Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005982

Physical Location & Seq

Genomic Coordinates Reverse (-)

10066922 .. 10067713

Gene Structure 792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17093

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGGTTTTGTGTTTGGTGCTAATGGTATTGATGAGAAATTGGAGAAGAAGCTAGAGCACTTACCGTCCATGGTTGCTGGCGTTTGGAGTGAAGAGTGCCCTCTGCAGCTCGAGGCAACTACTCAGTTTAGGAAGTTGCTATCAATTGAGCACAGCCCTCCAATTGAGGAAGTTATTCAATTTGGTGTTGTTCCTCGCTTTGTAGAGTTTCTAATGAAGGAGAACTTTCATCAACTTCAGTTCGAGGCAGCTTGGGCTCTCACAAACATTGCGTGTGGGACTTCCGAGAACACAAAGGTTGTTTGGGTGTTGGGAAATGTTGCTGGTGATTCTCCAAAATGCCGGGATCTGGTACTTGGCAGTGGAGCTCTGATTCCATTATTATCGCAGTTGAATGAGCATGCAAAGCTCTCTATGTTGAGAAATGCTACTTGGACATTGTCAAACTTTTGCAGGGGCAAGCCACAGCCTCCTTTTGATGAGGTTAAGCCAGCACTTCCAGCTCTAGCTCGTTTGATTCACTCAAATGATGAAGAAGTCTTGACTGATGAGTGTTGGGCTCTTTCATACCTTTCTGATGGTACTAATGACAAAATTCAAGCTGTTATTGAGTCTGGAGTATGCCCCAGGCTTGTTGAACTTCTGCTTCATCCATCTCCATCCATTGCAGATTTTATAATCACAAGACCAGATGAAAAACATGACCGGTTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0017038 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm Arm_3 IBB

Protein Analysis

238

Amino Acids

26.47

Weight (kDa)

5.09

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arm	PF00514	52 - 91	3e-09	Armadillo/beta-catenin-like repeat
Arm	PF00514	111 - 152	1.2e-08	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02150 AT4G02150
fragaria_vesca	FvH4_6g07130
malus_domestica	MD04G1196000.v1.1 MD07G1209900.v1.1 MD12G1208700.v1.1
prunus_persica	Prupe.6G315900_v2.0.a1 Prupe.6G315900_v2.0.a1 Prupe.6G315900_v2.0.a1
pyrus_communis	pycom04g17330 pycom12g19610
rosa_chinensis	RchiOBHm_Chr3g0456721 RchiOBHm_Chr7g0191281 RchiOBHm_Chr7g0191291
rosa_laevigata	RLG00000025281 RLG00000027861
rosa_multiflora	Rmu_co8463855.1_g000001 Rmu_sc0000133.1_g000026 Rmu_sc0037422.1_g000002
rosa_roxburghii	Rroxscaffold_11G00450370 Rroxscaffold_6G00422510
rosa_rugosa	Rorug03G0015300
rosa_samantha	Rh3AG075800 Rh3BG077700 Rh3CG077500 Rh3DG079400
rosa_wichuraiana	Rw3G006500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	677
AclWI	GGATC	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	594
AcuI	CTGAAG	1 cut(s)	221
AfaI	GTAC	2 cut(s)	354, 583
AfiI	CCNNNNNNNGG	1 cut(s)	349
AgeI	ACCGGT	1 cut(s)	705
AgsI	TTSAA	4 cut(s)	179, 394, 599, 638
AjnI	CCWGG	1 cut(s)	626
AjuI	GAANNNNNNNTTGG	2 cut(s)	415, 447
AluBI	AGCT	8 cut(s)	52, 109, 251, 368, 409, 503, 509, 602
AluI	AGCT	8 cut(s)	52, 109, 251, 368, 409, 503, 509, 602
Alw21I	GWGCWC	3 cut(s)	60, 153, 370
AlwI	GGATC	1 cut(s)	354
Ama87I	CYCGRG	1 cut(s)	110
ApeKI	GCWGC	2 cut(s)	106, 248
ApoI	RAATTY	1 cut(s)	594
AsiGI	ACCGGT	1 cut(s)	705
Asp700I	GAANNNNTTC	1 cut(s)	174
AsuC2I	CCSGG	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	338
AvaI	CYCGRG	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	101
BanII	GRGCYC	3 cut(s)	259, 370, 562
Bbv12I	GWGCWC	3 cut(s)	60, 153, 370
BbvI	GCAGC	2 cut(s)	118, 260
BccI	CCATC	3 cut(s)	572, 661, 667
BciT130I	CCWGG	1 cut(s)	628
BcnI	CCSGG	1 cut(s)	344
BfaI	CTAG	2 cut(s)	53, 506
BfmI	CTRYAG	1 cut(s)	104
BisI	GCNGC	2 cut(s)	107, 249
BlsI	GCNGC	2 cut(s)	108, 250
Bme1390I	CCNGG	2 cut(s)	344, 628
BmeT110I	CYCGRG	1 cut(s)	110
BmrFI	CCNGG	2 cut(s)	344, 628
BpmI	CTGGAG	1 cut(s)	636
BpuMI	CCSGG	1 cut(s)	344
BsaJI	CCNNGG	2 cut(s)	69, 626
BsaWI	WCCGGW	1 cut(s)	705
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse118I	RCCGGY	1 cut(s)	705
Bse3DI	GCAATG	2 cut(s)	267, 663
BseBI	CCWGG	1 cut(s)	628
BseDI	CCNNGG	2 cut(s)	69, 626
BseGI	GGATG	2 cut(s)	649, 659
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMI	GCAATG	2 cut(s)	267, 663
BseMII	CTCAG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	118, 260
BshTI	ACCGGT	1 cut(s)	705
BsiHKAI	GWGCWC	3 cut(s)	60, 153, 370
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	343, 706
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmFI	GGGAC	1 cut(s)	292
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	6 cut(s)	60, 101, 153, 259, 370, 562
Bsp143I	GATC	1 cut(s)	346
Bsp19I	CCATGG	1 cut(s)	69
BspCNI	CTCAG	1 cut(s)	136
BspMAI	CTGCAG	1 cut(s)	108
BspPI	GGATC	1 cut(s)	354
BsrDI	GCAATG	2 cut(s)	267, 663
BsrFI	RCCGGY	1 cut(s)	705
BssAI	RCCGGY	1 cut(s)	705
BssECI	CCNNGG	2 cut(s)	69, 626
BssMI	GATC	1 cut(s)	346
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	628
Bst4CI	ACNGT	1 cut(s)	66
Bst6I	CTCTTC	1 cut(s)	87
BstC8I	GCNNGC	4 cut(s)	79, 402, 461, 492
BstDEI	CTNAG	1 cut(s)	123
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	2 cut(s)	649, 659
BstKTI	GATC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 406, 500
BstNI	CCWGG	1 cut(s)	628
BstNSI	RCATGY	1 cut(s)	404
BstSCI	CCNGG	2 cut(s)	342, 626
BstSFI	CTRYAG	1 cut(s)	104
BstSLI	GKGCMC	1 cut(s)	101
BstV1I	GCAGC	2 cut(s)	118, 260
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	649, 659
BtsI	GCAGTG	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	367
Cac8I	GCNNGC	4 cut(s)	79, 402, 461, 492
Cfr10I	RCCGGY	1 cut(s)	705
Csp6I	GTAC	2 cut(s)	353, 582
CspAI	ACCGGT	1 cut(s)	705
CviAII	CATG	3 cut(s)	70, 401, 701
CviQI	GTAC	2 cut(s)	353, 582
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Ecl136II	GAGCTC	1 cut(s)	368
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	3 cut(s)	259, 370, 562
Eco53kI	GAGCTC	1 cut(s)	368
Eco57I	CTGAAG	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	626
EcoT14I	CCWWGG	1 cut(s)	69
EcoT38I	GRGCYC	3 cut(s)	259, 370, 562
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	3 cut(s)	73, 404, 704
FaiI	YATR	7 cut(s)	71, 402, 416, 568, 622, 677, 702
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	3 cut(s)	69, 400, 700
Fnu4HI	GCNGC	2 cut(s)	107, 249
FokI	GGATG	2 cut(s)	636, 646
FriOI	GRGCYC	3 cut(s)	259, 370, 562
Fsp4HI	GCNGC	2 cut(s)	107, 249
FspBI	CTAG	2 cut(s)	53, 506
GluI	GCNGC	2 cut(s)	107, 249
GsuI	CTGGAG	1 cut(s)	636
HapII	CCGG	2 cut(s)	343, 706
Hin1II	CATG	3 cut(s)	73, 404, 704
HinfI	GANTC	4 cut(s)	329, 373, 517, 611
HpaII	CCGG	2 cut(s)	343, 706
HphI	GGTGA	1 cut(s)	338
Hpy188I	TCNGA	3 cut(s)	286, 372, 577
Hpy188III	TCNNGA	2 cut(s)	541, 615
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	1 cut(s)	66
HpyCH4V	TGCA	4 cut(s)	106, 404, 453, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 406, 500
HpyF3I	CTNAG	1 cut(s)	123
Hsp92II	CATG	3 cut(s)	73, 404, 704
Kzo9I	GATC	1 cut(s)	346
LmnI	GCTCC	1 cut(s)	365
Lsp1109I	GCAGC	2 cut(s)	118, 260
MaeI	CTAG	2 cut(s)	53, 506
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	3 cut(s)	58, 104, 545
MfeI	CAATTG	2 cut(s)	144, 162
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	6 cut(s)	60, 101, 153, 259, 370, 562
MluCI	AATT	5 cut(s)	38, 144, 162, 179, 594
MlyI	GAGTC	1 cut(s)	620
MnlI	CCTC	8 cut(s)	106, 111, 160, 168, 204, 238, 475, 480
MroXI	GAANNNNTTC	1 cut(s)	174
MseI	TTAA	1 cut(s)	486
MslI	CAYNNNNRTG	1 cut(s)	525
MspI	CCGG	2 cut(s)	343, 706
MspR9I	CCNGG	2 cut(s)	344, 628
MunI	CAATTG	2 cut(s)	144, 162
MvaI	CCWGG	1 cut(s)	628
MwoI	GCNNNNNNNGC	3 cut(s)	254, 406, 500
NciI	CCSGG	1 cut(s)	344
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	3 cut(s)	73, 404, 704
NspI	RCATGY	1 cut(s)	404
PaeI	GCATGC	1 cut(s)	404
PaeR7I	CTCGAG	1 cut(s)	110
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	3 cut(s)	329, 373, 517
PflFI	GACNNNGTC	1 cut(s)	439
PinAI	ACCGGT	1 cut(s)	705
PkrI	GCNGC	2 cut(s)	108, 250
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
PsiI	TTATAA	1 cut(s)	677
Psp124BI	GAGCTC	1 cut(s)	370
Psp6I	CCWGG	1 cut(s)	626
PspGI	CCWGG	1 cut(s)	626
PspXI	VCTCGAGB	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	108
PsuI	RGATCY	1 cut(s)	346
PsyI	GACNNNGTC	1 cut(s)	439
RsaI	GTAC	2 cut(s)	354, 583
RsaNI	GTAC	2 cut(s)	353, 582
RseI	CAYNNNNRTG	1 cut(s)	525
SacI	GAGCTC	1 cut(s)	370
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	2 cut(s)	107, 249
Sau3AI	GATC	1 cut(s)	346
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	2 cut(s)	344, 628
SduI	GDGCHC	6 cut(s)	60, 101, 153, 259, 370, 562
SfcI	CTRYAG	1 cut(s)	104
Sfr274I	CTCGAG	1 cut(s)	110
SlaI	CTCGAG	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SphI	GCATGC	1 cut(s)	404
Sse9I	AATT	5 cut(s)	38, 144, 162, 179, 594
SspMI	CTAG	2 cut(s)	53, 506
SstI	GAGCTC	1 cut(s)	370
StyD4I	CCNGG	2 cut(s)	342, 626
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	66
TaqI	TCGA	2 cut(s)	111, 243
TasI	AATT	5 cut(s)	38, 144, 162, 179, 594
TfiI	GAWTC	3 cut(s)	329, 373, 517
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	1 cut(s)	367
TseI	GCWGC	2 cut(s)	106, 248
TspDTI	ATGAA	6 cut(s)	218, 230, 546, 555, 638, 708
TspRI	CASTG	1 cut(s)	367
Tth111I	GACNNNGTC	1 cut(s)	439
XapI	RAATTY	1 cut(s)	594
XceI	RCATGY	1 cut(s)	404
XhoI	CTCGAG	1 cut(s)	110
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	2 cut(s)	53, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.