Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8463855.1

Orthogroup ID

OG0005982

Physical Location & Seq

Genomic Coordinates Forward (+)

565 .. 1880

Gene Structure 1316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8463855.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atggttgctggagtttggagtgaagagggcactctgcagctcgaggcaactactcagtttaggaagttgctatcaattgagcgcagccctccaattgaggaagttattcaatctggtgttgttcctcgctttgtggagtttctaatgaaggagaactttcatcaacttcagttcgaggcagcttgggctctcacaaacattgcgtctgggacgtctgagaacacaaaggtggttattgaacatggtgctgttcctatctttgtcaaattactgagttctccaagtgatgatgttcgtgagcaggctgtttgggcgttggggaatgttgctggtgattccccaaaatgccgggatctggtacttggcagtggagctctgattccattgttatcgcagttgaatgagcatgcaaagctctccatgttgagaaatgctacttggacattgtcaaacttttgcaggggcaagccacagcctccttttgatgaggttaagccagcacttccagctctagctcgtttgattcactcaaatgatgaagaagtcttgactgatgcatgttgggctctttcatacctttctgatggtactaatgacaaaattcaagccgttattgagtctggagtatgccccaggcttgttgaacttctgcttcatccatctccatctgtactgatccctgctctccgcacagtcggaaatattgttactggtgatgatatgcaaactcaggtatttgttgcatttgaccttttctgtgtcttgttttcccttgtagatgttggtgttttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0017038 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm Arm_3 IBB

Protein Analysis

264

Amino Acids

28.83

Weight (kDa)

4.82

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02150 AT4G02150
fragaria_vesca	FvH4_6g07130
malus_domestica	MD04G1196000.v1.1 MD07G1209900.v1.1 MD12G1208700.v1.1
prunus_persica	Prupe.6G315900_v2.0.a1 Prupe.6G315900_v2.0.a1 Prupe.6G315900_v2.0.a1
pyrus_communis	pycom04g17330 pycom12g19610
rosa_chinensis	RchiOBHm_Chr3g0456721 RchiOBHm_Chr7g0191281 RchiOBHm_Chr7g0191291
rosa_laevigata	RLG00000025281 RLG00000027861
rosa_multiflora	Rmu_co8463855.1_g000001 Rmu_sc0000133.1_g000026 Rmu_sc0037422.1_g000002
rosa_roxburghii	Rroxscaffold_11G00450370 Rroxscaffold_6G00422510
rosa_rugosa	Rorug03G0015300
rosa_samantha	Rh3AG075800 Rh3BG077700 Rh3CG077500 Rh3DG079400
rosa_wichuraiana	Rw3G006500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	215
AciI	CCGC	1 cut(s)	688
AclWI	GGATC	2 cut(s)	360, 670
AcsI	RAATTY	1 cut(s)	600
AcuI	CTGAAG	1 cut(s)	152
AcyI	GRCGYC	1 cut(s)	212
AfaI	GTAC	3 cut(s)	360, 589, 672
AfiI	CCNNNNNNNGG	1 cut(s)	355
AgsI	TTSAA	5 cut(s)	110, 239, 400, 605, 644
AjnI	CCWGG	1 cut(s)	632
AjuI	GAANNNNNNNTTGG	2 cut(s)	421, 453
AleI	CACNNNNGTG	1 cut(s)	227
AluBI	AGCT	6 cut(s)	40, 182, 374, 415, 509, 515
AluI	AGCT	6 cut(s)	40, 182, 374, 415, 509, 515
Alw21I	GWGCWC	1 cut(s)	376
AlwI	GGATC	2 cut(s)	360, 670
Ama87I	CYCGRG	1 cut(s)	41
ApeKI	GCWGC	3 cut(s)	37, 84, 179
ApoI	RAATTY	1 cut(s)	600
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
Asp700I	GAANNNNTTC	1 cut(s)	105
AspLEI	GCGC	1 cut(s)	84
AsuC2I	CCSGG	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	344, 725
AvaI	CYCGRG	1 cut(s)	41
BaeGI	GKGCMC	1 cut(s)	32
BanII	GRGCYC	3 cut(s)	190, 376, 568
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	3 cut(s)	49, 96, 191
BccI	CCATC	3 cut(s)	578, 667, 673
BceAI	ACGGC	1 cut(s)	593
BciT130I	CCWGG	1 cut(s)	634
BcnI	CCSGG	1 cut(s)	350
BfaI	CTAG	1 cut(s)	512
BfmI	CTRYAG	1 cut(s)	35
BisI	GCNGC	3 cut(s)	38, 85, 180
BlsI	GCNGC	3 cut(s)	39, 86, 181
Bme1390I	CCNGG	2 cut(s)	350, 634
BmeT110I	CYCGRG	1 cut(s)	41
BmrFI	CCNGG	2 cut(s)	350, 634
BmsI	GCATC	1 cut(s)	544
BpmI	CTGGAG	2 cut(s)	30, 642
BpuMI	CCSGG	1 cut(s)	350
BsaHI	GRCGYC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	632
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse1I	ACTGG	1 cut(s)	715
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	634
BseDI	CCNNGG	1 cut(s)	632
BseGI	GGATG	1 cut(s)	655
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	4 cut(s)	68, 207, 263, 743
BseNI	ACTGG	1 cut(s)	715
BseSI	GKGCMC	1 cut(s)	32
BseXI	GCAGC	3 cut(s)	49, 96, 191
BsiHKAI	GWGCWC	1 cut(s)	376
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	349
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	223
BsoBI	CYCGRG	1 cut(s)	41
Bsp1286I	GDGCHC	4 cut(s)	32, 190, 376, 568
Bsp143I	GATC	2 cut(s)	352, 675
BspACI	CCGC	1 cut(s)	688
BspCNI	CTCAG	4 cut(s)	67, 208, 264, 742
BspMAI	CTGCAG	1 cut(s)	39
BspPI	GGATC	2 cut(s)	360, 670
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	715
BssECI	CCNNGG	1 cut(s)	632
BssMI	GATC	2 cut(s)	352, 675
BssNI	GRCGYC	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	634
Bst4CI	ACNGT	1 cut(s)	694
Bst6I	CTCTTC	1 cut(s)	18
BstACI	GRCGYC	1 cut(s)	212
BstC8I	GCNNGC	4 cut(s)	303, 408, 467, 498
BstDEI	CTNAG	4 cut(s)	54, 216, 272, 729
BstF5I	GGATG	1 cut(s)	655
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	2 cut(s)	355, 678
BstMBI	GATC	2 cut(s)	352, 675
BstMWI	GCNNNNNNNGC	5 cut(s)	185, 311, 412, 506, 563
BstNI	CCWGG	1 cut(s)	634
BstNSI	RCATGY	2 cut(s)	410, 561
BstSCI	CCNGG	2 cut(s)	348, 632
BstSFI	CTRYAG	1 cut(s)	35
BstSLI	GKGCMC	1 cut(s)	32
BstV1I	GCAGC	3 cut(s)	49, 96, 191
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	655
BtsI	GCAGTG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	373
Cac8I	GCNNGC	4 cut(s)	303, 408, 467, 498
CfoI	GCGC	1 cut(s)	84
CseI	GACGC	1 cut(s)	192
Csp6I	GTAC	3 cut(s)	359, 588, 671
CviAII	CATG	4 cut(s)	242, 407, 421, 558
CviQI	GTAC	3 cut(s)	359, 588, 671
DdeI	CTNAG	4 cut(s)	54, 216, 272, 729
DpnI	GATC	2 cut(s)	354, 677
DpnII	GATC	2 cut(s)	352, 675
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Ecl136II	GAGCTC	1 cut(s)	374
Eco24I	GRGCYC	3 cut(s)	190, 376, 568
Eco53kI	GAGCTC	1 cut(s)	374
Eco57I	CTGAAG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	41
EcoICRI	GAGCTC	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	632
EcoT22I	ATGCAT	1 cut(s)	559
EcoT38I	GRGCYC	3 cut(s)	190, 376, 568
FaeI	CATG	4 cut(s)	245, 410, 424, 561
FaiI	YATR	8 cut(s)	243, 408, 422, 559, 574, 628, 722, 793
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	4 cut(s)	241, 406, 420, 557
Fnu4HI	GCNGC	3 cut(s)	38, 85, 180
FokI	GGATG	1 cut(s)	642
FriOI	GRGCYC	3 cut(s)	190, 376, 568
Fsp4HI	GCNGC	3 cut(s)	38, 85, 180
FspBI	CTAG	1 cut(s)	512
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	3 cut(s)	38, 85, 180
GsuI	CTGGAG	2 cut(s)	30, 642
HapII	CCGG	1 cut(s)	349
HgaI	GACGC	1 cut(s)	192
HhaI	GCGC	1 cut(s)	84
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	4 cut(s)	245, 410, 424, 561
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HinfI	GANTC	4 cut(s)	335, 379, 523, 617
HpaII	CCGG	1 cut(s)	349
HphI	GGTGA	2 cut(s)	344, 725
Hpy188I	TCNGA	4 cut(s)	217, 378, 583, 698
Hpy188III	TCNNGA	3 cut(s)	296, 547, 621
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	694
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	6 cut(s)	37, 410, 459, 557, 724, 743
HpyF10VI	GCNNNNNNNGC	5 cut(s)	185, 311, 412, 506, 563
HpyF3I	CTNAG	4 cut(s)	54, 216, 272, 729
HpySE526I	ACGT	1 cut(s)	212
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	4 cut(s)	245, 410, 424, 561
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	352, 675
LmnI	GCTCC	1 cut(s)	371
Lsp1109I	GCAGC	3 cut(s)	49, 96, 191
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	706
MalI	GATC	2 cut(s)	354, 677
MboI	GATC	2 cut(s)	352, 675
MboII	GAAGA	2 cut(s)	35, 551
MfeI	CAATTG	2 cut(s)	75, 93
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	4 cut(s)	32, 190, 376, 568
MluCI	AATT	4 cut(s)	75, 93, 266, 600
MlyI	GAGTC	1 cut(s)	626
MmeI	TCCRAC	1 cut(s)	676
MnlI	CCTC	8 cut(s)	19, 37, 91, 99, 135, 169, 481, 486
Mph1103I	ATGCAT	1 cut(s)	559
MroXI	GAANNNNTTC	1 cut(s)	105
MseI	TTAA	1 cut(s)	492
MslI	CAYNNNNRTG	2 cut(s)	227, 531
MspI	CCGG	1 cut(s)	349
MspR9I	CCNGG	2 cut(s)	350, 634
MunI	CAATTG	2 cut(s)	75, 93
MvaI	CCWGG	1 cut(s)	634
MwoI	GCNNNNNNNGC	5 cut(s)	185, 311, 412, 506, 563
NciI	CCSGG	1 cut(s)	350
NdeII	GATC	2 cut(s)	352, 675
NlaIII	CATG	4 cut(s)	245, 410, 424, 561
NsiI	ATGCAT	1 cut(s)	559
NspI	RCATGY	2 cut(s)	410, 561
OliI	CACNNNNGTG	1 cut(s)	227
PaeI	GCATGC	1 cut(s)	410
PaeR7I	CTCGAG	1 cut(s)	41
PdmI	GAANNNNTTC	1 cut(s)	105
PfeI	GAWTC	3 cut(s)	335, 379, 523
PflFI	GACNNNGTC	1 cut(s)	445
PkrI	GCNGC	3 cut(s)	39, 86, 181
PleI	GAGTC	1 cut(s)	625
PpsI	GAGTC	1 cut(s)	625
Psp124BI	GAGCTC	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	632
PspGI	CCWGG	1 cut(s)	632
PspXI	VCTCGAGB	1 cut(s)	41
PstI	CTGCAG	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	352
PsyI	GACNNNGTC	1 cut(s)	445
RsaI	GTAC	3 cut(s)	360, 589, 672
RsaNI	GTAC	3 cut(s)	359, 588, 671
RseI	CAYNNNNRTG	2 cut(s)	227, 531
SacI	GAGCTC	1 cut(s)	376
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	3 cut(s)	38, 85, 180
Sau3AI	GATC	2 cut(s)	352, 675
SchI	GAGTC	1 cut(s)	626
ScrFI	CCNGG	2 cut(s)	350, 634
SduI	GDGCHC	4 cut(s)	32, 190, 376, 568
SfaNI	GCATC	1 cut(s)	544
SfcI	CTRYAG	1 cut(s)	35
Sfr274I	CTCGAG	1 cut(s)	41
SlaI	CTCGAG	1 cut(s)	41
SmiMI	CAYNNNNRTG	2 cut(s)	227, 531
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SphI	GCATGC	1 cut(s)	410
Sse9I	AATT	4 cut(s)	75, 93, 266, 600
SsiI	CCGC	1 cut(s)	688
SspI	AATATT	1 cut(s)	703
SspMI	CTAG	1 cut(s)	512
SstI	GAGCTC	1 cut(s)	376
StyD4I	CCNGG	2 cut(s)	348, 632
TaaI	ACNGT	1 cut(s)	694
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	2 cut(s)	42, 174
TasI	AATT	4 cut(s)	75, 93, 266, 600
TatI	WGTACW	1 cut(s)	670
TfiI	GAWTC	3 cut(s)	335, 379, 523
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	1 cut(s)	373
TseI	GCWGC	3 cut(s)	37, 84, 179
TspDTI	ATGAA	5 cut(s)	149, 161, 552, 561, 644
TspRI	CASTG	1 cut(s)	373
Tth111I	GACNNNGTC	1 cut(s)	445
XapI	RAATTY	1 cut(s)	600
XceI	RCATGY	2 cut(s)	410, 561
XhoI	CTCGAG	1 cut(s)	41
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	1 cut(s)	512
ZraI	GACGTC	1 cut(s)	213
Zsp2I	ATGCAT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.