FvH4_1g28351

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0018271
Physical Location & Seq
Forward (+)
20205304 .. 20206379
1076 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28351.t1

Sequence Viewer

Length: 495 bp
ATGGGCCGACCAAAGCCCTCCCGCCCAGCCCAAGCCCTAAAAACTGGGCTAAGTTTGGGCGTGCCCATCGGCCCTGGGCAAAGATTACAGGCCTACTGCTTCCACCCCACTTGGGTTAAGCTTGTTGTATCATGTGTAACTTCGGTCTCCTATTCTATCATTGTCAATGGCTCTCCTAAAATTTTTGTCAAGCCCTCAAGGGGTCTTAGACAGGGTGATCCATTAAGCCTCTTCCTATTCTTATTCATCAACGACATGCTTTCTTCTACGATAAGGAAAATCTATGAAAATCTCCTACATGCAGTTAGCATAAGCAATGATGGCCCTCGTAGGCGGAGGCAGTACAGCCCTTGTCTTCTGAGTCTTCTCTCATTCTCCGATTTCTCTCTTCCTCTCACTGTCAGTGTCTCACACCACTTGCCGCCTGACCCGCCTCCACTCCCTCCAGGCCTTCTAGTCCTCCACGACCACGGCTCCACCGTTTACCTCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

165

Amino Acids

17.99

Weight (kDa)

9.95

Isoelectric Point (pI)

40.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66045 AT4G03040 AT5G33330
fragaria_vesca FvH4_1g08831 FvH4_1g28351 FvH4_6g21511
malus_domestica MD07G1073700.v1.1
prunus_persica Prupe.5G022500_v2.0.a1 Prupe.6G105300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0148031

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 22, 334, 422, 431
AclWI GGATC 1 cut(s) 212
AcsI RAATTY 1 cut(s) 180
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 2 cut(s) 112, 200
AjnI CCWGG 2 cut(s) 73, 445
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Alw26I GTCTC 2 cut(s) 151, 412
AlwI GGATC 1 cut(s) 212
AoxI GGCC 5 cut(s) 4, 70, 90, 322, 448
ApoI RAATTY 1 cut(s) 180
AspS9I GGNCC 3 cut(s) 4, 71, 323
AsuHPI GGTGA 1 cut(s) 227
BaeGI GKGCMC 1 cut(s) 66
BbsI GAAGAC 2 cut(s) 347, 356
BccI CCATC 2 cut(s) 74, 314
BceAI ACGGC 1 cut(s) 487
BciT130I CCWGG 2 cut(s) 75, 447
BcoDI GTCTC 2 cut(s) 151, 412
BfaI CTAG 1 cut(s) 455
BisI GCNGC 1 cut(s) 422
BlsI GCNGC 1 cut(s) 423
Bme1390I CCNGG 2 cut(s) 75, 447
BmgT120I GGNCC 3 cut(s) 4, 71, 323
BmiI GGNNCC 1 cut(s) 475
BmrFI CCNGG 2 cut(s) 75, 447
BmrI ACTGGG 1 cut(s) 54
BmuI ACTGGG 1 cut(s) 54
BpiI GAAGAC 2 cut(s) 347, 356
BpmI CTGGAG 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 181
BsaI GGTCTC 1 cut(s) 151
BsaJI CCNNGG 3 cut(s) 73, 74, 469
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 200
Bse1I ACTGG 1 cut(s) 49
Bse3DI GCAATG 1 cut(s) 322
BseBI CCWGG 2 cut(s) 75, 447
BseDI CCNNGG 3 cut(s) 73, 74, 469
BseLI CCNNNNNNNGG 2 cut(s) 112, 200
BseMI GCAATG 1 cut(s) 322
BseMII CTCAG 1 cut(s) 350
BseNI ACTGG 1 cut(s) 49
BseSI GKGCMC 1 cut(s) 66
BseYI CCCAGC 1 cut(s) 25
BshFI GGCC 5 cut(s) 6, 72, 92, 324, 450
BslI CCNNNNNNNGG 2 cut(s) 112, 200
BsmAI GTCTC 2 cut(s) 151, 412
BsnI GGCC 5 cut(s) 6, 72, 92, 324, 450
Bso31I GGTCTC 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 4 cut(s) 22, 334, 422, 431
BspANI GGCC 5 cut(s) 6, 72, 92, 324, 450
BspCNI CTCAG 1 cut(s) 351
BspLI GGNNCC 1 cut(s) 475
BspPI GGATC 1 cut(s) 212
BspTNI GGTCTC 1 cut(s) 151
BsrDI GCAATG 1 cut(s) 322
BsrI ACTGG 1 cut(s) 49
BssECI CCNNGG 3 cut(s) 73, 74, 469
BssMI GATC 1 cut(s) 217
Bst2UI CCWGG 2 cut(s) 75, 447
Bst4CI ACNGT 2 cut(s) 400, 481
Bst6I CTCTTC 2 cut(s) 236, 393
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 4 cut(s) 50, 206, 359, 488
BstDSI CCRYGG 1 cut(s) 469
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 2 cut(s) 151, 412
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 2 cut(s) 321, 430
BstNI CCWGG 2 cut(s) 75, 447
BstNSI RCATGY 2 cut(s) 259, 302
BstSCI CCNGG 2 cut(s) 73, 445
BstSLI GKGCMC 1 cut(s) 66
BstV2I GAAGAC 2 cut(s) 347, 356
BsuRI GGCC 5 cut(s) 6, 72, 92, 324, 450
BtgI CCRYGG 1 cut(s) 469
BtsIMutI CAGTG 2 cut(s) 396, 409
Cac8I GCNNGC 1 cut(s) 62
Cfr13I GGNCC 3 cut(s) 4, 71, 323
Csp6I GTAC 1 cut(s) 343
CspCI CAANNNNNGTGG 2 cut(s) 92, 127
CviAII CATG 3 cut(s) 132, 256, 299
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 4 cut(s) 50, 206, 359, 488
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
Eam1104I CTCTTC 2 cut(s) 236, 393
EarI CTCTTC 2 cut(s) 236, 393
EciI GGCGGA 1 cut(s) 349
Eco147I AGGCCT 2 cut(s) 92, 450
Eco31I GGTCTC 1 cut(s) 151
EcoRII CCWGG 2 cut(s) 73, 445
FaeI CATG 3 cut(s) 135, 259, 302
FaiI YATR 5 cut(s) 133, 257, 285, 300, 311
FatI CATG 3 cut(s) 131, 255, 298
FauI CCCGC 2 cut(s) 29, 438
Fnu4HI GCNGC 1 cut(s) 422
Fsp4HI GCNGC 1 cut(s) 422
FspBI CTAG 1 cut(s) 455
GluI GCNGC 1 cut(s) 422
GsaI CCCAGC 1 cut(s) 29
GsuI CTGGAG 1 cut(s) 429
HaeIII GGCC 5 cut(s) 6, 72, 92, 324, 450
Hin1II CATG 3 cut(s) 135, 259, 302
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 1 cut(s) 361
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 1 cut(s) 484
Hpy188I TCNGA 2 cut(s) 360, 379
Hpy8I GTNNAC 1 cut(s) 484
HpyAV CCTTC 1 cut(s) 461
HpyCH4III ACNGT 2 cut(s) 400, 481
HpyCH4V TGCA 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 321, 430
HpyF3I CTNAG 4 cut(s) 50, 206, 359, 488
Hsp92II CATG 3 cut(s) 135, 259, 302
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 1 cut(s) 479
LpnPI CCDG 9 cut(s) 30, 39, 60, 74, 87, 197, 432, 438, 459
MaeI CTAG 1 cut(s) 455
MaeIII GTNAC 1 cut(s) 136
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 5 cut(s) 223, 255, 347, 356, 380
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 1 cut(s) 180
MlyI GAGTC 1 cut(s) 370
MnlI CCTC 9 cut(s) 28, 205, 239, 330, 336, 402, 444, 453, 470
MseI TTAA 3 cut(s) 117, 224, 493
MspR9I CCNGG 2 cut(s) 75, 447
MvaI CCWGG 2 cut(s) 75, 447
MwoI GCNNNNNNNGC 2 cut(s) 321, 430
NdeII GATC 1 cut(s) 217
NlaIII CATG 3 cut(s) 135, 259, 302
NlaIV GGNNCC 1 cut(s) 475
NspI RCATGY 2 cut(s) 259, 302
PasI CCCWGGG 1 cut(s) 74
PceI AGGCCT 2 cut(s) 92, 450
PcsI WCGNNNNNNNCGW 1 cut(s) 477
PkrI GCNGC 1 cut(s) 423
PleI GAGTC 1 cut(s) 369
PpsI GAGTC 1 cut(s) 369
Psp6I CCWGG 2 cut(s) 73, 445
PspFI CCCAGC 1 cut(s) 25
PspGI CCWGG 2 cut(s) 73, 445
PspN4I GGNNCC 1 cut(s) 475
PspPI GGNCC 3 cut(s) 4, 71, 323
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
SaqAI TTAA 3 cut(s) 117, 224, 493
SatI GCNGC 1 cut(s) 422
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 3 cut(s) 4, 71, 323
SchI GAGTC 1 cut(s) 370
ScrFI CCNGG 2 cut(s) 75, 447
SduI GDGCHC 1 cut(s) 66
SetI ASST 2 cut(s) 123, 489
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
Sse9I AATT 1 cut(s) 180
SseBI AGGCCT 2 cut(s) 92, 450
SsiI CCGC 4 cut(s) 22, 334, 422, 431
SspMI CTAG 1 cut(s) 455
StuI AGGCCT 2 cut(s) 92, 450
StyD4I CCNGG 2 cut(s) 73, 445
TaaI ACNGT 2 cut(s) 400, 481
TaqII GACCGA 1 cut(s) 133
TasI AATT 1 cut(s) 180
TatI WGTACW 1 cut(s) 342
TauI GCSGC 1 cut(s) 424
Tru1I TTAA 3 cut(s) 117, 224, 493
Tru9I TTAA 3 cut(s) 117, 224, 493
TscAI CASTG 2 cut(s) 403, 409
TspDTI ATGAA 2 cut(s) 235, 300
TspRI CASTG 2 cut(s) 403, 409
XapI RAATTY 1 cut(s) 180
XceI RCATGY 2 cut(s) 259, 302
XspI CTAG 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.