Rmu_sc0000133.1_g000026

Belongs to the importin alpha family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000133.1
Physical Location & Seq
Forward (+)
121843 .. 124947
3105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000133.1_g000026.1.cds

Sequence Viewer

Length: 1251 bp
atgtcgttgaggccgaacgcgagggcggaggtccgccgcaacaggtacaaggtggcggtggacgcggaggaggggcggcggcgcagggaggacaatatggtggagatcaggaagaatcgcagagaagagagcctccagaagaagcgccgcgaggggtttcagccgcagcaattgccggctaatcttcagtcgccggcgctggagaagaagctagagcacttaccgtccatggttgctggagtttggagtgaagagggcactctgcagctcgaggcaactactcagtttaggaagttgctatcaattgagcgcagccctccaattgaggaagttattcaatctggtgttgttcctcgctttgtggagtttctaatgaaggagaactttcatcaacttcagttcgaggcagcttgggctctcacaaacattgcgtctgggacgtctgagaacacaaaggtggttattgaacatggtgctgttcctatctttgtcaaattactgagttctccaagtgatgatgttcgtgagcaggtgatcatccaacatcaagctcttccttgtctgctgacccttctgaccaacaattataaaaagagcatcaagaaggaagcctgctggacaatttcaaatatcacagctggaaacaaagagcagattcaggctgtagtcgatgctaatataattggtccacttattcaattgctttcaactgctgagtttgatataaagaaagaagctgcatgggcagtatcaaatgcgacatctggtggttcccatgatcaaataaagattcttgtaaatcatgggtgtatcaaaccattgtgtgatcttcttatctgccccgatccaagaattgttactgtttgtttagaaggcctggagaacatcttgaaggttggagaagctgagaagaatttgggcacaacaggaggtgtaaatccctatgctcagtcgattgatgatgcagaagggttggaaaagattgagaatctacagactcatgacaatactgaaatttatgagaaggcagttaagcttctcgagacatattggttggaggacgatgacggtgatgaaacaatgccaccgggtgatgttccaactgttccagctggtggtttcaacttcggaggaaatggtccaagtgttccaagttaccatgcactcaagtccttgagtatggccaaggcaatagtccagtccggtcaggtcaggtcaggtcaagcgtcttcttatgtcgggtctctttag

Protein Analysis

416

Amino Acids

45.92

Weight (kDa)

5.56

Isoelectric Point (pI)

56.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 588
AarI CACCTGC 1 cut(s) 520
AatII GACGTC 1 cut(s) 443
Acc36I ACCTGC 1 cut(s) 520
AccB7I CCANNNNNTGG 1 cut(s) 1115
AccII CGCG 3 cut(s) 20, 65, 150
AciI CCGC 9 cut(s) 26, 34, 37, 56, 65, 76, 79, 148, 164
AclWI GGATC 1 cut(s) 839
AcoI YGGCCR 1 cut(s) 1182
AcsI RAATTY 2 cut(s) 913, 1014
AcuI CTGAAG 2 cut(s) 170, 380
AcyI GRCGYC 1 cut(s) 440
AdeI CACNNNGTG 1 cut(s) 1091
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 1115
AgsI TTSAA 7 cut(s) 338, 467, 627, 698, 708, 892, 1123
AjnI CCWGG 1 cut(s) 876
AleI CACNNNNGTG 1 cut(s) 455
AluBI AGCT 9 cut(s) 211, 268, 410, 551, 638, 737, 905, 1036, 1112
AluI AGCT 9 cut(s) 211, 268, 410, 551, 638, 737, 905, 1036, 1112
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 1 cut(s) 1037
AlwI GGATC 1 cut(s) 839
Ama87I CYCGRG 2 cut(s) 269, 1040
AoxI GGCC 3 cut(s) 11, 874, 1182
ApeKI GCWGC 5 cut(s) 166, 265, 312, 407, 737
ApoI RAATTY 2 cut(s) 913, 1014
ArsI GACNNNNNNTTYG 2 cut(s) 416, 448
Asp700I GAANNNNTTC 1 cut(s) 333
AspLEI GCGC 4 cut(s) 84, 147, 199, 312
AspS9I GGNCC 3 cut(s) 31, 686, 1139
AsuC2I CCSGG 1 cut(s) 1089
AsuHPI GGTGA 3 cut(s) 544, 1082, 1103
AvaI CYCGRG 2 cut(s) 269, 1040
AvaII GGWCC 3 cut(s) 31, 686, 1139
BaeGI GKGCMC 2 cut(s) 260, 923
BalI TGGCCA 1 cut(s) 1184
BanII GRGCYC 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 1221
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 5 cut(s) 178, 277, 324, 419, 724
BciT130I CCWGG 1 cut(s) 878
BclI TGATCA 2 cut(s) 534, 778
BcnI CCSGG 1 cut(s) 1089
BcoDI GTCTC 1 cut(s) 1037
BfaI CTAG 1 cut(s) 212
BfmI CTRYAG 3 cut(s) 263, 663, 992
BfoI RGCGCY 2 cut(s) 148, 200
BfuAI ACCTGC 1 cut(s) 520
Bme1390I CCNGG 2 cut(s) 878, 1089
Bme18I GGWCC 3 cut(s) 31, 686, 1139
BmeT110I CYCGRG 2 cut(s) 269, 1040
BmgT120I GGNCC 3 cut(s) 31, 686, 1139
BmiI GGNNCC 1 cut(s) 772
BmrFI CCNGG 2 cut(s) 878, 1089
BmsI GCATC 3 cut(s) 606, 661, 952
BpiI GAAGAC 1 cut(s) 1221
BpmI CTGGAG 4 cut(s) 119, 221, 258, 899
BpuEI CTTGAG 2 cut(s) 1151, 1195
BpuMI CCSGG 1 cut(s) 1089
BsaHI GRCGYC 1 cut(s) 440
BsaJI CCNNGG 2 cut(s) 228, 1185
BsaWI WCCGGW 1 cut(s) 1202
Bsc4I CCNNNNNNNGG 1 cut(s) 1115
Bse118I RCCGGY 2 cut(s) 175, 193
Bse1I ACTGG 1 cut(s) 1198
Bse3DI GCAATG 1 cut(s) 426
BseBI CCWGG 1 cut(s) 878
BseDI CCNNGG 2 cut(s) 228, 1185
BseGI GGATG 1 cut(s) 537
BseLI CCNNNNNNNGG 1 cut(s) 1115
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 6 cut(s) 296, 435, 491, 705, 897, 962
BseNI ACTGG 1 cut(s) 1198
BseRI GAGGAG 1 cut(s) 83
BseSI GKGCMC 2 cut(s) 260, 923
BseXI GCAGC 5 cut(s) 178, 277, 324, 419, 724
Bsh1236I CGCG 3 cut(s) 20, 65, 150
BshFI GGCC 3 cut(s) 13, 876, 1184
BsiHKAI GWGCWC 1 cut(s) 219
BsiHKCI CYCGRG 2 cut(s) 269, 1040
BsiSI CCGG 4 cut(s) 176, 194, 1088, 1203
BslFI GGGAC 1 cut(s) 451
BslI CCNNNNNNNGG 1 cut(s) 1115
BsmAI GTCTC 1 cut(s) 1037
BsmFI GGGAC 1 cut(s) 451
BsnI GGCC 3 cut(s) 13, 876, 1184
BsoBI CYCGRG 2 cut(s) 269, 1040
Bsp1286I GDGCHC 4 cut(s) 219, 260, 418, 923
Bsp143I GATC 5 cut(s) 105, 534, 778, 826, 844
Bsp19I CCATGG 1 cut(s) 228
BspACI CCGC 9 cut(s) 26, 34, 37, 56, 65, 76, 79, 148, 164
BspANI GGCC 3 cut(s) 13, 876, 1184
BspCNI CTCAG 6 cut(s) 295, 436, 492, 706, 898, 961
BspFNI CGCG 3 cut(s) 20, 65, 150
BspHI TCATGA 1 cut(s) 1000
BspLI GGNNCC 1 cut(s) 772
BspMAI CTGCAG 1 cut(s) 267
BspMI ACCTGC 1 cut(s) 520
BspPI GGATC 1 cut(s) 839
BspQI GCTCTTC 1 cut(s) 558
BsrDI GCAATG 1 cut(s) 426
BsrFI RCCGGY 2 cut(s) 175, 193
BsrI ACTGG 1 cut(s) 1198
BssAI RCCGGY 2 cut(s) 175, 193
BssECI CCNNGG 2 cut(s) 228, 1185
BssMI GATC 5 cut(s) 105, 534, 778, 826, 844
BssNI GRCGYC 1 cut(s) 440
BssT1I CCWWGG 2 cut(s) 228, 1185
Bst2UI CCWGG 1 cut(s) 878
Bst4CI ACNGT 4 cut(s) 225, 862, 1070, 1105
Bst6I CTCTTC 3 cut(s) 120, 246, 558
BstACI GRCGYC 1 cut(s) 440
BstAPI GCANNNNNTGC 1 cut(s) 172
BstC8I GCNNGC 3 cut(s) 177, 195, 613
BstDEI CTNAG 6 cut(s) 282, 444, 500, 714, 906, 948
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 537
BstFNI CGCG 3 cut(s) 20, 65, 150
BstH2I RGCGCY 2 cut(s) 148, 200
BstHHI GCGC 4 cut(s) 84, 147, 199, 312
BstKTI GATC 5 cut(s) 108, 537, 781, 829, 847
BstMAI GTCTC 1 cut(s) 1037
BstMBI GATC 5 cut(s) 105, 534, 778, 826, 844
BstMWI GCNNNNNNNGC 4 cut(s) 62, 172, 413, 743
BstNI CCWGG 1 cut(s) 878
BstSCI CCNGG 2 cut(s) 876, 1087
BstSFI CTRYAG 3 cut(s) 263, 663, 992
BstSLI GKGCMC 2 cut(s) 260, 923
BstUI CGCG 3 cut(s) 20, 65, 150
BstV1I GCAGC 5 cut(s) 178, 277, 324, 419, 724
BstV2I GAAGAC 1 cut(s) 1221
BsuRI GGCC 3 cut(s) 13, 876, 1184
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 1 cut(s) 537
BveI ACCTGC 1 cut(s) 520
Cac8I GCNNGC 3 cut(s) 177, 195, 613
CciI TCATGA 1 cut(s) 1000
CfoI GCGC 4 cut(s) 84, 147, 199, 312
Cfr10I RCCGGY 2 cut(s) 175, 193
Cfr13I GGNCC 3 cut(s) 31, 686, 1139
CseI GACGC 3 cut(s) 71, 420, 1215
Csp6I GTAC 1 cut(s) 46
CviAII CATG 7 cut(s) 229, 470, 741, 776, 803, 1001, 1160
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 6 cut(s) 282, 444, 500, 714, 906, 948
DpnI GATC 5 cut(s) 107, 536, 780, 828, 846
DpnII GATC 5 cut(s) 105, 534, 778, 826, 844
DraIII CACNNNGTG 1 cut(s) 1091
EaeI YGGCCR 1 cut(s) 1182
Eam1104I CTCTTC 3 cut(s) 120, 246, 558
EarI CTCTTC 3 cut(s) 120, 246, 558
EciI GGCGGA 2 cut(s) 23, 41
Eco130I CCWWGG 2 cut(s) 228, 1185
Eco147I AGGCCT 1 cut(s) 876
Eco24I GRGCYC 1 cut(s) 418
Eco47I GGWCC 3 cut(s) 31, 686, 1139
Eco57I CTGAAG 2 cut(s) 170, 380
Eco88I CYCGRG 2 cut(s) 269, 1040
EcoRII CCWGG 1 cut(s) 876
EcoT14I CCWWGG 2 cut(s) 228, 1185
EcoT38I GRGCYC 1 cut(s) 418
ErhI CCWWGG 2 cut(s) 228, 1185
FaeI CATG 7 cut(s) 232, 473, 744, 779, 806, 1004, 1163
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FaqI GGGAC 1 cut(s) 451
FatI CATG 7 cut(s) 228, 469, 740, 775, 802, 1000, 1159
FbaI TGATCA 2 cut(s) 534, 778
FokI GGATG 1 cut(s) 524
FriOI GRGCYC 1 cut(s) 418
FspBI CTAG 1 cut(s) 212
GlaI GCGC 4 cut(s) 83, 146, 198, 311
GsuI CTGGAG 4 cut(s) 119, 221, 258, 899
HaeII RGCGCY 2 cut(s) 148, 200
HaeIII GGCC 3 cut(s) 13, 876, 1184
HapII CCGG 4 cut(s) 176, 194, 1088, 1203
HgaI GACGC 3 cut(s) 71, 420, 1215
HhaI GCGC 4 cut(s) 84, 147, 199, 312
Hin1I GRCGYC 1 cut(s) 440
Hin1II CATG 7 cut(s) 232, 473, 744, 779, 806, 1004, 1163
Hin6I GCGC 4 cut(s) 82, 145, 197, 310
HinP1I GCGC 4 cut(s) 82, 145, 197, 310
HindIII AAGCTT 1 cut(s) 1034
HinfI GANTC 5 cut(s) 115, 655, 790, 988, 997
HpaII CCGG 4 cut(s) 176, 194, 1088, 1203
HphI GGTGA 3 cut(s) 544, 1082, 1103
Hpy166II GTNNAC 2 cut(s) 61, 689
Hpy188I TCNGA 3 cut(s) 445, 576, 1130
Hpy188III TCNNGA 8 cut(s) 109, 136, 524, 601, 889, 1001, 1040, 1042
Hpy8I GTNNAC 2 cut(s) 61, 689
HpyAV CCTTC 7 cut(s) 370, 581, 598, 866, 886, 962, 1018
HpyCH4III ACNGT 4 cut(s) 225, 862, 1070, 1105
HpyCH4IV ACGT 1 cut(s) 440
HpyCH4V TGCA 4 cut(s) 265, 740, 965, 1163
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 172, 413, 743
HpyF3I CTNAG 6 cut(s) 282, 444, 500, 714, 906, 948
HpySE526I ACGT 1 cut(s) 440
Hsp92I GRCGYC 1 cut(s) 440
Hsp92II CATG 7 cut(s) 232, 473, 744, 779, 806, 1004, 1163
HspAI GCGC 4 cut(s) 82, 145, 197, 310
KroI GCCGGC 2 cut(s) 175, 193
KroNI GCCGGC 2 cut(s) 177, 195
Ksp22I TGATCA 2 cut(s) 534, 778
Kzo9I GATC 5 cut(s) 105, 534, 778, 826, 844
LguI GCTCTTC 1 cut(s) 558
Lsp1109I GCAGC 5 cut(s) 178, 277, 324, 419, 724
LweI GCATC 3 cut(s) 606, 661, 952
MaeI CTAG 1 cut(s) 212
MaeII ACGT 1 cut(s) 440
MaeIII GTNAC 2 cut(s) 856, 1154
MalI GATC 5 cut(s) 107, 536, 780, 828, 846
MboI GATC 5 cut(s) 105, 534, 778, 826, 844
MfeI CAATTG 4 cut(s) 170, 303, 321, 698
MhlI GDGCHC 4 cut(s) 219, 260, 418, 923
MlsI TGGCCA 1 cut(s) 1184
MluNI TGGCCA 1 cut(s) 1184
MlyI GAGTC 1 cut(s) 991
MmeI TCCRAC 5 cut(s) 565, 877, 954, 1035, 1124
Mox20I TGGCCA 1 cut(s) 1184
MreI CGCCGGCG 1 cut(s) 193
MroNI GCCGGC 2 cut(s) 175, 193
MroXI GAANNNNTTC 1 cut(s) 333
MscI TGGCCA 1 cut(s) 1184
MseI TTAA 1 cut(s) 1032
MslI CAYNNNNRTG 1 cut(s) 455
Msp20I TGGCCA 1 cut(s) 1184
MspA1I CMGCKG 2 cut(s) 638, 1112
MspI CCGG 4 cut(s) 176, 194, 1088, 1203
MspR9I CCNGG 2 cut(s) 878, 1089
MunI CAATTG 4 cut(s) 170, 303, 321, 698
MvaI CCWGG 1 cut(s) 878
MvnI CGCG 3 cut(s) 20, 65, 150
MwoI GCNNNNNNNGC 4 cut(s) 62, 172, 413, 743
NaeI GCCGGC 2 cut(s) 177, 195
NciI CCSGG 1 cut(s) 1089
NcoI CCATGG 1 cut(s) 228
NdeII GATC 5 cut(s) 105, 534, 778, 826, 844
NgoMIV GCCGGC 2 cut(s) 175, 193
NlaIII CATG 7 cut(s) 232, 473, 744, 779, 806, 1004, 1163
NlaIV GGNNCC 1 cut(s) 772
OliI CACNNNNGTG 1 cut(s) 455
PaeR7I CTCGAG 2 cut(s) 269, 1040
PagI TCATGA 1 cut(s) 1000
PaqCI CACCTGC 1 cut(s) 520
PceI AGGCCT 1 cut(s) 876
PciSI GCTCTTC 1 cut(s) 558
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PdiI GCCGGC 2 cut(s) 177, 195
PdmI GAANNNNTTC 1 cut(s) 333
PfeI GAWTC 4 cut(s) 115, 655, 790, 988
PflMI CCANNNNNTGG 1 cut(s) 1115
PleI GAGTC 1 cut(s) 991
PpsI GAGTC 1 cut(s) 991
PsiI TTATAA 1 cut(s) 588
Psp6I CCWGG 1 cut(s) 876
PspGI CCWGG 1 cut(s) 876
PspN4I GGNNCC 1 cut(s) 772
PspPI GGNCC 3 cut(s) 31, 686, 1139
PspXI VCTCGAGB 1 cut(s) 269
PstI CTGCAG 1 cut(s) 267
PvuII CAGCTG 2 cut(s) 638, 1112
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
RseI CAYNNNNRTG 1 cut(s) 455
SapI GCTCTTC 1 cut(s) 558
SaqAI TTAA 1 cut(s) 1032
Sau3AI GATC 5 cut(s) 105, 534, 778, 826, 844
Sau96I GGNCC 3 cut(s) 31, 686, 1139
SchI GAGTC 1 cut(s) 991
ScrFI CCNGG 2 cut(s) 878, 1089
SduI GDGCHC 4 cut(s) 219, 260, 418, 923
SfaNI GCATC 3 cut(s) 606, 661, 952
SfcI CTRYAG 3 cut(s) 263, 663, 992
Sfr274I CTCGAG 2 cut(s) 269, 1040
SgrAI CRCCGGYG 1 cut(s) 193
SinI GGWCC 3 cut(s) 31, 686, 1139
SlaI CTCGAG 2 cut(s) 269, 1040
SmiMI CAYNNNNRTG 1 cut(s) 455
SmlI CTYRAG 4 cut(s) 269, 1040, 1166, 1174
SmoI CTYRAG 4 cut(s) 269, 1040, 1166, 1174
SseBI AGGCCT 1 cut(s) 876
SsiI CCGC 9 cut(s) 26, 34, 37, 56, 65, 76, 79, 148, 164
SspMI CTAG 1 cut(s) 212
StuI AGGCCT 1 cut(s) 876
StyD4I CCNGG 2 cut(s) 876, 1087
StyI CCWWGG 2 cut(s) 228, 1185
TaaI ACNGT 4 cut(s) 225, 862, 1070, 1105
TaiI ACGT 1 cut(s) 443
TaqI TCGA 5 cut(s) 270, 402, 669, 953, 1041
TauI GCSGC 5 cut(s) 39, 79, 82, 150, 166
TfiI GAWTC 4 cut(s) 115, 655, 790, 988
Tru1I TTAA 1 cut(s) 1032
Tru9I TTAA 1 cut(s) 1032
TseI GCWGC 5 cut(s) 166, 265, 312, 407, 737
TspDTI ATGAA 3 cut(s) 377, 389, 1089
Van91I CCANNNNNTGG 1 cut(s) 1115
VpaK11BI GGWCC 3 cut(s) 31, 686, 1139
XapI RAATTY 2 cut(s) 913, 1014
XhoI CTCGAG 2 cut(s) 269, 1040
XmnI GAANNNNTTC 1 cut(s) 333
XspI CTAG 1 cut(s) 212
ZraI GACGTC 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.