RchiOBHm_Chr2g0148031

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0018271
Physical Location & Seq
Forward (+)
65632789 .. 65633197
409 bp
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UTR
Exon/CDS
Intron
PRQ51761

Sequence Viewer

Length: 408 bp
ATGGTCACTCAGGAAATTTTGCATAAATGCAGACTTGCTAAAGGAGCTAAAGGGTTCATGGCTTGGAAAATTGACCTCTCTAAAGCTTATGATAAGCTAAATTGGCAGTTCATAGAGCAAGTTCTCTATGAAATCCAGCTTCCCCCCATGCTAATCAAACTAAACATGAGTTGCGTAACTACTGTGAGTTATCAGATTATTGTTAATGGGGAACTTTCCAACCATTTCTCTGCTGGGAGAGGCATAAGACAATGTGACCCCTTGTCTCCTTATTTATTTGTCTTATGCATGGAAAAATTGTCACATCAGATTAACTCGGCTGTTGACTTTGGACAATGGAAACCTATTGCTTCTTCCCAATCTGGTCCTTCTGTGTTCCACTTATTCTTTGCTGATGATTTAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

135

Amino Acids

15.34

Weight (kDa)

7.69

Isoelectric Point (pI)

30.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 12 - 135 8e-15 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66045 AT4G03040 AT5G33330
fragaria_vesca FvH4_1g08831 FvH4_1g28351 FvH4_6g21511
malus_domestica MD07G1073700.v1.1
prunus_persica Prupe.5G022500_v2.0.a1 Prupe.6G105300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0148031

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 15
AhdI GACNNNNNGTC 1 cut(s) 262
AluBI AGCT 4 cut(s) 47, 86, 97, 139
AluI AGCT 4 cut(s) 47, 86, 97, 139
Alw26I GTCTC 1 cut(s) 270
ApoI RAATTY 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 365
AvaII GGWCC 1 cut(s) 365
BcoDI GTCTC 1 cut(s) 270
Bme18I GGWCC 1 cut(s) 365
BmeRI GACNNNNNGTC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 365
BseMII CTCAG 1 cut(s) 23
BseYI CCCAGC 1 cut(s) 233
BsmAI GTCTC 1 cut(s) 270
BspCNI CTCAG 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 184
BstDEI CTNAG 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 270
BstMWI GCNNNNNNNGC 2 cut(s) 44, 103
Cfr13I GGNCC 1 cut(s) 365
CviAII CATG 4 cut(s) 58, 148, 166, 289
CviJI RGCY 6 cut(s) 47, 62, 86, 97, 139, 320
CviKI_1 RGCY 6 cut(s) 47, 62, 86, 97, 139, 320
DdeI CTNAG 1 cut(s) 9
DriI GACNNNNNGTC 1 cut(s) 262
Eam1105I GACNNNNNGTC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 365
EcoT22I ATGCAT 1 cut(s) 290
FaeI CATG 4 cut(s) 61, 151, 169, 292
FatI CATG 4 cut(s) 57, 147, 165, 288
GsaI CCCAGC 1 cut(s) 237
Hin1II CATG 4 cut(s) 61, 151, 169, 292
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 84
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 2 cut(s) 195, 309
Hpy188III TCNNGA 1 cut(s) 11
Hpy8I GTNNAC 1 cut(s) 325
HpyAV CCTTC 1 cut(s) 378
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4V TGCA 3 cut(s) 22, 30, 288
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 103
HpyF3I CTNAG 1 cut(s) 9
Hsp92II CATG 4 cut(s) 61, 151, 169, 292
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 3 cut(s) 149, 219, 348
MaeIII GTNAC 4 cut(s) 4, 175, 254, 300
MboII GAAGA 1 cut(s) 345
MluCI AATT 4 cut(s) 15, 69, 100, 296
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 2 cut(s) 86, 233
Mph1103I ATGCAT 1 cut(s) 290
MseI TTAA 3 cut(s) 204, 312, 401
MwoI GCNNNNNNNGC 2 cut(s) 44, 103
NlaIII CATG 4 cut(s) 61, 151, 169, 292
NmeAIII GCCGAG 1 cut(s) 296
NmuCI GTSAC 3 cut(s) 4, 254, 300
NsiI ATGCAT 1 cut(s) 290
PspFI CCCAGC 1 cut(s) 233
PspPI GGNCC 1 cut(s) 365
SaqAI TTAA 3 cut(s) 204, 312, 401
Sau96I GGNCC 1 cut(s) 365
SetI ASST 6 cut(s) 49, 78, 88, 99, 141, 346
SinI GGWCC 1 cut(s) 365
Sse9I AATT 4 cut(s) 15, 69, 100, 296
TaaI ACNGT 1 cut(s) 184
TasI AATT 4 cut(s) 15, 69, 100, 296
Tru1I TTAA 3 cut(s) 204, 312, 401
Tru9I TTAA 3 cut(s) 204, 312, 401
TseFI GTSAC 3 cut(s) 4, 254, 300
Tsp45I GTSAC 3 cut(s) 4, 254, 300
TspDTI ATGAA 3 cut(s) 46, 100, 144
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 1 cut(s) 15
XcmI CCANNNNNNNNNTGG 1 cut(s) 230
Zsp2I ATGCAT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.