Prupe.6G315900_v2.0.a1

Belongs to the importin alpha family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
28142528 .. 28147000
4473 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G315900.1

Sequence Viewer

Length: 1593 bp
ATGTCGTTGAGGCCGAACGCGAGGGCGGAGGTCCGCCGTAACAGGTATAAGGTGGCCGTGGACGCGGAGGAGGGTCGTCGGCGGAGGGAGGACAACATGGTGGAGATCAGGAAGAATCGCAGAGAAGAAAGCCTCCAGAAGAAACGTCGCGAGGGCCTTCAACCTCCGCAATTGTCCTCTAATCTTCACTCCTCCGGCCTAGAGAAGAAGCTAGAGCATCTACCATCTATGGTTGCTGGTGTTTGGAGTGATGAGAGCAGTCTGCAGCTTGAGGCAACTACTCAATTTAGGAAGTTGCTTTCAATTGAACGTAGCCCTCCGATTGAGGAAGTCATACAATCGGGTGTTGTTCCTCGCTTTGTTGAGTTTCTAATGAGGGAGGATTTTCCACAACTTCAGTTTGAGGCAGCTTGGGCTCTGACAAACATTGCTTCTGGGACATCTGAGAACACTAAGGTGGTGATTGATCATGGAGCTGTTCCAATATTTGTGAAACTGCTTAGTTCTCCAAGTGATGATGTCCGTGAGCAGGCTGTCTGGGCATTGGGAAATGTTGCTGGTGATTCCCCTAGATGCCGTGATCTTGTACTCGGCAATGGGGCTTTGATTCCATTACTTTCACAGCTGAATGAGCATGCAAAGCTCTCTATGCTGAGAAACGCTACTTGGACACTCTCAAACTTTTGCAGGGGCAAACCACAGCCTCCATTTGACCAGGTTAAGCCTGCCCTGCCAGCTCTTGCACGTTTGATTCATTCAAATGATGAAGAAGTATTGACCGATGCCTGCTGGGCTCTGTCTTATCTTTCTGATGGTACAAATGACAAAATCCAAGCTGTTATTGAATCTGGAGTATGCCCCAGGCTTGTTGAGCTTTTACTTCATCCATCTCCTTCAGTACTCATTCCTGCCCTCCGCACAGTTGGAAATATTGTTACTGGAGATGATATGCAAACTCAGGTTATCATCCAACATCAAGCTCTTCCTTGCCTGCTGACCCTTTTGACTAATAATTATAAAAAGAGCATCAAGAAGGAAGCTTGCTGGACTATTTCAAATATCACAGCCGGAAACAAGGATCAGATTAAGGCTGTAATTGATGCTGGTATAATCGGTCCTCTTGTTAGTCTGCTTCAAGGTGCTGAGTTTGATATAAAGAAAGAGGCTGCTTGGGCAATCTCGAATGCTACATCTGGTGGTTCTCATGAGCAGATAAAGATCCTAGTAGATCAAGGGTGTATCAAGCCATTGTGTGATCTTCTTATCTGCCCCGATCCTAGAATTGTTACGGTTTGCTTAGAAGGCCTGGAGAACATATTGAAGGTTGGAGAAGCTGAGAAGAACTTGGGCACTACTGGAGGTGTAAATCTCTATGCTCAGGCGATTGATGATGCAGAAGGGTTAGAGAAAATTGAGAATCTACAGAGTCATGACAACACTGAGATTTATGAGAAAGCAGTAAAGATTCTTGAGACATATTGGGTGGAGGATGAAGATGAAACAATGCCACCAGGCGATGCTTCTCAAACTGGGTTCAACTTTGGAGGGAATGGCATGCCAACTGTCCCGTCCGGCGGATTCAACTTCAGCTAG

Protein Analysis

531

Amino Acids

58.27

Weight (kDa)

5.25

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1017
AccII CGCG 3 cut(s) 20, 65, 150
AciI CCGC 7 cut(s) 26, 34, 65, 82, 167, 916, 1575
AclWI GGATC 3 cut(s) 1086, 1213, 1268
AcoI YGGCCR 1 cut(s) 54
AcuI CTGAAG 3 cut(s) 380, 879, 1570
AfaI GTAC 3 cut(s) 588, 817, 900
AfiI CCNNNNNNNGG 2 cut(s) 529, 1574
AjnI CCWGG 4 cut(s) 714, 860, 1305, 1510
AjuI GAANNNNNNNTTGG 2 cut(s) 649, 681
AleI CACNNNNGTG 1 cut(s) 455
Alw26I GTCTC 1 cut(s) 1466
AlwI GGATC 3 cut(s) 1086, 1213, 1268
AoxI GGCC 5 cut(s) 11, 54, 154, 196, 1303
ApeKI GCWGC 3 cut(s) 265, 407, 1166
AspS9I GGNCC 3 cut(s) 31, 154, 1115
AsuHPI GGTGA 2 cut(s) 472, 572
AvaII GGWCC 2 cut(s) 31, 1115
BaeGI GKGCMC 1 cut(s) 1352
BanII GRGCYC 2 cut(s) 418, 796
BbvI GCAGC 3 cut(s) 277, 419, 1153
BccI CCATC 3 cut(s) 232, 806, 895
BceAI ACGGC 3 cut(s) 21, 41, 561
BciT130I CCWGG 4 cut(s) 716, 862, 1307, 1512
BclI TGATCA 1 cut(s) 466
BcoDI GTCTC 1 cut(s) 1466
BfaI CTAG 6 cut(s) 200, 212, 570, 1223, 1278, 1591
BfmI CTRYAG 2 cut(s) 263, 1421
BglI GCCNNNNNGGC 1 cut(s) 791
BisI GCNGC 3 cut(s) 266, 408, 1167
BlsI GCNGC 3 cut(s) 267, 409, 1168
BmcAI AGTACT 1 cut(s) 900
Bme1390I CCNGG 4 cut(s) 716, 862, 1307, 1512
Bme18I GGWCC 2 cut(s) 31, 1115
BmgT120I GGNCC 3 cut(s) 31, 154, 1115
BmrFI CCNGG 4 cut(s) 716, 862, 1307, 1512
BmrI ACTGGG 1 cut(s) 1539
BmsI GCATC 7 cut(s) 226, 563, 772, 1035, 1090, 1381, 1507
BmuI ACTGGG 1 cut(s) 1539
BpmI CTGGAG 5 cut(s) 119, 870, 960, 1328, 1377
Bpu10I CCTNAGC 1 cut(s) 1377
BpuEI CTTGAG 2 cut(s) 290, 1490
BsaBI GATNNNNATC 1 cut(s) 1217
BsaJI CCNNGG 2 cut(s) 57, 860
Bsc4I CCNNNNNNNGG 2 cut(s) 529, 1574
Bse1I ACTGG 3 cut(s) 943, 1360, 1534
Bse3DI GCAATG 2 cut(s) 426, 601
Bse8I GATNNNNATC 1 cut(s) 1217
BseBI CCWGG 4 cut(s) 716, 862, 1307, 1512
BseDI CCNNGG 2 cut(s) 57, 860
BseGI GGATG 3 cut(s) 883, 966, 1495
BseJI GATNNNNATC 1 cut(s) 1217
BseLI CCNNNNNNNGG 2 cut(s) 529, 1574
BseMI GCAATG 2 cut(s) 426, 601
BseMII CTCAG 7 cut(s) 435, 644, 971, 1134, 1326, 1391, 1431
BseNI ACTGG 3 cut(s) 943, 1360, 1534
BseRI GAGGAG 2 cut(s) 83, 181
BseSI GKGCMC 1 cut(s) 1352
BseXI GCAGC 3 cut(s) 277, 419, 1153
BseYI CCCAGC 1 cut(s) 789
Bsh1236I CGCG 3 cut(s) 20, 65, 150
BshFI GGCC 5 cut(s) 13, 56, 156, 198, 1305
BsiSI CCGG 3 cut(s) 195, 1068, 1572
BslFI GGGAC 2 cut(s) 451, 1550
BslI CCNNNNNNNGG 2 cut(s) 529, 1574
BsmAI GTCTC 1 cut(s) 1466
BsmFI GGGAC 2 cut(s) 451, 1550
BsmI GAATGC 1 cut(s) 1189
BsnI GGCC 5 cut(s) 13, 56, 156, 198, 1305
Bsp1286I GDGCHC 3 cut(s) 418, 796, 1352
Bsp143I GATC 8 cut(s) 105, 466, 580, 1078, 1218, 1228, 1255, 1273
Bsp68I TCGCGA 1 cut(s) 150
BspACI CCGC 7 cut(s) 26, 34, 65, 82, 167, 916, 1575
BspANI GGCC 5 cut(s) 13, 56, 156, 198, 1305
BspCNI CTCAG 7 cut(s) 436, 645, 970, 1135, 1327, 1390, 1432
BspFNI CGCG 3 cut(s) 20, 65, 150
BspHI TCATGA 2 cut(s) 1204, 1429
BspMAI CTGCAG 1 cut(s) 267
BspPI GGATC 3 cut(s) 1086, 1213, 1268
BspQI GCTCTTC 1 cut(s) 987
BsrDI GCAATG 2 cut(s) 426, 601
BsrI ACTGG 3 cut(s) 943, 1360, 1534
BssECI CCNNGG 2 cut(s) 57, 860
BssMI GATC 8 cut(s) 105, 466, 580, 1078, 1218, 1228, 1255, 1273
Bst2UI CCWGG 4 cut(s) 716, 862, 1307, 1512
Bst4CI ACNGT 3 cut(s) 922, 1291, 1564
Bst6I CTCTTC 1 cut(s) 987
BstC8I GCNNGC 8 cut(s) 531, 636, 726, 735, 787, 992, 1042, 1556
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 3 cut(s) 883, 966, 1495
BstFNI CGCG 3 cut(s) 20, 65, 150
BstKTI GATC 8 cut(s) 108, 469, 583, 1081, 1221, 1231, 1258, 1276
BstMAI GTCTC 1 cut(s) 1466
BstMBI GATC 8 cut(s) 105, 466, 580, 1078, 1218, 1228, 1255, 1273
BstNI CCWGG 4 cut(s) 716, 862, 1307, 1512
BstNSI RCATGY 2 cut(s) 638, 1558
BstSCI CCNGG 4 cut(s) 714, 860, 1305, 1510
BstSFI CTRYAG 2 cut(s) 263, 1421
BstSLI GKGCMC 1 cut(s) 1352
BstUI CGCG 3 cut(s) 20, 65, 150
BstV1I GCAGC 3 cut(s) 277, 419, 1153
BstX2I RGATCY 1 cut(s) 1218
BstYI RGATCY 1 cut(s) 1218
BsuRI GGCC 5 cut(s) 13, 56, 156, 198, 1305
BtgI CCRYGG 1 cut(s) 57
BtgZI GCGATG 1 cut(s) 1530
BtsCI GGATG 3 cut(s) 883, 966, 1495
BtsIMutI CAGTG 1 cut(s) 1437
BtuMI TCGCGA 1 cut(s) 150
Cac8I GCNNGC 8 cut(s) 531, 636, 726, 735, 787, 992, 1042, 1556
CciI TCATGA 2 cut(s) 1204, 1429
Cfr13I GGNCC 3 cut(s) 31, 154, 1115
CseI GACGC 1 cut(s) 71
CsiI ACCWGGT 1 cut(s) 714
Csp6I GTAC 3 cut(s) 587, 816, 899
CviAII CATG 6 cut(s) 97, 470, 635, 1205, 1430, 1555
CviQI GTAC 3 cut(s) 587, 816, 899
DpnI GATC 8 cut(s) 107, 468, 582, 1080, 1220, 1230, 1257, 1275
DpnII GATC 8 cut(s) 105, 466, 580, 1078, 1218, 1228, 1255, 1273
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 987
EarI CTCTTC 1 cut(s) 987
EciI GGCGGA 4 cut(s) 23, 41, 97, 1590
Eco147I AGGCCT 1 cut(s) 1305
Eco24I GRGCYC 2 cut(s) 418, 796
Eco47I GGWCC 2 cut(s) 31, 1115
Eco57I CTGAAG 3 cut(s) 380, 879, 1570
EcoO109I RGGNCCY 1 cut(s) 154
EcoRII CCWGG 4 cut(s) 714, 860, 1305, 1510
EcoT38I GRGCYC 2 cut(s) 418, 796
FaeI CATG 6 cut(s) 100, 473, 638, 1208, 1433, 1558
FaqI GGGAC 2 cut(s) 451, 1550
FatI CATG 6 cut(s) 96, 469, 634, 1204, 1429, 1554
FbaI TGATCA 1 cut(s) 466
Fnu4HI GCNGC 3 cut(s) 266, 408, 1167
FokI GGATG 3 cut(s) 870, 953, 1502
FriOI GRGCYC 2 cut(s) 418, 796
Fsp4HI GCNGC 3 cut(s) 266, 408, 1167
FspBI CTAG 6 cut(s) 200, 212, 570, 1223, 1278, 1591
GluI GCNGC 3 cut(s) 266, 408, 1167
GsaI CCCAGC 1 cut(s) 793
GsuI CTGGAG 5 cut(s) 119, 870, 960, 1328, 1377
HaeIII GGCC 5 cut(s) 13, 56, 156, 198, 1305
HapII CCGG 3 cut(s) 195, 1068, 1572
HgaI GACGC 1 cut(s) 71
Hin1II CATG 6 cut(s) 100, 473, 638, 1208, 1433, 1558
HindIII AAGCTT 1 cut(s) 1038
HinfI GANTC 9 cut(s) 115, 563, 607, 751, 845, 1417, 1426, 1465, 1578
HpaII CCGG 3 cut(s) 195, 1068, 1572
HphI GGTGA 2 cut(s) 472, 572
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 5 cut(s) 321, 420, 445, 811, 1083
Hpy188III TCNNGA 9 cut(s) 109, 136, 149, 849, 1030, 1180, 1205, 1430, 1469
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 2 cut(s) 81, 150
HpyAV CCTTC 6 cut(s) 167, 903, 1027, 1295, 1315, 1391
HpyCH4III ACNGT 3 cut(s) 922, 1291, 1564
HpyCH4IV ACGT 3 cut(s) 145, 310, 745
HpyCH4V TGCA 6 cut(s) 265, 638, 687, 743, 952, 1394
HpySE526I ACGT 3 cut(s) 145, 310, 745
Hsp92II CATG 6 cut(s) 100, 473, 638, 1208, 1433, 1558
Ksp22I TGATCA 1 cut(s) 466
Kzo9I GATC 8 cut(s) 105, 466, 580, 1078, 1218, 1228, 1255, 1273
LguI GCTCTTC 1 cut(s) 987
LmnI GCTCC 1 cut(s) 473
Lsp1109I GCAGC 3 cut(s) 277, 419, 1153
LweI GCATC 7 cut(s) 226, 563, 772, 1035, 1090, 1381, 1507
MabI ACCWGGT 1 cut(s) 714
MaeI CTAG 6 cut(s) 200, 212, 570, 1223, 1278, 1591
MaeII ACGT 3 cut(s) 145, 310, 745
MaeIII GTNAC 3 cut(s) 38, 934, 1285
MalI GATC 8 cut(s) 107, 468, 582, 1080, 1220, 1230, 1257, 1275
MboI GATC 8 cut(s) 105, 466, 580, 1078, 1218, 1228, 1255, 1273
MfeI CAATTG 2 cut(s) 170, 303
MflI RGATCY 1 cut(s) 1218
MhlI GDGCHC 3 cut(s) 418, 796, 1352
MluCI AATT 7 cut(s) 170, 284, 303, 1012, 1095, 1281, 1410
MlyI GAGTC 1 cut(s) 1435
MmeI TCCRAC 3 cut(s) 904, 994, 1306
MseI TTAA 2 cut(s) 720, 1086
MslI CAYNNNNRTG 2 cut(s) 455, 759
MspA1I CMGCKG 1 cut(s) 625
MspI CCGG 3 cut(s) 195, 1068, 1572
MspR9I CCNGG 4 cut(s) 716, 862, 1307, 1512
MunI CAATTG 2 cut(s) 170, 303
Mva1269I GAATGC 1 cut(s) 1189
MvaI CCWGG 4 cut(s) 716, 862, 1307, 1512
MvnI CGCG 3 cut(s) 20, 65, 150
NdeII GATC 8 cut(s) 105, 466, 580, 1078, 1218, 1228, 1255, 1273
NlaIII CATG 6 cut(s) 100, 473, 638, 1208, 1433, 1558
NmeAIII GCCGAG 1 cut(s) 570
NruI TCGCGA 1 cut(s) 150
NspI RCATGY 2 cut(s) 638, 1558
OliI CACNNNNGTG 1 cut(s) 455
PaeI GCATGC 2 cut(s) 638, 1558
PagI TCATGA 2 cut(s) 1204, 1429
PceI AGGCCT 1 cut(s) 1305
PciSI GCTCTTC 1 cut(s) 987
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PctI GAATGC 1 cut(s) 1189
PfeI GAWTC 8 cut(s) 115, 563, 607, 751, 845, 1417, 1465, 1578
PkrI GCNGC 3 cut(s) 267, 409, 1168
PleI GAGTC 1 cut(s) 1434
PpsI GAGTC 1 cut(s) 1434
PsiI TTATAA 1 cut(s) 1017
Psp6I CCWGG 4 cut(s) 714, 860, 1305, 1510
PspFI CCCAGC 1 cut(s) 789
PspGI CCWGG 4 cut(s) 714, 860, 1305, 1510
PspPI GGNCC 3 cut(s) 31, 154, 1115
PstI CTGCAG 1 cut(s) 267
PsuI RGATCY 1 cut(s) 1218
PvuII CAGCTG 1 cut(s) 625
RruI TCGCGA 1 cut(s) 150
RsaI GTAC 3 cut(s) 588, 817, 900
RsaNI GTAC 3 cut(s) 587, 816, 899
RseI CAYNNNNRTG 2 cut(s) 455, 759
SapI GCTCTTC 1 cut(s) 987
SaqAI TTAA 2 cut(s) 720, 1086
SatI GCNGC 3 cut(s) 266, 408, 1167
Sau3AI GATC 8 cut(s) 105, 466, 580, 1078, 1218, 1228, 1255, 1273
Sau96I GGNCC 3 cut(s) 31, 154, 1115
ScaI AGTACT 1 cut(s) 900
SchI GAGTC 1 cut(s) 1435
ScrFI CCNGG 4 cut(s) 716, 862, 1307, 1512
SduI GDGCHC 3 cut(s) 418, 796, 1352
SexAI ACCWGGT 1 cut(s) 714
SfaNI GCATC 7 cut(s) 226, 563, 772, 1035, 1090, 1381, 1507
SfcI CTRYAG 2 cut(s) 263, 1421
SinI GGWCC 2 cut(s) 31, 1115
SmiMI CAYNNNNRTG 2 cut(s) 455, 759
SmlI CTYRAG 2 cut(s) 269, 1469
SmoI CTYRAG 2 cut(s) 269, 1469
SphI GCATGC 2 cut(s) 638, 1558
Sse9I AATT 7 cut(s) 170, 284, 303, 1012, 1095, 1281, 1410
SseBI AGGCCT 1 cut(s) 1305
SsiI CCGC 7 cut(s) 26, 34, 65, 82, 167, 916, 1575
SspI AATATT 2 cut(s) 486, 931
SspMI CTAG 6 cut(s) 200, 212, 570, 1223, 1278, 1591
StuI AGGCCT 1 cut(s) 1305
StyD4I CCNGG 4 cut(s) 714, 860, 1305, 1510
TaaI ACNGT 3 cut(s) 922, 1291, 1564
TaiI ACGT 3 cut(s) 148, 313, 748
TaqI TCGA 1 cut(s) 1181
TaqII GACCGA 2 cut(s) 794, 1103
TasI AATT 7 cut(s) 170, 284, 303, 1012, 1095, 1281, 1410
TatI WGTACW 2 cut(s) 586, 898
TfiI GAWTC 8 cut(s) 115, 563, 607, 751, 845, 1417, 1465, 1578
Tru1I TTAA 2 cut(s) 720, 1086
Tru9I TTAA 2 cut(s) 720, 1086
TscAI CASTG 1 cut(s) 1444
TseI GCWGC 3 cut(s) 265, 407, 1166
TspDTI ATGAA 5 cut(s) 743, 780, 872, 1506, 1512
TspGWI ACGGA 1 cut(s) 512
TspRI CASTG 1 cut(s) 1444
VpaK11BI GGWCC 2 cut(s) 31, 1115
XceI RCATGY 2 cut(s) 638, 1558
XspI CTAG 6 cut(s) 200, 212, 570, 1223, 1278, 1591
ZrmI AGTACT 1 cut(s) 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.