Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005982

Physical Location & Seq

Genomic Coordinates Reverse (-)

28890553 .. 28892333

Gene Structure 1781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1209900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGTGGAGATCAGGAAGAACCGTCGAGAAGAGAGCCTCCAGAAGAAGCGCCGCGAGGGGCTTCAACCTCAGCAGTTGTCCTCCAGTCTTCACTCCTCCGGTCTGGATAAGAAGGCTGTTTGGGCACTGGGAAATGTTGCTGGTGATTCCCCTAGATGCCGTGATCTTGTACTTGGTAATGGGGCTTTGCTTCCATTGCTTTCGCAGCTTAATGAGAATGCAAAGCTCTCTATGCTGAGAAACGCAACTTGGACACTGTCAAATTTTTGCAGGGGCAAACCACAGCCTCCATTTGATCAGGTTAAGCCTGCCCTTCCAGCTCTTGCTCGTTTGATTCATTCAAACGATGAAGAAGTTTTGACTGATGCTTGTTGGGCTCTTTCTTATCTTTCTGATGGTACAAATGACAAGATCCAAGCTGTTATTGAATCTGGAGTGTGCCCCCGGCTTGTTGAGCTTTTAATGCATCCATCCCCTTCTGTTCTCATTCCTGCTCTCCGCACAGTTGGAAATATTGTTACTGGAGATGATATGCAAACTCAGGTTGTTTGCTCTTTGGCTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0017038 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm Arm_3 IBB

Protein Analysis

189

Amino Acids

20.61

Weight (kDa)

8.32

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arm	PF00514	50 - 91	2.3e-07	Armadillo/beta-catenin-like repeat
Arm	PF00514	104 - 132	7.7e-09	Armadillo/beta-catenin-like repeat
Arm	PF00514	135 - 173	1.7e-10	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02150 AT4G02150
fragaria_vesca	FvH4_6g07130
malus_domestica	MD04G1196000.v1.1 MD07G1209900.v1.1 MD12G1208700.v1.1
prunus_persica	Prupe.6G315900_v2.0.a1 Prupe.6G315900_v2.0.a1 Prupe.6G315900_v2.0.a1
pyrus_communis	pycom04g17330 pycom12g19610
rosa_chinensis	RchiOBHm_Chr3g0456721 RchiOBHm_Chr7g0191281 RchiOBHm_Chr7g0191291
rosa_laevigata	RLG00000025281 RLG00000027861
rosa_multiflora	Rmu_co8463855.1_g000001 Rmu_sc0000133.1_g000026 Rmu_sc0037422.1_g000002
rosa_roxburghii	Rroxscaffold_11G00450370 Rroxscaffold_6G00422510
rosa_rugosa	Rorug03G0015300
rosa_samantha	Rh3AG075800 Rh3BG077700 Rh3CG077500 Rh3DG079400
rosa_wichuraiana	Rw3G006500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	54
AciI	CCGC	2 cut(s)	52, 499
AclWI	GGATC	1 cut(s)	406
AcsI	RAATTY	1 cut(s)	262
AfaI	GTAC	2 cut(s)	171, 400
AgsI	TTSAA	3 cut(s)	65, 342, 428
AjuI	GAANNNNNNNTTGG	2 cut(s)	232, 264
AluBI	AGCT	5 cut(s)	208, 226, 320, 419, 457
AluI	AGCT	5 cut(s)	208, 226, 320, 419, 457
AlwI	GGATC	1 cut(s)	406
ApeKI	GCWGC	1 cut(s)	205
ApoI	RAATTY	1 cut(s)	262
AspLEI	GCGC	1 cut(s)	51
AsuC2I	CCSGG	1 cut(s)	445
AsuHPI	GGTGA	1 cut(s)	155
BaeGI	GKGCMC	2 cut(s)	127, 443
BanII	GRGCYC	1 cut(s)	379
BbsI	GAAGAC	1 cut(s)	80
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	2 cut(s)	389, 478
BceAI	ACGGC	1 cut(s)	144
BclI	TGATCA	1 cut(s)	295
BcnI	CCSGG	1 cut(s)	445
BfaI	CTAG	1 cut(s)	153
BfoI	RGCGCY	1 cut(s)	52
BisI	GCNGC	2 cut(s)	52, 206
BlsI	GCNGC	2 cut(s)	53, 207
Bme1390I	CCNGG	1 cut(s)	445
BmrFI	CCNGG	1 cut(s)	445
BmrI	ACTGGG	1 cut(s)	137
BmsI	GCATC	3 cut(s)	146, 355, 475
BmuI	ACTGGG	1 cut(s)	137
BpiI	GAAGAC	1 cut(s)	80
BpmI	CTGGAG	4 cut(s)	23, 67, 453, 543
Bpu10I	CCTNAGC	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	445
BsaJI	CCNNGG	1 cut(s)	443
BsaWI	WCCGGW	1 cut(s)	98
Bse1I	ACTGG	3 cut(s)	84, 132, 526
Bse3DI	GCAATG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	443
BseGI	GGATG	2 cut(s)	466, 470
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	3 cut(s)	83, 227, 554
BseNI	ACTGG	3 cut(s)	84, 132, 526
BseRI	GAGGAG	1 cut(s)	85
BseSI	GKGCMC	2 cut(s)	127, 443
BseXI	GCAGC	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	54
BsiSI	CCGG	2 cut(s)	99, 445
BsmI	GAATGC	1 cut(s)	223
Bsp1286I	GDGCHC	3 cut(s)	127, 379, 443
Bsp143I	GATC	4 cut(s)	9, 163, 295, 411
BspACI	CCGC	2 cut(s)	52, 499
BspCNI	CTCAG	3 cut(s)	82, 228, 553
BspFNI	CGCG	1 cut(s)	54
BspPI	GGATC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	194
BsrI	ACTGG	3 cut(s)	84, 132, 526
BssECI	CCNNGG	1 cut(s)	443
BssMI	GATC	4 cut(s)	9, 163, 295, 411
Bst4CI	ACNGT	3 cut(s)	23, 258, 505
Bst6I	CTCTTC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	3 cut(s)	69, 236, 540
BstF5I	GGATG	2 cut(s)	466, 470
BstFNI	CGCG	1 cut(s)	54
BstH2I	RGCGCY	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	4 cut(s)	12, 166, 298, 414
BstMBI	GATC	4 cut(s)	9, 163, 295, 411
BstMWI	GCNNNNNNNGC	8 cut(s)	122, 196, 205, 232, 317, 374, 454, 463
BstSCI	CCNGG	1 cut(s)	443
BstSLI	GKGCMC	2 cut(s)	127, 443
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	217
BstV2I	GAAGAC	1 cut(s)	80
BstX2I	RGATCY	1 cut(s)	411
BstYI	RGATCY	1 cut(s)	411
BtsCI	GGATG	2 cut(s)	466, 470
BtsIMutI	CAGTG	2 cut(s)	125, 254
Cac8I	GCNNGC	1 cut(s)	309
CfoI	GCGC	1 cut(s)	51
Csp6I	GTAC	2 cut(s)	170, 399
CviQI	GTAC	2 cut(s)	170, 399
DdeI	CTNAG	3 cut(s)	69, 236, 540
DpnI	GATC	4 cut(s)	11, 165, 297, 413
DpnII	GATC	4 cut(s)	9, 163, 295, 411
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	379
EcoT22I	ATGCAT	1 cut(s)	468
EcoT38I	GRGCYC	1 cut(s)	379
FaiI	YATR	2 cut(s)	233, 533
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	2 cut(s)	52, 206
FokI	GGATG	2 cut(s)	453, 457
FriOI	GRGCYC	1 cut(s)	379
Fsp4HI	GCNGC	2 cut(s)	52, 206
FspBI	CTAG	1 cut(s)	153
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	2 cut(s)	52, 206
GsuI	CTGGAG	4 cut(s)	23, 67, 453, 543
HaeII	RGCGCY	1 cut(s)	52
HapII	CCGG	2 cut(s)	99, 445
HhaI	GCGC	1 cut(s)	51
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HinfI	GANTC	3 cut(s)	146, 334, 428
HpaII	CCGG	2 cut(s)	99, 445
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	394
Hpy188III	TCNNGA	5 cut(s)	13, 26, 40, 104, 432
Hpy99I	CGWCG	1 cut(s)	27
HpyAV	CCTTC	3 cut(s)	106, 323, 486
HpyCH4III	ACNGT	3 cut(s)	23, 258, 505
HpyCH4V	TGCA	4 cut(s)	221, 270, 466, 535
HpyF10VI	GCNNNNNNNGC	8 cut(s)	122, 196, 205, 232, 317, 374, 454, 463
HpyF3I	CTNAG	3 cut(s)	69, 236, 540
HspAI	GCGC	1 cut(s)	49
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	4 cut(s)	9, 163, 295, 411
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	3 cut(s)	146, 355, 475
MaeI	CTAG	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	4 cut(s)	11, 165, 297, 413
MboI	GATC	4 cut(s)	9, 163, 295, 411
MboII	GAAGA	5 cut(s)	28, 41, 55, 80, 362
MflI	RGATCY	1 cut(s)	411
MhlI	GDGCHC	3 cut(s)	127, 379, 443
MluCI	AATT	1 cut(s)	262
MmeI	TCCRAC	1 cut(s)	487
MnlI	CCTC	6 cut(s)	47, 49, 78, 91, 106, 297
Mph1103I	ATGCAT	1 cut(s)	468
MseI	TTAA	3 cut(s)	210, 303, 461
MspI	CCGG	2 cut(s)	99, 445
MspR9I	CCNGG	1 cut(s)	445
Mva1269I	GAATGC	1 cut(s)	223
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	8 cut(s)	122, 196, 205, 232, 317, 374, 454, 463
NciI	CCSGG	1 cut(s)	445
NdeII	GATC	4 cut(s)	9, 163, 295, 411
NsiI	ATGCAT	1 cut(s)	468
PctI	GAATGC	1 cut(s)	223
PfeI	GAWTC	3 cut(s)	146, 334, 428
PflFI	GACNNNGTC	1 cut(s)	256
PkrI	GCNGC	2 cut(s)	53, 207
PsuI	RGATCY	1 cut(s)	411
PsyI	GACNNNGTC	1 cut(s)	256
RsaI	GTAC	2 cut(s)	171, 400
RsaNI	GTAC	2 cut(s)	170, 399
SaqAI	TTAA	3 cut(s)	210, 303, 461
SatI	GCNGC	2 cut(s)	52, 206
Sau3AI	GATC	4 cut(s)	9, 163, 295, 411
ScrFI	CCNGG	1 cut(s)	445
SduI	GDGCHC	3 cut(s)	127, 379, 443
SetI	ASST	8 cut(s)	70, 210, 228, 303, 322, 421, 459, 546
SfaNI	GCATC	3 cut(s)	146, 355, 475
Sse9I	AATT	1 cut(s)	262
SsiI	CCGC	2 cut(s)	52, 499
SspI	AATATT	1 cut(s)	514
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	443
TaaI	ACNGT	3 cut(s)	23, 258, 505
TaqI	TCGA	1 cut(s)	25
TasI	AATT	1 cut(s)	262
TatI	WGTACW	1 cut(s)	169
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	3 cut(s)	146, 334, 428
Tru1I	TTAA	3 cut(s)	210, 303, 461
Tru9I	TTAA	3 cut(s)	210, 303, 461
TscAI	CASTG	2 cut(s)	132, 261
TseI	GCWGC	1 cut(s)	205
TspDTI	ATGAA	2 cut(s)	326, 363
TspRI	CASTG	2 cut(s)	132, 261
Tth111I	GACNNNGTC	1 cut(s)	256
XapI	RAATTY	1 cut(s)	262
XspI	CTAG	1 cut(s)	153
Zsp2I	ATGCAT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.