Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0005982

Physical Location & Seq

Genomic Coordinates Reverse (-)

6085718 .. 6089630

Gene Structure 3913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG077700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1605 bp

ATGTCGTTGAGGCCGAACGCGAGGGCGGAGGTCCGCCGCAACAGGTACAAGGTGGCGGTGGACGCGGAGGAGGGGCGGCGGCGCAGGGAGGACAATATGGTGGAGATCAGGAAGAATCGTAGAGAAGAGAGCCTCCAGAAGAAGCGCCGCGAGGGGTTTCAGCCGCAGCAATTGCCGGCTAATCTTCAGTCGCCGGCGCTGGAGAAGAAGCTAGAGCACTTACCGTCCATGGTTGCAGGAGTTTGGAGTGAAGAGGGCACTCTGCAGCTCGAGGCAACTACTCAGTTTAGGAAGTTGCTATCAATTGAGCGCAGCCCTCCAATTGAGGAAGTTATTCAGTCTGGTGTTGTTCCTCGCTTTGTGGAGTTTCTAATGAAGGAGAACTTTCATCAACTTCAGTTCGAGGCAGCTTGGGCTCTCACAAACATTGCGTCTGGGACGTCTGAGAACACAAAGGTGGTTATTGAACATGGTGCTGTTCCTATCTTTGTCAAATTACTGAGTTCTCCAAGTGATGATGTTCGTGAACAGGCTGTTTGGGCGTTGGGGAATGTTGCTGGTGATTCCCCAAAATGCCGGGATCTGGTACTTGGCAGTGGAGCTCTGATTCCATTGTTATCGCAGTTGAATGAGCATGCAAAGCTCTCCATGTTGAGAAATGCTACTTGGACATTGTCAAACTTTTGCAGGGGCAAGCCACAGCCTCCTTTTGATGAGGTTAAGCCAGCACTTCCAGCTCTGGCTCGTTTGATTCACTCAAATGATGAAGAAGTCTTGACTGATGCGTGTTGGGCTCTTTCATACCTTTCTGATGGTACTAATGACAAAATTCAAGCCGTTATTGAGTCTGGAGTATGCCCCAGGCTTGTTGAACTTCTGCTTCATCCATCTCCATCCGTACTGATCCCTGCTCTCCGCACAGTCGGAAATATTGTTACTGGTGATGATATGCAAACTCAGGTGATCATCCAACATCAAGCTCTTCCTTGTCTGCTGACCCTTCTGACCAACAATTATAAAAAGAGCATCAAGAAGGAAGCTTGCTGGACAATTTCAAATATCACAGCTGGAAACAAAGAGCAGATTCAGGCTGTAGTCGATGCTAATATAATTGGTCCACTTATTCAACTGCTTTCAACTGCTGAGTTTGATATAAAGAAAGAAGCTGCATGGGCAGTATCAAATGCGACATCTGGTGGTTCTCATGATCAAATAAAAATTCTTGTAAATCATGGGTGTATCAAGCCATTGTGTGATCTTCTTATCTGCCCCGATCCAAGAATTGTTACAGTTTGTTTAGAAGGCCTGGAGAACATCTTGAAGGTTGGAGAAGCTGAGAAGAATTTGGGCACAACAGGAGGTGTAAATCCCTATGCTCAGTCGATTGATGATGCAGAGGGGTTAGAAAAGATTGAGAATCTACAGACTCATGACAATACTGAAATTTATGAGAAGGCAGTTAAGCTTCTCGAGACATATTGGTTGGAGGACGATGACGGTGATGAAACAATGCCACCGGGTGATGTTCCAACTGTTCCAGCTGGTGGTTTCAACTTCGGAGGAAATGGTCCAAGTGTTCCGTCTGGTGGATTCAACTTCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0017038 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm Arm_3 IBB

Protein Analysis

534

Amino Acids

58.69

Weight (kDa)

5.25

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBB	PF01749	12 - 94	7.8e-22	Importin beta binding domain
Arm	PF00514	105 - 145	8.9e-10	Armadillo/beta-catenin-like repeat
ARM_ARMC5	PF24768	108 - 230	3.8e-06	ARMC5
HEAT_EZ	PF13513	131 - 185	1.1e-09	HEAT-like repeat
Arm	PF00514	147 - 186	1.9e-13	Armadillo/beta-catenin-like repeat
HEAT_2	PF13646	161 - 267	1.5e-06	HEAT repeats
Arm	PF00514	189 - 230	3.9e-08	Armadillo/beta-catenin-like repeat
Arm	PF00514	243 - 271	4.1e-08	Armadillo/beta-catenin-like repeat
Arm	PF00514	274 - 312	8.9e-10	Armadillo/beta-catenin-like repeat
ARM_ARMC5	PF24768	278 - 470	7.3e-11	ARMC5
Arm	PF00514	316 - 356	4.3e-10	Armadillo/beta-catenin-like repeat
Arm	PF00514	358 - 397	6.5e-12	Armadillo/beta-catenin-like repeat
Arm	PF00514	401 - 440	3.3e-07	Armadillo/beta-catenin-like repeat
Arm_3	PF16186	456 - 506	2.2e-20	Atypical Arm repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02150 AT4G02150
fragaria_vesca	FvH4_6g07130
malus_domestica	MD04G1196000.v1.1 MD07G1209900.v1.1 MD12G1208700.v1.1
prunus_persica	Prupe.6G315900_v2.0.a1 Prupe.6G315900_v2.0.a1 Prupe.6G315900_v2.0.a1
pyrus_communis	pycom04g17330 pycom12g19610
rosa_chinensis	RchiOBHm_Chr3g0456721 RchiOBHm_Chr7g0191281 RchiOBHm_Chr7g0191291
rosa_laevigata	RLG00000025281 RLG00000027861
rosa_multiflora	Rmu_co8463855.1_g000001 Rmu_sc0000133.1_g000026 Rmu_sc0037422.1_g000002
rosa_roxburghii	Rroxscaffold_11G00450370 Rroxscaffold_6G00422510
rosa_rugosa	Rorug03G0015300
rosa_samantha	Rh3AG075800 Rh3BG077700 Rh3CG077500 Rh3DG079400
rosa_wichuraiana	Rw3G006500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1017
AatII	GACGTC	1 cut(s)	443
AccB7I	CCANNNNNTGG	1 cut(s)	1544
AccII	CGCG	3 cut(s)	20, 65, 150
AclWI	GGATC	3 cut(s)	588, 898, 1268
AcsI	RAATTY	4 cut(s)	828, 1218, 1342, 1443
AcuI	CTGAAG	3 cut(s)	170, 380, 1582
AcyI	GRCGYC	1 cut(s)	440
AdeI	CACNNNGTG	1 cut(s)	1520
AfaI	GTAC	4 cut(s)	47, 588, 817, 900
AfiI	CCNNNNNNNGG	3 cut(s)	583, 1544, 1586
AjnI	CCWGG	2 cut(s)	860, 1305
AjuI	GAANNNNNNNTTGG	2 cut(s)	649, 681
AleI	CACNNNNGTG	1 cut(s)	455
Alw21I	GWGCWC	2 cut(s)	219, 604
Alw26I	GTCTC	1 cut(s)	1466
AlwI	GGATC	3 cut(s)	588, 898, 1268
Ama87I	CYCGRG	2 cut(s)	269, 1469
AoxI	GGCC	2 cut(s)	11, 1303
ApeKI	GCWGC	5 cut(s)	166, 265, 312, 407, 1166
ApoI	RAATTY	4 cut(s)	828, 1218, 1342, 1443
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
Asp700I	GAANNNNTTC	1 cut(s)	333
AspLEI	GCGC	4 cut(s)	84, 147, 199, 312
AspS9I	GGNCC	3 cut(s)	31, 1115, 1568
AsuC2I	CCSGG	2 cut(s)	578, 1518
AsuHPI	GGTGA	5 cut(s)	572, 953, 973, 1511, 1532
AvaI	CYCGRG	2 cut(s)	269, 1469
AvaII	GGWCC	3 cut(s)	31, 1115, 1568
BaeGI	GKGCMC	2 cut(s)	260, 1352
BanII	GRGCYC	3 cut(s)	418, 604, 796
Bbv12I	GWGCWC	2 cut(s)	219, 604
BbvI	GCAGC	5 cut(s)	178, 277, 324, 419, 1153
BccI	CCATC	3 cut(s)	806, 895, 901
BceAI	ACGGC	1 cut(s)	821
BciT130I	CCWGG	2 cut(s)	862, 1307
BclI	TGATCA	2 cut(s)	963, 1207
BcnI	CCSGG	2 cut(s)	578, 1518
BcoDI	GTCTC	1 cut(s)	1466
BfaI	CTAG	2 cut(s)	212, 1603
BfmI	CTRYAG	3 cut(s)	263, 1092, 1421
BfoI	RGCGCY	2 cut(s)	148, 200
Bme1390I	CCNGG	4 cut(s)	578, 862, 1307, 1518
Bme18I	GGWCC	3 cut(s)	31, 1115, 1568
BmeT110I	CYCGRG	2 cut(s)	269, 1469
BmgT120I	GGNCC	3 cut(s)	31, 1115, 1568
BmrFI	CCNGG	4 cut(s)	578, 862, 1307, 1518
BmsI	GCATC	4 cut(s)	772, 1035, 1090, 1381
BpmI	CTGGAG	4 cut(s)	119, 221, 870, 1328
BpuMI	CCSGG	2 cut(s)	578, 1518
BsaHI	GRCGYC	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	228, 860
Bsc4I	CCNNNNNNNGG	3 cut(s)	583, 1544, 1586
Bse118I	RCCGGY	2 cut(s)	175, 193
Bse1I	ACTGG	1 cut(s)	943
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	2 cut(s)	862, 1307
BseDI	CCNNGG	2 cut(s)	228, 860
BseGI	GGATG	3 cut(s)	883, 893, 966
BseLI	CCNNNNNNNGG	3 cut(s)	583, 1544, 1586
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	7 cut(s)	296, 435, 491, 971, 1134, 1326, 1391
BseNI	ACTGG	1 cut(s)	943
BseRI	GAGGAG	1 cut(s)	83
BseSI	GKGCMC	2 cut(s)	260, 1352
BseXI	GCAGC	5 cut(s)	178, 277, 324, 419, 1153
Bsh1236I	CGCG	3 cut(s)	20, 65, 150
BshFI	GGCC	2 cut(s)	13, 1305
BsiHKAI	GWGCWC	2 cut(s)	219, 604
BsiHKCI	CYCGRG	2 cut(s)	269, 1469
BsiSI	CCGG	4 cut(s)	176, 194, 577, 1517
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	3 cut(s)	583, 1544, 1586
BsmAI	GTCTC	1 cut(s)	1466
BsmFI	GGGAC	1 cut(s)	451
BsnI	GGCC	2 cut(s)	13, 1305
BsoBI	CYCGRG	2 cut(s)	269, 1469
Bsp1286I	GDGCHC	6 cut(s)	219, 260, 418, 604, 796, 1352
Bsp143I	GATC	7 cut(s)	105, 580, 903, 963, 1207, 1255, 1273
Bsp19I	CCATGG	1 cut(s)	228
BspANI	GGCC	2 cut(s)	13, 1305
BspCNI	CTCAG	7 cut(s)	295, 436, 492, 970, 1135, 1327, 1390
BspFNI	CGCG	3 cut(s)	20, 65, 150
BspHI	TCATGA	2 cut(s)	1204, 1429
BspMAI	CTGCAG	1 cut(s)	267
BspPI	GGATC	3 cut(s)	588, 898, 1268
BspQI	GCTCTTC	1 cut(s)	987
BsrDI	GCAATG	1 cut(s)	426
BsrFI	RCCGGY	2 cut(s)	175, 193
BsrI	ACTGG	1 cut(s)	943
BssAI	RCCGGY	2 cut(s)	175, 193
BssECI	CCNNGG	2 cut(s)	228, 860
BssMI	GATC	7 cut(s)	105, 580, 903, 963, 1207, 1255, 1273
BssNI	GRCGYC	1 cut(s)	440
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	2 cut(s)	862, 1307
Bst4CI	ACNGT	5 cut(s)	225, 922, 1291, 1499, 1534
Bst6I	CTCTTC	3 cut(s)	120, 246, 987
BstACI	GRCGYC	1 cut(s)	440
BstAPI	GCANNNNNTGC	1 cut(s)	172
BstC8I	GCNNGC	6 cut(s)	177, 195, 636, 695, 726, 1042
BstDEI	CTNAG	7 cut(s)	282, 444, 500, 957, 1143, 1335, 1377
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	3 cut(s)	883, 893, 966
BstFNI	CGCG	3 cut(s)	20, 65, 150
BstH2I	RGCGCY	2 cut(s)	148, 200
BstHHI	GCGC	4 cut(s)	84, 147, 199, 312
BstKTI	GATC	7 cut(s)	108, 583, 906, 966, 1210, 1258, 1276
BstMAI	GTCTC	1 cut(s)	1466
BstMBI	GATC	7 cut(s)	105, 580, 903, 963, 1207, 1255, 1273
BstMWI	GCNNNNNNNGC	8 cut(s)	62, 172, 413, 539, 640, 734, 791, 1172
BstNI	CCWGG	2 cut(s)	862, 1307
BstNSI	RCATGY	1 cut(s)	638
BstSCI	CCNGG	4 cut(s)	576, 860, 1305, 1516
BstSFI	CTRYAG	3 cut(s)	263, 1092, 1421
BstSLI	GKGCMC	2 cut(s)	260, 1352
BstUI	CGCG	3 cut(s)	20, 65, 150
BstV1I	GCAGC	5 cut(s)	178, 277, 324, 419, 1153
BstX2I	RGATCY	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	580
BsuRI	GGCC	2 cut(s)	13, 1305
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	3 cut(s)	883, 893, 966
BtsI	GCAGTG	1 cut(s)	601
BtsIMutI	CAGTG	1 cut(s)	601
Cac8I	GCNNGC	6 cut(s)	177, 195, 636, 695, 726, 1042
CciI	TCATGA	2 cut(s)	1204, 1429
CfoI	GCGC	4 cut(s)	84, 147, 199, 312
Cfr10I	RCCGGY	2 cut(s)	175, 193
Cfr13I	GGNCC	3 cut(s)	31, 1115, 1568
CseI	GACGC	2 cut(s)	71, 420
Csp6I	GTAC	4 cut(s)	46, 587, 816, 899
CviAII	CATG	8 cut(s)	229, 470, 635, 649, 1170, 1205, 1232, 1430
CviQI	GTAC	4 cut(s)	46, 587, 816, 899
DdeI	CTNAG	7 cut(s)	282, 444, 500, 957, 1143, 1335, 1377
DpnI	GATC	7 cut(s)	107, 582, 905, 965, 1209, 1257, 1275
DpnII	GATC	7 cut(s)	105, 580, 903, 963, 1207, 1255, 1273
DraIII	CACNNNGTG	1 cut(s)	1520
Eam1104I	CTCTTC	3 cut(s)	120, 246, 987
EarI	CTCTTC	3 cut(s)	120, 246, 987
EciI	GGCGGA	2 cut(s)	23, 41
Ecl136II	GAGCTC	1 cut(s)	602
Eco130I	CCWWGG	1 cut(s)	228
Eco147I	AGGCCT	1 cut(s)	1305
Eco24I	GRGCYC	3 cut(s)	418, 604, 796
Eco47I	GGWCC	3 cut(s)	31, 1115, 1568
Eco53kI	GAGCTC	1 cut(s)	602
Eco57I	CTGAAG	3 cut(s)	170, 380, 1582
Eco88I	CYCGRG	2 cut(s)	269, 1469
EcoICRI	GAGCTC	1 cut(s)	602
EcoRII	CCWGG	2 cut(s)	860, 1305
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	3 cut(s)	418, 604, 796
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	8 cut(s)	232, 473, 638, 652, 1173, 1208, 1235, 1433
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	8 cut(s)	228, 469, 634, 648, 1169, 1204, 1231, 1429
FbaI	TGATCA	2 cut(s)	963, 1207
FokI	GGATG	3 cut(s)	870, 880, 953
FriOI	GRGCYC	3 cut(s)	418, 604, 796
FspBI	CTAG	2 cut(s)	212, 1603
GlaI	GCGC	4 cut(s)	83, 146, 198, 311
GsuI	CTGGAG	4 cut(s)	119, 221, 870, 1328
HaeII	RGCGCY	2 cut(s)	148, 200
HaeIII	GGCC	2 cut(s)	13, 1305
HapII	CCGG	4 cut(s)	176, 194, 577, 1517
HgaI	GACGC	2 cut(s)	71, 420
HhaI	GCGC	4 cut(s)	84, 147, 199, 312
Hin1I	GRCGYC	1 cut(s)	440
Hin1II	CATG	8 cut(s)	232, 473, 638, 652, 1173, 1208, 1235, 1433
Hin6I	GCGC	4 cut(s)	82, 145, 197, 310
HinP1I	GCGC	4 cut(s)	82, 145, 197, 310
HindIII	AAGCTT	2 cut(s)	1038, 1463
HinfI	GANTC	9 cut(s)	115, 563, 607, 751, 845, 1084, 1417, 1426, 1590
HpaII	CCGG	4 cut(s)	176, 194, 577, 1517
HphI	GGTGA	5 cut(s)	572, 953, 973, 1511, 1532
Hpy166II	GTNNAC	3 cut(s)	61, 527, 1118
Hpy188I	TCNGA	6 cut(s)	445, 606, 811, 926, 1005, 1559
Hpy8I	GTNNAC	3 cut(s)	61, 527, 1118
HpyAV	CCTTC	6 cut(s)	370, 1010, 1027, 1295, 1315, 1447
HpyCH4III	ACNGT	5 cut(s)	225, 922, 1291, 1499, 1534
HpyCH4IV	ACGT	1 cut(s)	440
HpyCH4V	TGCA	7 cut(s)	236, 265, 638, 687, 952, 1169, 1394
HpyF10VI	GCNNNNNNNGC	8 cut(s)	62, 172, 413, 539, 640, 734, 791, 1172
HpyF3I	CTNAG	7 cut(s)	282, 444, 500, 957, 1143, 1335, 1377
HpySE526I	ACGT	1 cut(s)	440
Hsp92I	GRCGYC	1 cut(s)	440
Hsp92II	CATG	8 cut(s)	232, 473, 638, 652, 1173, 1208, 1235, 1433
HspAI	GCGC	4 cut(s)	82, 145, 197, 310
KroI	GCCGGC	2 cut(s)	175, 193
KroNI	GCCGGC	2 cut(s)	177, 195
Ksp22I	TGATCA	2 cut(s)	963, 1207
Kzo9I	GATC	7 cut(s)	105, 580, 903, 963, 1207, 1255, 1273
LguI	GCTCTTC	1 cut(s)	987
LmnI	GCTCC	1 cut(s)	599
Lsp1109I	GCAGC	5 cut(s)	178, 277, 324, 419, 1153
LweI	GCATC	4 cut(s)	772, 1035, 1090, 1381
MaeI	CTAG	2 cut(s)	212, 1603
MaeII	ACGT	1 cut(s)	440
MaeIII	GTNAC	2 cut(s)	934, 1285
MalI	GATC	7 cut(s)	107, 582, 905, 965, 1209, 1257, 1275
MboI	GATC	7 cut(s)	105, 580, 903, 963, 1207, 1255, 1273
MfeI	CAATTG	3 cut(s)	170, 303, 321
MflI	RGATCY	1 cut(s)	580
MhlI	GDGCHC	6 cut(s)	219, 260, 418, 604, 796, 1352
MlyI	GAGTC	2 cut(s)	854, 1420
MmeI	TCCRAC	5 cut(s)	904, 994, 1306, 1464, 1553
MreI	CGCCGGCG	1 cut(s)	193
MroNI	GCCGGC	2 cut(s)	175, 193
MroXI	GAANNNNTTC	1 cut(s)	333
MseI	TTAA	2 cut(s)	720, 1461
MslI	CAYNNNNRTG	2 cut(s)	455, 759
MspA1I	CMGCKG	2 cut(s)	1067, 1541
MspI	CCGG	4 cut(s)	176, 194, 577, 1517
MspR9I	CCNGG	4 cut(s)	578, 862, 1307, 1518
MunI	CAATTG	3 cut(s)	170, 303, 321
MvaI	CCWGG	2 cut(s)	862, 1307
MvnI	CGCG	3 cut(s)	20, 65, 150
MwoI	GCNNNNNNNGC	8 cut(s)	62, 172, 413, 539, 640, 734, 791, 1172
NaeI	GCCGGC	2 cut(s)	177, 195
NciI	CCSGG	2 cut(s)	578, 1518
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	7 cut(s)	105, 580, 903, 963, 1207, 1255, 1273
NgoMIV	GCCGGC	2 cut(s)	175, 193
NlaIII	CATG	8 cut(s)	232, 473, 638, 652, 1173, 1208, 1235, 1433
NspI	RCATGY	1 cut(s)	638
OliI	CACNNNNGTG	1 cut(s)	455
PaeI	GCATGC	1 cut(s)	638
PaeR7I	CTCGAG	2 cut(s)	269, 1469
PagI	TCATGA	2 cut(s)	1204, 1429
PceI	AGGCCT	1 cut(s)	1305
PciSI	GCTCTTC	1 cut(s)	987
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PdiI	GCCGGC	2 cut(s)	177, 195
PdmI	GAANNNNTTC	1 cut(s)	333
PfeI	GAWTC	7 cut(s)	115, 563, 607, 751, 1084, 1417, 1590
PflFI	GACNNNGTC	1 cut(s)	673
PflMI	CCANNNNNTGG	1 cut(s)	1544
PleI	GAGTC	2 cut(s)	853, 1420
PpsI	GAGTC	2 cut(s)	853, 1420
PsiI	TTATAA	1 cut(s)	1017
Psp124BI	GAGCTC	1 cut(s)	604
Psp6I	CCWGG	2 cut(s)	860, 1305
PspGI	CCWGG	2 cut(s)	860, 1305
PspPI	GGNCC	3 cut(s)	31, 1115, 1568
PspXI	VCTCGAGB	1 cut(s)	269
PstI	CTGCAG	1 cut(s)	267
PsuI	RGATCY	1 cut(s)	580
PsyI	GACNNNGTC	1 cut(s)	673
PvuII	CAGCTG	2 cut(s)	1067, 1541
RsaI	GTAC	4 cut(s)	47, 588, 817, 900
RsaNI	GTAC	4 cut(s)	46, 587, 816, 899
RseI	CAYNNNNRTG	2 cut(s)	455, 759
SacI	GAGCTC	1 cut(s)	604
SapI	GCTCTTC	1 cut(s)	987
SaqAI	TTAA	2 cut(s)	720, 1461
Sau3AI	GATC	7 cut(s)	105, 580, 903, 963, 1207, 1255, 1273
Sau96I	GGNCC	3 cut(s)	31, 1115, 1568
SchI	GAGTC	2 cut(s)	854, 1420
ScrFI	CCNGG	4 cut(s)	578, 862, 1307, 1518
SduI	GDGCHC	6 cut(s)	219, 260, 418, 604, 796, 1352
SfaNI	GCATC	4 cut(s)	772, 1035, 1090, 1381
SfcI	CTRYAG	3 cut(s)	263, 1092, 1421
Sfr274I	CTCGAG	2 cut(s)	269, 1469
SgrAI	CRCCGGYG	1 cut(s)	193
SinI	GGWCC	3 cut(s)	31, 1115, 1568
SlaI	CTCGAG	2 cut(s)	269, 1469
SmiMI	CAYNNNNRTG	2 cut(s)	455, 759
SmlI	CTYRAG	2 cut(s)	269, 1469
SmoI	CTYRAG	2 cut(s)	269, 1469
SphI	GCATGC	1 cut(s)	638
SseBI	AGGCCT	1 cut(s)	1305
SspI	AATATT	1 cut(s)	931
SspMI	CTAG	2 cut(s)	212, 1603
SstI	GAGCTC	1 cut(s)	604
StuI	AGGCCT	1 cut(s)	1305
StyD4I	CCNGG	4 cut(s)	576, 860, 1305, 1516
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	5 cut(s)	225, 922, 1291, 1499, 1534
TaiI	ACGT	1 cut(s)	443
TaqI	TCGA	5 cut(s)	270, 402, 1098, 1382, 1470
TauI	GCSGC	5 cut(s)	39, 79, 82, 150, 166
TfiI	GAWTC	7 cut(s)	115, 563, 607, 751, 1084, 1417, 1590
Tru1I	TTAA	2 cut(s)	720, 1461
Tru9I	TTAA	2 cut(s)	720, 1461
TscAI	CASTG	1 cut(s)	601
TseI	GCWGC	5 cut(s)	166, 265, 312, 407, 1166
TspDTI	ATGAA	6 cut(s)	377, 389, 780, 789, 872, 1518
TspGWI	ACGGA	2 cut(s)	886, 1569
TspRI	CASTG	1 cut(s)	601
Tth111I	GACNNNGTC	1 cut(s)	673
Van91I	CCANNNNNTGG	1 cut(s)	1544
VpaK11BI	GGWCC	3 cut(s)	31, 1115, 1568
XapI	RAATTY	4 cut(s)	828, 1218, 1342, 1443
XceI	RCATGY	1 cut(s)	638
XhoI	CTCGAG	2 cut(s)	269, 1469
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	2 cut(s)	212, 1603
ZraI	GACGTC	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.