Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037422.1

Orthogroup ID

OG0005982

Physical Location & Seq

Genomic Coordinates Reverse (-)

7026 .. 8437

Gene Structure 1412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037422.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgtaccctttgcaaggcattgtcagacccactatagcagttgattgtgaatctcagtctgtctatgtgaatgatgtcttttgtcttttgatagatgttgtttggatggtgatcatccaacatcaagctcttccttgtctgctgacccttctgaccaacaattataaaaagagcatcaagaaggaagcttgctggacaatttcaaatatcacagctggaaacaaagagcagattcaggctgtagttgatgctaatataattggtccacttattcaactgctttcaactgctgagtttgatataaagaaagaagctgcatgggcagtatcaaatgcgacatctggtggttctcatgatcaaataaaaattcttgtaaatcatgggtgtatcaagccattgtgtgatcttcttatctgccccgatccaagaattgttacagtttgtttagaaggcctggagaacatcttgaaggttggagaagctgagaagaatttgggcacaacaggaggtgtaaatccctatgctcagtcgattgatgatgcaaaagggttggaaaagattgagaatctacagactcatgacaatactgaaatttatgagaaggcagttaagcttctcgagacatattggttggaggacgatgacggtgatgaaacaatgccaccaggtgatgttccaactgttccagctggtggtttcaactttggaggaaatggtccaagtgttccgtctggtggattcaacttcagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0017038 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm Arm_3 IBB

Protein Analysis

250

Amino Acids

27.09

Weight (kDa)

4.54

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02150 AT4G02150
fragaria_vesca	FvH4_6g07130
malus_domestica	MD04G1196000.v1.1 MD07G1209900.v1.1 MD12G1208700.v1.1
prunus_persica	Prupe.6G315900_v2.0.a1 Prupe.6G315900_v2.0.a1 Prupe.6G315900_v2.0.a1
pyrus_communis	pycom04g17330 pycom12g19610
rosa_chinensis	RchiOBHm_Chr3g0456721 RchiOBHm_Chr7g0191281 RchiOBHm_Chr7g0191291
rosa_laevigata	RLG00000025281 RLG00000027861
rosa_multiflora	Rmu_co8463855.1_g000001 Rmu_sc0000133.1_g000026 Rmu_sc0037422.1_g000002
rosa_roxburghii	Rroxscaffold_11G00450370 Rroxscaffold_6G00422510
rosa_rugosa	Rorug03G0015300
rosa_samantha	Rh3AG075800 Rh3BG077700 Rh3CG077500 Rh3DG079400
rosa_wichuraiana	Rw3G006500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	165
AccB7I	CCANNNNNTGG	1 cut(s)	692
AclWI	GGATC	1 cut(s)	416
AcsI	RAATTY	3 cut(s)	366, 490, 591
AcuI	CTGAAG	1 cut(s)	730
AdeI	CACNNNGTG	1 cut(s)	668
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	14, 692, 734
AgsI	TTSAA	6 cut(s)	204, 275, 285, 469, 700, 742
AjnI	CCWGG	2 cut(s)	453, 664
AluBI	AGCT	7 cut(s)	128, 188, 215, 314, 482, 613, 689
AluI	AGCT	7 cut(s)	128, 188, 215, 314, 482, 613, 689
Alw26I	GTCTC	1 cut(s)	614
AlwI	GGATC	1 cut(s)	416
Ama87I	CYCGRG	1 cut(s)	617
AoxI	GGCC	1 cut(s)	451
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	3 cut(s)	366, 490, 591
AspS9I	GGNCC	2 cut(s)	263, 716
AsuHPI	GGTGA	3 cut(s)	121, 659, 680
AvaI	CYCGRG	1 cut(s)	617
AvaII	GGWCC	2 cut(s)	263, 716
BaeGI	GKGCMC	1 cut(s)	500
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	1 cut(s)	100
BciT130I	CCWGG	2 cut(s)	455, 666
BclI	TGATCA	2 cut(s)	111, 355
BcoDI	GTCTC	1 cut(s)	614
BfmI	CTRYAG	3 cut(s)	33, 240, 569
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
Bme1390I	CCNGG	2 cut(s)	455, 666
Bme18I	GGWCC	2 cut(s)	263, 716
BmeT110I	CYCGRG	1 cut(s)	617
BmgT120I	GGNCC	2 cut(s)	263, 716
BmrFI	CCNGG	2 cut(s)	455, 666
BmsI	GCATC	3 cut(s)	183, 238, 529
BpmI	CTGGAG	1 cut(s)	476
BsaBI	GATNNNNATC	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 692, 734
Bse8I	GATNNNNATC	1 cut(s)	110
BseBI	CCWGG	2 cut(s)	455, 666
BseGI	GGATG	2 cut(s)	111, 114
BseJI	GATNNNNATC	1 cut(s)	110
BseLI	CCNNNNNNNGG	3 cut(s)	14, 692, 734
BseMII	CTCAG	4 cut(s)	68, 282, 474, 539
BseSI	GKGCMC	1 cut(s)	500
BseXI	GCAGC	1 cut(s)	301
BshFI	GGCC	1 cut(s)	453
BsiHKCI	CYCGRG	1 cut(s)	617
BslI	CCNNNNNNNGG	3 cut(s)	14, 692, 734
BsmAI	GTCTC	1 cut(s)	614
BsnI	GGCC	1 cut(s)	453
BsoBI	CYCGRG	1 cut(s)	617
Bsp1286I	GDGCHC	1 cut(s)	500
Bsp143I	GATC	4 cut(s)	111, 355, 403, 421
BspANI	GGCC	1 cut(s)	453
BspCNI	CTCAG	4 cut(s)	67, 283, 475, 538
BspHI	TCATGA	2 cut(s)	352, 577
BspPI	GGATC	1 cut(s)	416
BspQI	GCTCTTC	1 cut(s)	135
BssMI	GATC	4 cut(s)	111, 355, 403, 421
Bst2UI	CCWGG	2 cut(s)	455, 666
Bst4CI	ACNGT	3 cut(s)	439, 647, 682
Bst6I	CTCTTC	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	4 cut(s)	54, 291, 483, 525
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstF5I	GGATG	2 cut(s)	111, 114
BstKTI	GATC	4 cut(s)	114, 358, 406, 424
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	4 cut(s)	111, 355, 403, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNI	CCWGG	2 cut(s)	455, 666
BstSCI	CCNGG	2 cut(s)	453, 664
BstSFI	CTRYAG	3 cut(s)	33, 240, 569
BstSLI	GKGCMC	1 cut(s)	500
BstV1I	GCAGC	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	453
BtsCI	GGATG	2 cut(s)	111, 114
Cac8I	GCNNGC	1 cut(s)	190
CciI	TCATGA	2 cut(s)	352, 577
Cfr13I	GGNCC	2 cut(s)	263, 716
CsiI	ACCWGGT	1 cut(s)	664
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	4 cut(s)	318, 353, 380, 578
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	4 cut(s)	54, 291, 483, 525
DpnI	GATC	4 cut(s)	113, 357, 405, 423
DpnII	GATC	4 cut(s)	111, 355, 403, 421
DraIII	CACNNNGTG	1 cut(s)	668
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco147I	AGGCCT	1 cut(s)	453
Eco47I	GGWCC	2 cut(s)	263, 716
Eco57I	CTGAAG	1 cut(s)	730
Eco88I	CYCGRG	1 cut(s)	617
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoRII	CCWGG	2 cut(s)	453, 664
FaeI	CATG	4 cut(s)	321, 356, 383, 581
FatI	CATG	4 cut(s)	317, 352, 379, 577
FbaI	TGATCA	2 cut(s)	111, 355
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	2 cut(s)	101, 118
Fsp4HI	GCNGC	1 cut(s)	315
GluI	GCNGC	1 cut(s)	315
GsuI	CTGGAG	1 cut(s)	476
HaeIII	GGCC	1 cut(s)	453
Hin1II	CATG	4 cut(s)	321, 356, 383, 581
HindIII	AAGCTT	2 cut(s)	186, 611
HinfI	GANTC	5 cut(s)	50, 232, 565, 574, 738
HphI	GGTGA	3 cut(s)	121, 659, 680
Hpy166II	GTNNAC	1 cut(s)	266
Hpy188I	TCNGA	2 cut(s)	26, 153
Hpy188III	TCNNGA	6 cut(s)	178, 353, 466, 578, 617, 619
Hpy8I	GTNNAC	1 cut(s)	266
HpyAV	CCTTC	5 cut(s)	158, 175, 443, 463, 595
HpyCH4III	ACNGT	3 cut(s)	439, 647, 682
HpyCH4V	TGCA	3 cut(s)	13, 317, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	4 cut(s)	54, 291, 483, 525
Hsp92II	CATG	4 cut(s)	321, 356, 383, 581
Ksp22I	TGATCA	2 cut(s)	111, 355
Kzo9I	GATC	4 cut(s)	111, 355, 403, 421
LguI	GCTCTTC	1 cut(s)	135
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	3 cut(s)	183, 238, 529
MabI	ACCWGGT	1 cut(s)	664
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	4 cut(s)	113, 357, 405, 423
MboI	GATC	4 cut(s)	111, 355, 403, 421
MboII	GAAGA	3 cut(s)	122, 398, 499
MhlI	GDGCHC	1 cut(s)	500
MluCI	AATT	7 cut(s)	160, 198, 258, 366, 429, 490, 591
MlyI	GAGTC	1 cut(s)	568
MmeI	TCCRAC	5 cut(s)	142, 454, 531, 612, 701
MnlI	CCTC	3 cut(s)	500, 628, 701
MseI	TTAA	1 cut(s)	609
MspA1I	CMGCKG	2 cut(s)	215, 689
MspR9I	CCNGG	2 cut(s)	455, 666
MvaI	CCWGG	2 cut(s)	455, 666
MwoI	GCNNNNNNNGC	1 cut(s)	320
NdeII	GATC	4 cut(s)	111, 355, 403, 421
NlaIII	CATG	4 cut(s)	321, 356, 383, 581
PaeR7I	CTCGAG	1 cut(s)	617
PagI	TCATGA	2 cut(s)	352, 577
PceI	AGGCCT	1 cut(s)	453
PciSI	GCTCTTC	1 cut(s)	135
PfeI	GAWTC	4 cut(s)	50, 232, 565, 738
PflMI	CCANNNNNTGG	1 cut(s)	692
PkrI	GCNGC	1 cut(s)	316
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
PsiI	TTATAA	1 cut(s)	165
Psp6I	CCWGG	2 cut(s)	453, 664
PspGI	CCWGG	2 cut(s)	453, 664
PspPI	GGNCC	2 cut(s)	263, 716
PvuII	CAGCTG	2 cut(s)	215, 689
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	609
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	4 cut(s)	111, 355, 403, 421
Sau96I	GGNCC	2 cut(s)	263, 716
SchI	GAGTC	1 cut(s)	568
ScrFI	CCNGG	2 cut(s)	455, 666
SduI	GDGCHC	1 cut(s)	500
SexAI	ACCWGGT	1 cut(s)	664
SfaNI	GCATC	3 cut(s)	183, 238, 529
SfcI	CTRYAG	3 cut(s)	33, 240, 569
Sfr274I	CTCGAG	1 cut(s)	617
SinI	GGWCC	2 cut(s)	263, 716
SlaI	CTCGAG	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
Sse9I	AATT	7 cut(s)	160, 198, 258, 366, 429, 490, 591
SseBI	AGGCCT	1 cut(s)	453
StuI	AGGCCT	1 cut(s)	453
StyD4I	CCNGG	2 cut(s)	453, 664
TaaI	ACNGT	3 cut(s)	439, 647, 682
TaqI	TCGA	2 cut(s)	530, 618
TasI	AATT	7 cut(s)	160, 198, 258, 366, 429, 490, 591
TfiI	GAWTC	4 cut(s)	50, 232, 565, 738
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TseI	GCWGC	1 cut(s)	314
TspDTI	ATGAA	1 cut(s)	666
TspGWI	ACGGA	1 cut(s)	717
Van91I	CCANNNNNTGG	1 cut(s)	692
VpaK11BI	GGWCC	2 cut(s)	263, 716
XagI	CCTNNNNNAGG	1 cut(s)	12
XapI	RAATTY	3 cut(s)	366, 490, 591
XhoI	CTCGAG	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.