNNNNATC 1 cut(s) 497
BsaJI CCNNGG 3 cut(s) 384, 948, 1240
Bsc4I CCNNNNNNNGG 2 cut(s) 538, 1541
Bse1I ACTGG 3 cut(s) 743, 1123, 1549
Bse3DI GCAATG 1 cut(s) 435
Bse8I GATNNNNATC 1 cut(s) 497
BseBI CCWGG 2 cut(s) 385, 1575
BseDI CCNNGG 3 cut(s) 384, 948, 1240
BseGI GGATG 5 cut(s) 394, 498, 778, 876, 958
BseJI GATNNNNATC 1 cut(s) 497
BseLI CCNNNNNNNGG 2 cut(s) 538, 1541
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 5 cut(s) 22, 186, 523, 653, 980
BseNI ACTGG 3 cut(s) 743, 1123, 1549
BseXI GCAGC 2 cut(s) 428, 1162
BseYI CCCAGC 1 cut(s) 798
BsgI GTGCAG 1 cut(s) 1170
Bsh1236I CGCG 2 cut(s) 20, 534
Bsh1285I CGRYCG 1 cut(s) 60
BshNI GGYRCC 1 cut(s) 608
BsiEI CGRYCG 1 cut(s) 60
BsiSI CCGG 2 cut(s) 586, 948
BslFI GGGAC 3 cut(s) 195, 460, 473
BslI CCNNNNNNNGG 2 cut(s) 538, 1541
BsmAI GTCTC 4 cut(s) 9, 564, 633, 1131
BsmFI GGGAC 3 cut(s) 195, 460, 473
Bsp119I TTCGAA 1 cut(s) 1158
Bsp1286I GDGCHC 1 cut(s) 805
Bsp1407I TGTACA 1 cut(s) 343
Bsp143I GATC 8 cut(s) 105, 196, 955, 1087, 1216, 1264, 1282, 1473
Bsp1720I GCTNAGC 1 cut(s) 172
BspACI CCGC 6 cut(s) 56, 65, 79, 298, 532, 714
BspCNI CTCAG 5 cut(s) 21, 185, 522, 654, 979
BspFNI CGCG 2 cut(s) 20, 534
BspHI TCATGA 1 cut(s) 1213
BspLI GGNNCC 1 cut(s) 610
BspMAI CTGCAG 1 cut(s) 698
BspMI ACCTGC 2 cut(s) 241, 1103
BspPI GGATC 2 cut(s) 204, 1468
BspQI GCTCTTC 1 cut(s) 927
BspT104I TTCGAA 1 cut(s) 1158
BspT107I GGYRCC 1 cut(s) 608
BsrDI GCAATG 1 cut(s) 435
BsrGI TGTACA 1 cut(s) 343
BsrI ACTGG 3 cut(s) 743, 1123, 1549
BssECI CCNNGG 3 cut(s) 384, 948, 1240
BssMI GATC 8 cut(s) 105, 196, 955, 1087, 1216, 1264, 1282, 1473
BssSI CACGAG 2 cut(s) 363, 1328
BssT1I CCWWGG 1 cut(s) 1240
Bst2BI CACGAG 2 cut(s) 363, 1328
Bst2UI CCWGG 2 cut(s) 385, 1575
Bst4CI ACNGT 2 cut(s) 608, 1300
Bst6I CTCTTC 4 cut(s) 137, 627, 927, 1025
BstAUI TGTACA 1 cut(s) 343
BstBI TTCGAA 1 cut(s) 1158
BstC8I GCNNGC 3 cut(s) 796, 987, 1051
BstDEI CTNAG 9 cut(s) 8, 172, 509, 599, 662, 886, 966, 1306, 1354
BstF5I GGATG 5 cut(s) 394, 498, 778, 876, 958
BstFNI CGCG 2 cut(s) 20, 534
BstH2I RGCGCY 3 cut(s) 428, 757, 992
BstHHI GCGC 4 cut(s) 20, 427, 756, 991
BstKTI GATC 8 cut(s) 108, 199, 958, 1090, 1219, 1267, 1285, 1476
BstMAI GTCTC 4 cut(s) 9, 564, 633, 1131
BstMBI GATC 8 cut(s) 105, 196, 955, 1087, 1216, 1264, 1282, 1473
BstMCI CGRYCG 1 cut(s) 60
BstNI CCWGG 2 cut(s) 385, 1575
BstNSI RCATGY 1 cut(s) 798
BstSCI CCNGG 4 cut(s) 383, 585, 947, 1573
BstSFI CTRYAG 2 cut(s) 694, 959
BstUI CGCG 2 cut(s) 20, 534
BstV1I GCAGC 2 cut(s) 428, 1162
BstV2I GAAGAC 4 cut(s) 29, 147, 1377, 1503
BstX2I RGATCY 3 cut(s) 196, 1282, 1473
BstYI RGATCY 3 cut(s) 196, 1282, 1473
BtsCI GGATG 5 cut(s) 394, 498, 778, 876, 958
BtsI GCAGTG 1 cut(s) 1107
BtsIMutI CAGTG 2 cut(s) 912, 1107
BveI ACCTGC 2 cut(s) 241, 1103
Cac8I GCNNGC 3 cut(s) 796, 987, 1051
CciI TCATGA 1 cut(s) 1213
CfoI GCGC 4 cut(s) 20, 427, 756, 991
Csp6I GTAC 3 cut(s) 46, 344, 927
CviAII CATG 5 cut(s) 613, 675, 795, 1214, 1529
CviQI GTAC 3 cut(s) 46, 344, 927
DdeI CTNAG 9 cut(s) 8, 172, 509, 599, 662, 886, 966, 1306, 1354
DpnI GATC 8 cut(s) 107, 198, 957, 1089, 1218, 1266, 1284, 1475
DpnII GATC 8 cut(s) 105, 196, 955, 1087, 1216, 1264, 1282, 1473
Eam1104I CTCTTC 4 cut(s) 137, 627, 927, 1025
EarI CTCTTC 4 cut(s) 137, 627, 927, 1025
EciI GGCGGA 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 1240
Eco24I GRGCYC 1 cut(s) 805
Eco32I GATATC 1 cut(s) 1453
Eco47III AGCGCT 1 cut(s) 990
Eco57I CTGAAG 5 cut(s) 189, 389, 426, 1415, 1515
EcoRII CCWGG 2 cut(s) 383, 1573
EcoRV GATATC 1 cut(s) 1453
EcoT14I CCWWGG 1 cut(s) 1240
EcoT22I ATGCAT 1 cut(s) 796
EcoT38I GRGCYC 1 cut(s) 805
ErhI CCWWGG 1 cut(s) 1240
FaeI CATG 5 cut(s) 616, 678, 798, 1217, 1532
FaqI GGGAC 3 cut(s) 195, 460, 473
FatI CATG 5 cut(s) 612, 674, 794, 1213, 1528
FauI CCCGC 1 cut(s) 721
FbaI TGATCA 1 cut(s) 1216
Fnu4HI GCNGC 2 cut(s) 417, 1176
FokI GGATG 5 cut(s) 401, 485, 785, 863, 965
FriOI GRGCYC 1 cut(s) 805
Fsp4HI GCNGC 2 cut(s) 417, 1176
FspBI CTAG 3 cut(s) 15, 519, 1316
GlaI GCGC 4 cut(s) 19, 426, 755, 990
GluI GCNGC 2 cut(s) 417, 1176
GsaI CCCAGC 1 cut(s) 802
GsuI CTGGAG 1 cut(s) 588
HaeII RGCGCY 3 cut(s) 428, 757, 992
HapII CCGG 2 cut(s) 586, 948
HhaI GCGC 4 cut(s) 20, 427, 756, 991
Hin1II CATG 5 cut(s) 616, 678, 798, 1217, 1532
Hin6I GCGC 4 cut(s) 18, 425, 754, 989
HinP1I GCGC 4 cut(s) 18, 425, 754, 989
HindIII AAGCTT 2 cut(s) 650, 1047
HinfI GANTC 8 cut(s) 40, 249, 572, 913, 964, 1426, 1435, 1525
HpaII CCGG 2 cut(s) 586, 948
HphI GGTGA 3 cut(s) 421, 567, 1246
Hpy188I TCNGA 9 cut(s) 11, 259, 454, 820, 969, 1092, 1287, 1434, 1556
Hpy188III TCNNGA 7 cut(s) 109, 490, 749, 977, 1039, 1214, 1439
Hpy99I CGWCG 3 cut(s) 39, 901, 1523
HpyAV CCTTC 5 cut(s) 65, 1019, 1036, 1400, 1505
HpyCH4III ACNGT 2 cut(s) 608, 1300
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 7 cut(s) 136, 696, 763, 794, 1085, 1112, 1151
HpyF3I CTNAG 9 cut(s) 8, 172, 509, 599, 662, 886, 966, 1306, 1354
HpySE526I ACGT 1 cut(s) 152
Hsp92II CATG 5 cut(s) 616, 678, 798, 1217, 1532
HspAI GCGC 4 cut(s) 18, 425, 754, 989
Ksp22I TGATCA 1 cut(s) 1216
Kzo9I GATC 8 cut(s) 105, 196, 955, 1087, 1216, 1264, 1282, 1473
LguI GCTCTTC 1 cut(s) 927
LmnI GCTCC 2 cut(s) 482, 1537
Lsp1109I GCAGC 2 cut(s) 428, 1162
LweI GCATC 3 cut(s) 52, 781, 1099
MaeI CTAG 3 cut(s) 15, 519, 1316
MaeII ACGT 1 cut(s) 152
MaeIII GTNAC 5 cut(s) 602, 943, 1294, 1358, 1436
MalI GATC 8 cut(s) 107, 198, 957, 1089, 1218, 1266, 1284, 1475
MboI GATC 8 cut(s) 105, 196, 955, 1087, 1216, 1264, 1282, 1473
MfeI CAATTG 1 cut(s) 275
MflI RGATCY 3 cut(s) 196, 1282, 1473
MhlI GDGCHC 1 cut(s) 805
MluCI AATT 8 cut(s) 130, 215, 268, 275, 632, 823, 1021, 1580
MlyI GAGTC 3 cut(s) 566, 958, 1444
MmeI TCCRAC 3 cut(s) 526, 1089, 1315
Mph1103I ATGCAT 1 cut(s) 796
MroXI GAANNNNTTC 1 cut(s) 780
MseI TTAA 1 cut(s) 218
MslI CAYNNNNRTG 2 cut(s) 580, 1328
MspA1I CMGCKG 1 cut(s) 1076
MspI CCGG 2 cut(s) 586, 948
MspR9I CCNGG 4 cut(s) 385, 587, 949, 1575
MunI CAATTG 1 cut(s) 275
MvaI CCWGG 2 cut(s) 385, 1575
MvnI CGCG 2 cut(s) 20, 534
NciI CCSGG 2 cut(s) 587, 949
NdeII GATC 8 cut(s) 105, 196, 955, 1087, 1216, 1264, 1282, 1473
NlaIII CATG 5 cut(s) 616, 678, 798, 1217, 1532
NlaIV GGNNCC 1 cut(s) 610
NmuCI GTSAC 2 cut(s) 1358, 1436
NsiI ATGCAT 1 cut(s) 796
NspI RCATGY 1 cut(s) 798
NspV TTCGAA 1 cut(s) 1158
PaeI GCATGC 1 cut(s) 798
PagI TCATGA 1 cut(s) 1213
PciSI GCTCTTC 1 cut(s) 927
PcsI WCGNNNNNNNCGW 2 cut(s) 82, 1464
PdmI GAANNNNTTC 1 cut(s) 780
PfeI GAWTC 5 cut(s) 40, 249, 913, 1426, 1525
PflMI CCANNNNNTGG 1 cut(s) 1541
PkrI GCNGC 2 cut(s) 418, 1177
PleI GAGTC 3 cut(s) 566, 958, 1443
PpsI GAGTC 3 cut(s) 566, 958, 1443
Psp6I CCWGG 2 cut(s) 383, 1573
PspFI CCCAGC 1 cut(s) 798
PspGI CCWGG 2 cut(s) 383, 1573
PspN4I GGNNCC 1 cut(s) 610
PstI CTGCAG 1 cut(s) 698
PsuI RGATCY 3 cut(s) 196, 1282, 1473
PvuII CAGCTG 1 cut(s) 1076
RsaI GTAC 3 cut(s) 47, 345, 928
RsaNI GTAC 3 cut(s) 46, 344, 927
RseI CAYNNNNRTG 2 cut(s) 580, 1328
SapI GCTCTTC 1 cut(s) 927
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 2 cut(s) 417, 1176
Sau3AI GATC 8 cut(s) 105, 196, 955, 1087, 1216, 1264, 1282, 1473
SchI GAGTC 3 cut(s) 566, 958, 1444
ScrFI CCNGG 4 cut(s) 385, 587, 949, 1575
SduI GDGCHC 1 cut(s) 805
SfaNI GCATC 3 cut(s) 52, 781, 1099
SfcI CTRYAG 2 cut(s) 694, 959
SfuI TTCGAA 1 cut(s) 1158
SmiMI CAYNNNNRTG 2 cut(s) 580, 1328
SmlI CTYRAG 1 cut(s) 749
SmoI CTYRAG 1 cut(s) 749
SphI GCATGC 1 cut(s) 798
Sse9I AATT 8 cut(s) 130, 215, 268, 275, 632, 823, 1021, 1580
SsiI CCGC 6 cut(s) 56, 65, 79, 298, 532, 714
SspI AATATT 1 cut(s) 940
SspMI CTAG 3 cut(s) 15, 519, 1316
StyD4I CCNGG 4 cut(s) 383, 585, 947, 1573
StyI CCWWGG 1 cut(s) 1240
TaaI ACNGT 2 cut(s) 608, 1300
TaiI ACGT 1 cut(s) 155
TaqI TCGA 4 cut(s) 60, 978, 1158, 1479
TasI AATT 8 cut(s) 130, 215, 268, 275, 632, 823, 1021, 1580
TatI WGTACW 1 cut(s) 343
TfiI GAWTC 5 cut(s) 40, 249, 913, 1426, 1525
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TscAI CASTG 2 cut(s) 912, 1107
TseFI GTSAC 2 cut(s) 1358, 1436
TseI GCWGC 2 cut(s) 416, 1175
Tsp45I GTSAC 2 cut(s) 1358, 1436
TspDTI ATGAA 4 cut(s) 351, 487, 789, 1518
TspGWI ACGGA 3 cut(s) 41, 52, 203
TspRI CASTG 2 cut(s) 912, 1107
Van91I CCANNNNNTGG 1 cut(s) 1541
XapI RAATTY 1 cut(s) 130
XceI RCATGY 1 cut(s) 798
XmnI GAANNNNTTC 1 cut(s) 780
XspI CTAG 3 cut(s) 15, 519, 1316
Zsp2I ATGCAT 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.