Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005982

Physical Location & Seq

Genomic Coordinates Reverse (-)

10065663 .. 10066641

Gene Structure 979 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17092

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGACTTGTGGCCTTCAAACATTTGCGACAATCACTTTGGAGTTGGAAATGCAGTGGGATGGAAATCCAAGTATAATACTTGCCATTAATACTTTACTTGGTGTATCACTACCTGTGCAGGTGAAAGACATTGGATTCACTGGGGTATTCAGGCTTATATTTAAGCCTCTGGTTGACCAGTACCCATGCTTTGGAGCTGTTAGCTTTTCCTTGAGAGAAAAGAAAAATTTGGATTTTAAGCTGAAAGTTGTGGGTGGTGACATATCTGCAATACCTGGACTCCAAGATCAACTTGAGGGGACTATAAGCGATTCCATTGAAGATTCGATTACATGGCCTGTTCGAAAAGTTATCACCATTTTGCTGGGGGATTACAGTGATCTGGAGTTAAAGACAGTTGGCATACTAGAGGTGAAGCTTGTGATCTGGAGTTATTACCATTTGGAGCTGCTATATGTTTCATATAGCATGGACAATGGCTTTGTCAACCCGTTTACTCCCAACTTCTCGATGAACGCTTTGGAAAAAATACTTAAAAGTGGGGCAAATGGAATAGATGCTACCGAAAATGAAAAGGAAGCCTCACAGAAGAAAAAGGAGGTTATAATTAGAGGTTTCCTTTCAATAACTGTAATATCTGCCAAAGACTTGCCACCTGTTGATCTGATGGGGAAAGCTGATCTTTATGTGGTTATCACCTTGAAGAAATCAGAAACGAGAAACAAAACTAGGGTTGTTAACGAGAGCTTGAATCCTGTTTGGAATCAAACTTTTGACTTTGTTGTTGAGGATGGATTGCATGACATGCTCATTCTTGAAGTCTATGACCATGATACTTTTGGGAAGGATTATATGGGAAGATGCATCTCGGCTCCAGATCAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0005911 GO:0009506 GO:0009898 GO:0012505 GO:0016020 GO:0016021 GO:0019897 GO:0019898 GO:0030054 GO:0031224 GO:0031226 GO:0031227 GO:0031234 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044232 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0055044 GO:0071944 GO:0098552 GO:0098562 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

295

Amino Acids

33.02

Weight (kDa)

4.83

Isoelectric Point (pI)

22.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	207 - 288	7.8e-24	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02150 AT4G02150
fragaria_vesca	FvH4_6g07130
malus_domestica	MD04G1196000.v1.1 MD07G1209900.v1.1 MD12G1208700.v1.1
prunus_persica	Prupe.6G315900_v2.0.a1 Prupe.6G315900_v2.0.a1 Prupe.6G315900_v2.0.a1
pyrus_communis	pycom04g17330 pycom12g19610
rosa_chinensis	RchiOBHm_Chr3g0456721 RchiOBHm_Chr7g0191281 RchiOBHm_Chr7g0191291
rosa_laevigata	RLG00000025281 RLG00000027861
rosa_multiflora	Rmu_co8463855.1_g000001 Rmu_sc0000133.1_g000026 Rmu_sc0037422.1_g000002
rosa_roxburghii	Rroxscaffold_11G00450370 Rroxscaffold_6G00422510
rosa_rugosa	Rorug03G0015300
rosa_samantha	Rh3AG075800 Rh3BG077700 Rh3CG077500 Rh3DG079400
rosa_wichuraiana	Rw3G006500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	605
AarI	CACCTGC	1 cut(s)	109
Acc36I	ACCTGC	1 cut(s)	109
AccB7I	CCANNNNNTGG	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	226
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	6 cut(s)	17, 320, 624, 703, 751, 818
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	7 cut(s)	197, 204, 241, 418, 448, 677, 747
AluI	AGCT	7 cut(s)	197, 204, 241, 418, 448, 677, 747
AoxI	GGCC	2 cut(s)	10, 335
ApeKI	GCWGC	1 cut(s)	448
ApoI	RAATTY	1 cut(s)	226
ArsI	GACNNNNNNTTYG	4 cut(s)	19, 51, 464, 496
AseI	ATTAAT	1 cut(s)	87
AsuHPI	GGTGA	5 cut(s)	133, 269, 346, 424, 688
AsuII	TTCGAA	1 cut(s)	343
BbvI	GCAGC	1 cut(s)	435
BccI	CCATC	3 cut(s)	53, 661, 785
BciT130I	CCWGG	1 cut(s)	276
BfaI	CTAG	2 cut(s)	407, 729
BfuAI	ACCTGC	1 cut(s)	109
BisI	GCNGC	1 cut(s)	449
BlsI	GCNGC	1 cut(s)	450
Bme1390I	CCNGG	1 cut(s)	276
BmiI	GGNNCC	1 cut(s)	873
BmrFI	CCNGG	1 cut(s)	276
BmrI	ACTGGG	1 cut(s)	150
BmsI	GCATC	3 cut(s)	547, 851, 873
BmuI	ACTGGG	1 cut(s)	150
BpmI	CTGGAG	3 cut(s)	404, 448, 858
Bpu14I	TTCGAA	1 cut(s)	343
BpuEI	CTTGAG	2 cut(s)	232, 314
BsaBI	GATNNNNATC	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	145, 178
Bse8I	GATNNNNATC	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	276
BseGI	GGATG	2 cut(s)	64, 796
BseJI	GATNNNNATC	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseNI	ACTGG	2 cut(s)	145, 178
BseXI	GCAGC	1 cut(s)	435
BseYI	CCCAGC	1 cut(s)	364
BsgI	GTGCAG	1 cut(s)	137
BshFI	GGCC	2 cut(s)	12, 337
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	2 cut(s)	12, 337
Bsp119I	TTCGAA	1 cut(s)	343
Bsp143I	GATC	6 cut(s)	286, 379, 423, 661, 679, 877
BspANI	GGCC	2 cut(s)	12, 337
BspLI	GGNNCC	1 cut(s)	873
BspMI	ACCTGC	1 cut(s)	109
BspT104I	TTCGAA	1 cut(s)	343
BsrI	ACTGG	2 cut(s)	145, 178
BssMI	GATC	6 cut(s)	286, 379, 423, 661, 679, 877
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	3 cut(s)	377, 397, 631
BstAPI	GCANNNNNTGC	1 cut(s)	805
BstBI	TTCGAA	1 cut(s)	343
BstF5I	GGATG	2 cut(s)	64, 796
BstKTI	GATC	6 cut(s)	289, 382, 426, 664, 682, 880
BstMBI	GATC	6 cut(s)	286, 379, 423, 661, 679, 877
BstMWI	GCNNNNNNNGC	1 cut(s)	805
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	808
BstSCI	CCNGG	1 cut(s)	274
BstV1I	GCAGC	1 cut(s)	435
BstXI	CCANNNNNNTGG	1 cut(s)	364
BsuRI	GGCC	2 cut(s)	12, 337
BtsCI	GGATG	2 cut(s)	64, 796
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	3 cut(s)	59, 138, 382
BveI	ACCTGC	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	6 cut(s)	186, 333, 469, 800, 805, 830
CviQI	GTAC	1 cut(s)	181
DpnI	GATC	6 cut(s)	288, 381, 425, 663, 681, 879
DpnII	GATC	6 cut(s)	286, 379, 423, 661, 679, 877
EcoRII	CCWGG	1 cut(s)	274
EcoT22I	ATGCAT	1 cut(s)	866
FaeI	CATG	6 cut(s)	189, 336, 472, 803, 808, 833
FalI	AAGNNNNNCTT	4 cut(s)	276, 308, 666, 698
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	6 cut(s)	185, 332, 468, 799, 804, 829
Fnu4HI	GCNGC	1 cut(s)	449
FokI	GGATG	2 cut(s)	71, 803
Fsp4HI	GCNGC	1 cut(s)	449
FspBI	CTAG	2 cut(s)	407, 729
GluI	GCNGC	1 cut(s)	449
GsaI	CCCAGC	1 cut(s)	368
GsuI	CTGGAG	3 cut(s)	404, 448, 858
HaeIII	GGCC	2 cut(s)	12, 337
Hin1II	CATG	6 cut(s)	189, 336, 472, 803, 808, 833
HincII	GTYRAC	3 cut(s)	175, 487, 739
HindII	GTYRAC	3 cut(s)	175, 487, 739
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	6 cut(s)	135, 279, 311, 323, 751, 763
HpaI	GTTAAC	1 cut(s)	739
HphI	GGTGA	5 cut(s)	133, 269, 346, 424, 688
Hpy166II	GTNNAC	4 cut(s)	175, 487, 495, 739
Hpy188I	TCNGA	2 cut(s)	666, 712
Hpy188III	TCNNGA	5 cut(s)	383, 427, 508, 815, 875
Hpy8I	GTNNAC	4 cut(s)	175, 487, 495, 739
HpyAV	CCTTC	2 cut(s)	23, 838
HpyCH4III	ACNGT	3 cut(s)	377, 397, 631
HpyCH4V	TGCA	5 cut(s)	52, 118, 269, 799, 864
HpyF10VI	GCNNNNNNNGC	1 cut(s)	805
Hsp92II	CATG	6 cut(s)	189, 336, 472, 803, 808, 833
KspAI	GTTAAC	1 cut(s)	739
Kzo9I	GATC	6 cut(s)	286, 379, 423, 661, 679, 877
LmnI	GCTCC	3 cut(s)	194, 445, 877
Lsp1109I	GCAGC	1 cut(s)	435
LweI	GCATC	3 cut(s)	547, 851, 873
MaeI	CTAG	2 cut(s)	407, 729
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	6 cut(s)	288, 381, 425, 663, 681, 879
MboI	GATC	6 cut(s)	286, 379, 423, 661, 679, 877
MboII	GAAGA	4 cut(s)	332, 601, 715, 870
MluCI	AATT	2 cut(s)	226, 606
MlyI	GAGTC	1 cut(s)	273
MmeI	TCCRAC	1 cut(s)	24
MnlI	CCTC	7 cut(s)	177, 289, 403, 592, 592, 605, 781
Mph1103I	ATGCAT	1 cut(s)	866
MseI	TTAA	7 cut(s)	87, 162, 237, 389, 534, 738, 886
MspR9I	CCNGG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	805
NdeII	GATC	6 cut(s)	286, 379, 423, 661, 679, 877
NlaIII	CATG	6 cut(s)	189, 336, 472, 803, 808, 833
NlaIV	GGNNCC	1 cut(s)	873
NmeAIII	GCCGAG	1 cut(s)	848
NmuCI	GTSAC	1 cut(s)	257
NsiI	ATGCAT	1 cut(s)	866
NspI	RCATGY	1 cut(s)	808
NspV	TTCGAA	1 cut(s)	343
PaqCI	CACCTGC	1 cut(s)	109
PfeI	GAWTC	5 cut(s)	135, 311, 323, 751, 763
PflMI	CCANNNNNTGG	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	450
PleI	GAGTC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	273
PshBI	ATTAAT	1 cut(s)	87
PsiI	TTATAA	1 cut(s)	605
Psp6I	CCWGG	1 cut(s)	274
PspFI	CCCAGC	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	873
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SaqAI	TTAA	7 cut(s)	87, 162, 237, 389, 534, 738, 886
SatI	GCNGC	1 cut(s)	449
Sau3AI	GATC	6 cut(s)	286, 379, 423, 661, 679, 877
SchI	GAGTC	1 cut(s)	273
ScrFI	CCNGG	1 cut(s)	276
SfaNI	GCATC	3 cut(s)	547, 851, 873
SfuI	TTCGAA	1 cut(s)	343
SmlI	CTYRAG	2 cut(s)	211, 293
SmoI	CTYRAG	2 cut(s)	211, 293
Sse9I	AATT	2 cut(s)	226, 606
SspMI	CTAG	2 cut(s)	407, 729
StyD4I	CCNGG	1 cut(s)	274
TaaI	ACNGT	3 cut(s)	377, 397, 631
TaqI	TCGA	3 cut(s)	326, 343, 509
TasI	AATT	2 cut(s)	226, 606
TfiI	GAWTC	5 cut(s)	135, 311, 323, 751, 763
Tru1I	TTAA	7 cut(s)	87, 162, 237, 389, 534, 738, 886
Tru9I	TTAA	7 cut(s)	87, 162, 237, 389, 534, 738, 886
TscAI	CASTG	3 cut(s)	59, 145, 382
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	1 cut(s)	448
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	3 cut(s)	450, 527, 585
TspRI	CASTG	3 cut(s)	59, 145, 382
Van91I	CCANNNNNTGG	1 cut(s)	191
VspI	ATTAAT	1 cut(s)	87
XapI	RAATTY	1 cut(s)	226
XceI	RCATGY	1 cut(s)	808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	836
XspI	CTAG	2 cut(s)	407, 729
Zsp2I	ATGCAT	1 cut(s)	866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.