FvH4_6g21511

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018271
Physical Location & Seq
Reverse (-)
15105749 .. 15107204
1456 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21511.t1

Sequence Viewer

Length: 756 bp
ATGCACGAAAGCCAAATCCTTAGCTTGATCCCCTCCTCCATCATCAACCCTTACACAGTCTGGCACGACCCAAACACAATGCTCAACACCATCGAACCAAACACGATCAAAGTGGATACTCATGTAACCCATAGCGCCGCCATGATGTCGCAGCACTTTGAGTTTTCACCGATCACTCCTTCCCGCCTTCACGGTCAAGCACAACCTGTCACACCTCATTGGGAAGCCATCAGCCGTGACATCAAGATACTGGCTAGACAACTACAAAGTGTTGATTTCCAGCACATCTGGAGAGAACCTAACTTCTTAGCGGATGCGATTACTACTCACGGACACACTTCAACTGTTGCTAGTTGGCATAACAGTCTACCTCCTTCTGCTCTTCATGCTTTTGATTTTGATTTTCTTAACTTAGGTTGTTTTAGAGGTTCTTCCTTGCAATTTGTTTCTTCTCATCGAAAAAAGAAGAATAAGGATTATTCGAGTGGGAAAAGAGAGGCCTTAGGGTTTAGGAGGCAGTCGTTGTCGTACTTCGTTAAGGTCAATGGCGGCTTTGTGCGGCCGGAGACTTGTGATAGTTTGGGTGGTGTCCGCTTGTTTGGAGCAGCGGCGTTAAGTATAGACAGTGGTGATCGAGTTCTCTGGGGCTCGCAAGGTCGGCCGCCGGAATCAGTGGCGGCGGTAGTCTGGGTGTCTTGTTTGGGTCCTCAGAGCAATTTACCTTGGGCTCTTTTGGCCTGGGCTCCTTGGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

252

Amino Acids

27.96

Weight (kDa)

8.5

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66045 AT4G03040 AT5G33330
fragaria_vesca FvH4_1g08831 FvH4_1g28351 FvH4_6g21511
malus_domestica MD07G1073700.v1.1
prunus_persica Prupe.5G022500_v2.0.a1 Prupe.6G105300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0148031

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 367
AclWI GGATC 1 cut(s) 22
AcoI YGGCCR 2 cut(s) 560, 659
AfaI GTAC 1 cut(s) 530
AgsI TTSAA 1 cut(s) 342
AjnI CCWGG 1 cut(s) 737
AluBI AGCT 1 cut(s) 24
AluI AGCT 1 cut(s) 24
Alw26I GTCTC 1 cut(s) 560
AlwI GGATC 1 cut(s) 22
AoxI GGCC 4 cut(s) 498, 560, 659, 735
ApeKI GCWGC 2 cut(s) 151, 605
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 704
AsuHPI GGTGA 2 cut(s) 159, 641
AvaII GGWCC 1 cut(s) 704
AxyI CCTNAGG 1 cut(s) 502
BaeI ACNNNNGTAYC 2 cut(s) 108, 141
BanII GRGCYC 3 cut(s) 650, 730, 745
BbvI GCAGC 2 cut(s) 163, 617
BccI CCATC 3 cut(s) 47, 98, 236
BceAI ACGGC 1 cut(s) 219
BciT130I CCWGG 1 cut(s) 739
BciVI GTATCC 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 560
BfaI CTAG 3 cut(s) 255, 351, 754
BfoI RGCGCY 1 cut(s) 138
BfuI GTATCC 1 cut(s) 109
BisI GCNGC 8 cut(s) 138, 152, 550, 560, 606, 609, 662, 678
BlsI GCNGC 8 cut(s) 139, 153, 551, 561, 607, 610, 663, 679
Bme1390I CCNGG 1 cut(s) 739
Bme18I GGWCC 1 cut(s) 704
BmgT120I GGNCC 1 cut(s) 704
BmiI GGNNCC 2 cut(s) 705, 744
BmrFI CCNGG 1 cut(s) 739
BmsI GCATC 1 cut(s) 304
BpmI CTGGAG 1 cut(s) 310
Bpu10I CCTNAGC 1 cut(s) 20
BsaJI CCNNGG 3 cut(s) 722, 738, 746
Bse1I ACTGG 1 cut(s) 255
Bse21I CCTNAGG 1 cut(s) 502
BseBI CCWGG 1 cut(s) 739
BseDI CCNNGG 3 cut(s) 722, 738, 746
BseGI GGATG 1 cut(s) 319
BseMII CTCAG 1 cut(s) 722
BseNI ACTGG 1 cut(s) 255
BseRI GAGGAG 1 cut(s) 25
BseX3I CGGCCG 2 cut(s) 560, 659
BseXI GCAGC 2 cut(s) 163, 617
Bsh1285I CGRYCG 2 cut(s) 563, 662
BshFI GGCC 4 cut(s) 500, 562, 661, 737
BsiEI CGRYCG 2 cut(s) 563, 662
BsiSI CCGG 2 cut(s) 563, 665
BsmAI GTCTC 1 cut(s) 560
BsnI GGCC 4 cut(s) 500, 562, 661, 737
Bsp1286I GDGCHC 3 cut(s) 650, 730, 745
Bsp143I GATC 4 cut(s) 27, 105, 171, 631
BspANI GGCC 4 cut(s) 500, 562, 661, 737
BspCNI CTCAG 1 cut(s) 721
BspLI GGNNCC 2 cut(s) 705, 744
BspPI GGATC 1 cut(s) 22
BspQI GCTCTTC 1 cut(s) 387
BsrI ACTGG 1 cut(s) 255
BssECI CCNNGG 3 cut(s) 722, 738, 746
BssMI GATC 4 cut(s) 27, 105, 171, 631
BssT1I CCWWGG 2 cut(s) 722, 746
Bst2UI CCWGG 1 cut(s) 739
Bst4CI ACNGT 5 cut(s) 58, 194, 346, 365, 626
Bst6I CTCTTC 1 cut(s) 387
BstC8I GCNNGC 1 cut(s) 650
BstDEI CTNAG 5 cut(s) 20, 307, 412, 502, 708
BstF5I GGATG 1 cut(s) 319
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 4 cut(s) 30, 108, 174, 634
BstMAI GTCTC 1 cut(s) 560
BstMBI GATC 4 cut(s) 27, 105, 171, 631
BstMCI CGRYCG 2 cut(s) 563, 662
BstMWI GCNNNNNNNGC 3 cut(s) 386, 658, 734
BstNI CCWGG 1 cut(s) 739
BstSCI CCNGG 1 cut(s) 737
BstV1I GCAGC 2 cut(s) 163, 617
BstZI CGGCCG 2 cut(s) 560, 659
Bsu36I CCTNAGG 1 cut(s) 502
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 4 cut(s) 500, 562, 661, 737
BtsCI GGATG 1 cut(s) 319
BtsIMutI CAGTG 2 cut(s) 631, 678
Cac8I GCNNGC 1 cut(s) 650
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 704
Csp6I GTAC 1 cut(s) 529
CviAII CATG 3 cut(s) 122, 142, 386
CviQI GTAC 1 cut(s) 529
DdeI CTNAG 5 cut(s) 20, 307, 412, 502, 708
DpnI GATC 4 cut(s) 29, 107, 173, 633
DpnII GATC 4 cut(s) 27, 105, 171, 631
EaeI YGGCCR 2 cut(s) 560, 659
EagI CGGCCG 2 cut(s) 560, 659
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
EclXI CGGCCG 2 cut(s) 560, 659
Eco130I CCWWGG 2 cut(s) 722, 746
Eco147I AGGCCT 1 cut(s) 500
Eco24I GRGCYC 3 cut(s) 650, 730, 745
Eco47I GGWCC 1 cut(s) 704
Eco52I CGGCCG 2 cut(s) 560, 659
Eco81I CCTNAGG 1 cut(s) 502
EcoO109I RGGNCCY 1 cut(s) 704
EcoRII CCWGG 1 cut(s) 737
EcoT14I CCWWGG 2 cut(s) 722, 746
EcoT38I GRGCYC 3 cut(s) 650, 730, 745
ErhI CCWWGG 2 cut(s) 722, 746
FaeI CATG 3 cut(s) 125, 145, 389
FaiI YATR 6 cut(s) 123, 132, 143, 360, 387, 620
FatI CATG 3 cut(s) 121, 141, 385
FauI CCCGC 1 cut(s) 191
FblI GTMKAC 1 cut(s) 367
Fnu4HI GCNGC 8 cut(s) 138, 152, 550, 560, 606, 609, 662, 678
FokI GGATG 1 cut(s) 326
FriOI GRGCYC 3 cut(s) 650, 730, 745
Fsp4HI GCNGC 8 cut(s) 138, 152, 550, 560, 606, 609, 662, 678
FspBI CTAG 3 cut(s) 255, 351, 754
GlaI GCGC 1 cut(s) 136
GluI GCNGC 8 cut(s) 138, 152, 550, 560, 606, 609, 662, 678
GsuI CTGGAG 1 cut(s) 310
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 4 cut(s) 500, 562, 661, 737
HapII CCGG 2 cut(s) 563, 665
HhaI GCGC 1 cut(s) 137
Hin1II CATG 3 cut(s) 125, 145, 389
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HinfI GANTC 1 cut(s) 668
HpaII CCGG 2 cut(s) 563, 665
HphI GGTGA 2 cut(s) 159, 641
Hpy166II GTNNAC 1 cut(s) 368
Hpy188I TCNGA 1 cut(s) 711
Hpy188III TCNNGA 2 cut(s) 244, 289
Hpy8I GTNNAC 1 cut(s) 368
HpyAV CCTTC 3 cut(s) 189, 197, 384
HpyCH4III ACNGT 5 cut(s) 58, 194, 346, 365, 626
HpyCH4V TGCA 2 cut(s) 4, 439
HpyF10VI GCNNNNNNNGC 3 cut(s) 386, 658, 734
HpyF3I CTNAG 5 cut(s) 20, 307, 412, 502, 708
Hsp92II CATG 3 cut(s) 125, 145, 389
HspAI GCGC 1 cut(s) 135
Kzo9I GATC 4 cut(s) 27, 105, 171, 631
LguI GCTCTTC 1 cut(s) 387
LmnI GCTCC 2 cut(s) 602, 748
Lsp1109I GCAGC 2 cut(s) 163, 617
LweI GCATC 1 cut(s) 304
MaeI CTAG 3 cut(s) 255, 351, 754
MaeIII GTNAC 3 cut(s) 124, 208, 236
MalI GATC 4 cut(s) 29, 107, 173, 633
MboI GATC 4 cut(s) 27, 105, 171, 631
MboII GAAGA 4 cut(s) 374, 423, 441, 478
MhlI GDGCHC 3 cut(s) 650, 730, 745
MluCI AATT 2 cut(s) 440, 715
MnlI CCTC 8 cut(s) 43, 46, 225, 381, 419, 490, 507, 717
MseI TTAA 3 cut(s) 408, 537, 614
MspA1I CMGCKG 1 cut(s) 608
MspI CCGG 2 cut(s) 563, 665
MspR9I CCNGG 1 cut(s) 739
MvaI CCWGG 1 cut(s) 739
MwoI GCNNNNNNNGC 3 cut(s) 386, 658, 734
NdeII GATC 4 cut(s) 27, 105, 171, 631
NlaIII CATG 3 cut(s) 125, 145, 389
NlaIV GGNNCC 2 cut(s) 705, 744
NmuCI GTSAC 2 cut(s) 208, 236
PceI AGGCCT 1 cut(s) 500
PciSI GCTCTTC 1 cut(s) 387
PfeI GAWTC 1 cut(s) 668
PkrI GCNGC 8 cut(s) 139, 153, 551, 561, 607, 610, 663, 679
PpuMI RGGWCCY 1 cut(s) 704
Psp5II RGGWCCY 1 cut(s) 704
Psp6I CCWGG 1 cut(s) 737
PspGI CCWGG 1 cut(s) 737
PspN4I GGNNCC 2 cut(s) 705, 744
PspPI GGNCC 1 cut(s) 704
PspPPI RGGWCCY 1 cut(s) 704
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
SapI GCTCTTC 1 cut(s) 387
SaqAI TTAA 3 cut(s) 408, 537, 614
SatI GCNGC 8 cut(s) 138, 152, 550, 560, 606, 609, 662, 678
Sau3AI GATC 4 cut(s) 27, 105, 171, 631
Sau96I GGNCC 1 cut(s) 704
ScrFI CCNGG 1 cut(s) 739
SduI GDGCHC 3 cut(s) 650, 730, 745
SfaNI GCATC 1 cut(s) 304
SinI GGWCC 1 cut(s) 704
Sse9I AATT 2 cut(s) 440, 715
SseBI AGGCCT 1 cut(s) 500
SspMI CTAG 3 cut(s) 255, 351, 754
StuI AGGCCT 1 cut(s) 500
StyD4I CCNGG 1 cut(s) 737
StyI CCWWGG 2 cut(s) 722, 746
TaaI ACNGT 5 cut(s) 58, 194, 346, 365, 626
TaqI TCGA 4 cut(s) 93, 457, 482, 634
TasI AATT 2 cut(s) 440, 715
TauI GCSGC 6 cut(s) 140, 552, 562, 611, 664, 680
TfiI GAWTC 1 cut(s) 668
Tru1I TTAA 3 cut(s) 408, 537, 614
Tru9I TTAA 3 cut(s) 408, 537, 614
TscAI CASTG 2 cut(s) 631, 678
TseFI GTSAC 2 cut(s) 208, 236
TseI GCWGC 2 cut(s) 151, 605
Tsp45I GTSAC 2 cut(s) 208, 236
TspDTI ATGAA 1 cut(s) 374
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 2 cut(s) 631, 678
VpaK11BI GGWCC 1 cut(s) 704
XmiI GTMKAC 1 cut(s) 367
XspI CTAG 3 cut(s) 255, 351, 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.