AT4G03040

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0018271
Physical Location & Seq
Forward (+)
1341083 .. 1343140
2058 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G03040.1

Sequence Viewer

Length: 279 bp
ATGAACCTCGAAGAACGAATAATGGTTAATATATTTGTGCCAAAGAATGAGACCATCAAGAGGCACTATAAGGAAGTATACGACACGACACTCTCTCCATTAAAGCAAGATAGCAAAGCGGGCATTTGCTTGATTTTGACTGACTCACACGGGAAATATATCCTCAAAGGCTGCTCCTCGATCGAGCCAACAAACTCAGCCCTAGAAGCAGAAGCAATAGCCCTCAAGGAGGCATTGCTCCAAGTGAAGTGCCTACAATACCAGGATGTTATTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.38

Weight (kDa)

6.08

Isoelectric Point (pI)

61.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 35 - 91 1.2e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66045 AT4G03040 AT5G33330
fragaria_vesca FvH4_1g08831 FvH4_1g28351 FvH4_6g21511
malus_domestica MD07G1073700.v1.1
prunus_persica Prupe.5G022500_v2.0.a1 Prupe.6G105300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0148031

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 78
AciI CCGC 1 cut(s) 119
AfiI CCNNNNNNNGG 2 cut(s) 60, 229
AjnI CCWGG 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 158
BccI CCATC 1 cut(s) 62
BciT130I CCWGG 1 cut(s) 263
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 1 cut(s) 203
BisI GCNGC 1 cut(s) 172
BlsI GCNGC 1 cut(s) 173
Bme1390I CCNGG 1 cut(s) 263
BmrFI CCNGG 1 cut(s) 263
BpuEI CTTGAG 1 cut(s) 209
BsaI GGTCTC 1 cut(s) 44
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 229
Bse3DI GCAATG 1 cut(s) 233
BseBI CCWGG 1 cut(s) 263
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 2 cut(s) 60, 229
BseMI GCAATG 1 cut(s) 233
BseMII CTCAG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 158
Bsh1285I CGRYCG 1 cut(s) 183
BsiEI CGRYCG 1 cut(s) 183
BslI CCNNNNNNNGG 2 cut(s) 60, 229
BsmAI GTCTC 1 cut(s) 44
Bso31I GGTCTC 1 cut(s) 44
Bsp143I GATC 1 cut(s) 180
BspACI CCGC 1 cut(s) 119
BspCNI CTCAG 1 cut(s) 209
BspTNI GGTCTC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 233
BssMI GATC 1 cut(s) 180
BssNAI GTATAC 1 cut(s) 79
Bst1107I GTATAC 1 cut(s) 79
Bst2UI CCWGG 1 cut(s) 263
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 1 cut(s) 196
BstENI CCTNNNNNAGG 1 cut(s) 227
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 1 cut(s) 183
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 1 cut(s) 180
BstMCI CGRYCG 1 cut(s) 183
BstMWI GCNNNNNNNGC 2 cut(s) 120, 206
BstNI CCWGG 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 158
BstZ17I GTATAC 1 cut(s) 79
BtsCI GGATG 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 121
CviJI RGCY 4 cut(s) 171, 187, 200, 221
CviKI_1 RGCY 4 cut(s) 171, 187, 200, 221
DdeI CTNAG 1 cut(s) 196
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
Eco31I GGTCTC 1 cut(s) 44
EcoNI CCTNNNNNAGG 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 261
FaiI YATR 4 cut(s) 32, 69, 79, 159
FauI CCCGC 1 cut(s) 112
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 172
Fsp4HI GCNGC 1 cut(s) 172
FspBI CTAG 1 cut(s) 203
GluI GCNGC 1 cut(s) 172
HinfI GANTC 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 79
Hpy188III TCNNGA 1 cut(s) 58
Hpy8I GTNNAC 1 cut(s) 79
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 206
HpyF3I CTNAG 1 cut(s) 196
Kzo9I GATC 1 cut(s) 180
LmnI GCTCC 2 cut(s) 179, 243
LpnPI CCDG 2 cut(s) 248, 275
Lsp1109I GCAGC 1 cut(s) 158
MaeI CTAG 1 cut(s) 203
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 1 cut(s) 23
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 6 cut(s) 17, 54, 173, 187, 223, 233
MseI TTAA 2 cut(s) 27, 101
MspR9I CCNGG 1 cut(s) 263
MvaI CCWGG 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 120, 206
NdeII GATC 1 cut(s) 180
PkrI GCNGC 1 cut(s) 173
Ple19I CGATCG 1 cut(s) 183
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
PvuI CGATCG 1 cut(s) 183
SaqAI TTAA 2 cut(s) 27, 101
SatI GCNGC 1 cut(s) 172
Sau3AI GATC 1 cut(s) 180
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 263
SetI ASST 1 cut(s) 9
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
SsiI CCGC 1 cut(s) 119
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 261
TaqI TCGA 3 cut(s) 9, 179, 183
Tru1I TTAA 2 cut(s) 27, 101
Tru9I TTAA 2 cut(s) 27, 101
TseI GCWGC 1 cut(s) 171
TspDTI ATGAA 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 78
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.